Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000263955 | serine/threonine kinase 17b | protein coding | TCONS_00079848 | 577 | 291 | UTR3 | Trans | |
ENST00000276431 | tumor necrosis factor receptor superfamily, member 10b | protein coding | TCONS_00079848 | 500 | 276 | UTR3 | Trans | |
ENST00000324537 | SH3-domain GRB2-like 3 | protein coding | TCONS_00079848 | 599 | 299 | UTR5 | Trans | |
ENST00000338758 | parvin, beta | protein coding | TCONS_00079848 | 685 | 291 | UTR3 | Trans | |
ENST00000357164 | GM2 ganglioside activator | protein coding | TCONS_00079848 | 562 | 293 | UTR3 | Trans | |
ENST00000357491 | zinc finger protein 43 | protein coding | TCONS_00079848 | 626 | 290 | UTR3 | Trans | |
ENST00000381431 | sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) | protein coding | TCONS_00079848 | 605 | 294 | UTR3 | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | TCONS_00079848 | 549 | 291 | CDS | Trans | |
ENST00000549365 | DNA-damage regulated autophagy modulator 1 | nonsense mediated decay | TCONS_00079848 | 523 | 289 | CDS_UTR | Trans | |
ENST00000550527 | apoptotic peptidase activating factor 1 | protein coding | TCONS_00079848 | 609 | 292 | UTR3 | Trans | |
ENST00000588483 | tropomyosin 4 | protein coding | TCONS_00079848 | 612 | 291 | UTR5 | Trans | |
ENST00000594012 | zinc finger protein 43 | protein coding | TCONS_00079848 | 626 | 290 | UTR3 | Trans | |
TCONS_00034643 | CD82 molecule | novel protein coding | TCONS_00079848 | 623 | 293 | UTR3 | Trans | |
TCONS_00050195 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | TCONS_00079848 | 654 | 292 | UTR5 | Trans | |
TCONS_00053421 | apoptotic peptidase activating factor 1 | novel protein coding | TCONS_00079848 | 609 | 292 | UTR3 | Trans | |
TCONS_00053851 | transmembrane protein 263 | novel protein coding | TCONS_00079848 | 605 | 283 | UTR3 | Trans | |
TCONS_00107864 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00079848 | 657 | 293 | UTR3 | Trans | |
TCONS_00107867 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00079848 | 657 | 293 | UTR3 | Trans | |
TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | TCONS_00079848 | 544 | 280 | UTR3 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | TCONS_00079848 | 644 | 291 | UTR3 | Trans | |
TCONS_00132233 | zinc finger protein 43 | novel protein coding | TCONS_00079848 | 626 | 290 | UTR3 | Trans | |
TCONS_00153158 | serine/threonine kinase 17b | novel protein coding | TCONS_00079848 | 577 | 291 | UTR3 | Trans | |
