Detailed information on TCONS_00069817

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00150045 ankyrin repeat domain 36C novel protein coding TCONS_00069817 678 277 UTR3 Trans
TCONS_00150051 ankyrin repeat domain 36C novel protein coding TCONS_00069817 678 277 UTR3 Trans

Sequence

>TCONS_00069817 (427 nt)
ATAGAAGAAATGGATAAATTCCTAGACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTG<br />TGGCAATAATCAATAGCTTACCAATGAAAAAGAGTCCAGGACCCAATGGATTCACACCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTT<br />CTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCA<br />AAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTAT<br />CCACCATGATCAAGTGGGCTTCATCCC

Expression



Full and truncated open reading frames discovered in TCONS_00069817

In silico ORF/peptide predictions
>peptide 1 (67 aa)
IEEMDKFLDTYTLPRLNQEEVESLNRPITGAEIVAIINSLPMKKSPGPNGFTPNSTRGTRRNWYHSF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT017523 (Evalue: 3.0E-178)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 4.0E-51)