Detailed information on TCONS_00073713

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00073713 546 230 UTR3 Trans
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00073713 567 230 UTR3 Trans

Sequence

>TCONS_00073713 (229 nt)
CCCATTTGTCAATTTTGGTTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATTGCCTAGGTTTTC<br />TTCTAGGGTTTTTATGGTTTTAGGTCTAACATTTAAGTCTTTAATCCATCTTGAATTAATTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTC<br />TACATATGGCTAGCCAGTTTGCCCAGCAC

Expression



Full and truncated open reading frames discovered in TCONS_00073713

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT016690 (Evalue: 6.0E-104)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 5.0E-34)