TCONS_00160558 | cerebellin 4 precursor | novel protein coding | TCONS_00079848 | 539 | 292 | UTR3 | Trans | |
TCONS_00161482 | BTB and CNC homology 1, basic leucine zipper transcription factor 1 | novel protein coding | TCONS_00079848 | 645 | 293 | UTR3 | Trans | |
TCONS_00168219 | THO complex 5 | novel protein coding | TCONS_00079848 | 505 | 271 | UTR3 | Trans | |
TCONS_00168220 | THO complex 5 | novel protein coding | TCONS_00079848 | 505 | 271 | UTR3 | Trans | |
TCONS_00173724 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | TCONS_00079848 | 604 | 293 | UTR5 | Trans | |
TCONS_00173729 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | TCONS_00079848 | 604 | 293 | UTR5 | Trans | |
TCONS_00173891 | RNA, U6 small nuclear 461, pseudogene | novel protein coding | TCONS_00079848 | 598 | 285 | UTR3 | Trans | |
TCONS_00187460 | spermatogenesis associated 18 | novel protein coding | TCONS_00079848 | 612 | 291 | UTR3 | Trans | |
TCONS_00194682 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00079848 | 645 | 293 | UTR3 | Trans | |
TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00079848 | 645 | 293 | UTR3 | Trans | |
TCONS_00200901 | GM2 ganglioside activator | novel protein coding | TCONS_00079848 | 562 | 293 | UTR3 | Trans | |
TCONS_00200902 | GM2 ganglioside activator | novel protein coding | TCONS_00079848 | 562 | 293 | UTR3 | Trans | |
TCONS_00213191 | tubby like protein 4 | novel protein coding | TCONS_00079848 | 615 | 290 | UTR5 | Trans | |
TCONS_00222403 | protein tyrosine phosphatase, non-receptor type 12 | novel protein coding | TCONS_00079848 | 605 | 293 | UTR5 | Trans | |
TCONS_00233179 | BCL2/adenovirus E1B 19kDa interacting protein 3-like | novel protein coding | TCONS_00079848 | 632 | 295 | UTR3 | Trans | |
TCONS_00238831 | cytochrome P450, family 7, subfamily B, polypeptide 1 | novel protein coding | TCONS_00079848 | 515 | 293 | UTR3 | Trans |
>TCONS_00238831 (3070 nt)
CGCGGCGACCCGCAGGGCCAGGTGCAGGGCCCGCGAGTCCGGGGTCGCCGCAGCCCGGGAGGAGTGTCTGGTCTCCGGCCTGCCTGTGCTGTCCCCGCGC
CCTGTCCACTGGACTCCCGAGACCCTTGGAACCCAGGACACCATTGGAGAAACTGGGCATTTTACCAAGGATTTGACTGGAATGGCATGCTTCCTTTAAA
GATGAAAGTTGACTTTTAGAGCCAATTAAAGCCCTTTGGGGAATCTGGCCTCATACCTTGTCCACACAGAGTTCCTGTACAAGGTTCCTGACCTGTGGTG
TTCCATGAGCAAGGCATCCTGTTCGGCTACCGCCATCCACAGAGTTCTGCCACTGCCTGCATCCTCAGCCTTTTCCAAATGACCAATGAGACTCTCAACA
TTTGGACTCACTTGCTGCCCTTCTGGTACCTTCTGGCCCCCTCGACCGGCCTGTCTCCTTCAGGAGCCCTGGAGACCAGGGTGTCTTAAAACATGGCTAG
TGTTGAGAGGGCTGAGATTCTGTGCTGGGGTTTGGGGATCCCCCGTGGGTACACGCGGGTGAAGGGAGTGTGTGACAGAGGGAAGAGACATTGGGTGTGC
