Detailed information on TCONS_00075670

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding TCONS_00075670 1872 833 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding TCONS_00075670 1872 833 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00075670 558 292 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00075670 1921 835 CDS_UTR Trans

Sequence

>TCONS_00193640 (834 nt)
TCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAAT
GATGATTTCCAATTTCATCCATGTCCCTACAAGGGACATGAACTCATCATTTTTTATGGCTGCATAGAATTCCATGGCGTATATGTACCACATTTTCTTA
ATCCAGTCTATCCTTGCTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCACGTGTCTTTATAGCAGC
ATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATTGCCACACTGACTTCCA
CAATGGTTGAACTAGTTTACAGTCCCACCAACAATGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATT
GCCATTCTAACTGGTGTGAGATGGTATCTCAATGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAACATTTTTTCATGTGTTTTTTGGCTG
CATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTA
GATTCTGGATATTAGCCCTTTGTCAGATGAGTGGGTTGCGAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTG
CAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTC

Expression



Full and truncated open reading frames discovered in TCONS_00193640

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.