Detailed information on TCONS_00066649

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-... novel protein coding TCONS_00066649 1049 440 UTR3 Trans

Sequence

>TCONS_00066649 (438 nt)
TTGAGATTAGGGATTGGTGATGACTCTTAACGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTG<br />AGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGGTAAGGTCATAGATCAACAGCATCCCAAGGCAGAAGAATTTTTCTTAGTACAGAACAAAA<br />TGGAGTCTCCTATGTCTACTTCTTTCTACACAGACACAGCAACAATCTGATTTCTCTATCTTTTCCCCACATTTCCCCCTTTTCTATTCGACGAAACCGC<br />CATCGTCATCATGGCCTGTTCTCAATGAGCTGTTGGGTACACCTCCCAGACGGGGTGGCGGCCGGGCAGAGGGGCTCCTCACTTCTCAGACGGGGTGGCT<br />GCCGGGTGGAGGGGCTCCTCACTTCTCAGACGGGGCGG

Expression



Full and truncated open reading frames discovered in TCONS_00066649

In silico ORF/peptide predictions
>peptide 1 (76 aa)
MTLNEHAAFKHLFNKAHLAPPLIHLTLSGHSTCFREHRVGGKVIDQQHPKAEEFFLVQNKMESPMSTSFYTDTATI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT120425 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P61583|NP5_HUMAN (Evalue: 2.0E-23)