CACTGGGATGACCTTTAAGGCATGGACTGGGGTAAGATTTGAGGGGAAATCCCAAAAGTGCCTCAGTCCTTCCTGCTCCCTGCTCCGGTGCCTGATATGA
TAGCATTTACCTTCATCTCCGGTCTTGGAGACTTTCCAGGTCTTCCAGGAGCCCTGGTTAAAATGTCACTAGTTTGAGCAAGTCAACCTCTCTGAGCCTC
TCATTTTCCTACCTGCAAAGCAGGAGTGATGGTCCGCACCTCCCCAAGGGTTGCTGTGAGGGTTTGGGGAGAAAACATTGGTAGAGGCATCTGCCACAGA
GTTGTGGGTGTTCCGTAATCATTCTGGGAACCACGACAACTGGGAGGCACTTGGTCAGGCAGCCTGTAGATGGAGCCAGCTAAGAGCAAAGCTCTGGGAA
GCCTGTATGCAGAAATGGAAGTGGCCAGGGAAGCGAAGAGGGGCCTTGCTGAGAAAGGTGGGGGATGAAGGCCAATGTCACACACTGCACACCTTTGCTT
AAGGAATGGAGGATGGAGACAGGGTCAAAGCACCAAATCACAGTGGATCTGAGCTGGAAGAACTCAGAGGCCATTCAAGCCACTGTCCCACTCAGACCAC
CACTGGTCGATGTAGACACAGCCGAGAGACGGGGTGGCGTCCTTACGTCATGCAGGGGCGCCGTGGCACAGGCTGGTCACTGGACTCCCTCCAGTCATGT
TGAGAAGAGATGAGGAGTGTGCCATGAGTGGAGATGGGCCCAGGCTCCCCGCACAGGGGCAGCCAGCCTGAGTAGAAGTCAGATGACAGACCCGGGGCCA
AAATGCAGGGGCAGGCTGTTTGGTTCCAGCAGCCAGCTCAGTGGAGAGGGGAGAGAGCTCAGTCTGGTGTGGACTAGGGTGATCTGTAAAGGAGTGTGGC
AGCCCTGGGCCTGCGGACTGGGCAGGGGTGGCAGCACAGCCCTGCTCCAGGGGCCATTTGTCATTTTTAAAAGTATACATGCTTACAAATTATAACCCTT
CAGAAGGGAATAGAGTCAGGCTCTGCCACTGGCCCCAGTTCTCCTCCCTGGAGTGGCCAGGGGGACCTGCTTCCTATGCGTCCTCCTGGAGCTTTTCTGG
GGGACCCAGGAGCATCTGTGCTGTGAGCATCCACAGCATCTGCCTCTTTCCCTGCTGCCTTCCTCTTACTTCCCTCCCTTGGAGATCTCACTCTGTCAGC
ATCTGCAATCTGCATGTCTCCTGGACTTTGGAACATCTGCTTGGTGTTCCATTTTCTGGATGAATCATGGTTGATTTAGGCTGTTTTGAGATTTGAGCTG
CTAAAAGGGTACCAGCCTGTCCATCCCTGCTTGTGGGTCTTGCACTCCATGCATGGATCCCTGTAGGGTGATTTTTTGCTATGTTACAGCTGAGCCAAGC
TGGGTGAGCCGCACCCCCATCACCTCCAGCACTGCCTATGCACTTCTACACGGTGCCAGGCTCTCAGAGATGATCCTGACTGAGCAACAGAGAGTAGCAG
GAAGGACTTGGGGAGGTCTGGATCAAGATGCCCTAAGGAAATGGGACCACTGAAAAATTGAAATAACTGAAGGATACATTTTGAGAAACAGCAAATAGCT
TAAGCTTTACTTCCCGCTGGGACAAAATTAAAAAGTCCACAAGTGTAGCTGGAAGGATTTAGCAATGTTCCTTCAGCTCCTGCATATGAAAAGCTTTGTA
GAGTCTCCTCCCTTGGAGGAGTTAGTGAGAAAGGGAGCCAGCTCTCTAGGAGTGATTTGTGGAAGCGAGGTGCTCTGCAGGCGGGACCTCATGCGTGGAT
TGTAGGCCAGGCAGACCTGGTGAAGAATTTTGAAGTGTCTCTGCATAGAGATCTAGGCTCTGCTAAGAGTCAGCTGTGGGACTAGCTATTCCGAAAAGTG
ATTGTACTCTTAGTGGAGGAACAGTGTGGAGGAGGAGGGAGAAAATAGTTCTCTTGGCCTCGGCTTGCAAGGCTCCACCTGGGGCATTGCTTCTATTTGA
GGAGCCTTCCTACAAGAGGGACATAGACAAACTACATGGAGGAAGGACAAACCACGGGGATGGTGGTAACGCCACATTTAGATCCTGCGAGGAATGGCTG
AAGGAACCGGGAGTATTTAATGTGAAGTTCAAGGAGGTGGGAGGGGGTTAGAAAGACTGCCTTGAAATATTTGACAGGCGGCCGGGCGCAGTGGCTTATG
CCTATAATCCCAGTACTCTGGGAGGCTGAGGCAGGCAGACCACAAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACGCTGTCTCTACTAAA
AATACAAAAGTTAGCCAGGCGTGGTGGAGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGC
AGAGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.