Detailed information on TCONS_00079848

lncRNA-RNA interactions

Number of interactions: 38

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00079848 577 291 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding TCONS_00079848 500 276 UTR3 Trans
ENST00000324537 SH3-domain GRB2-like 3 protein coding TCONS_00079848 599 299 UTR5 Trans
ENST00000338758 parvin, beta protein coding TCONS_00079848 685 291 UTR3 Trans
ENST00000357164 GM2 ganglioside activator protein coding TCONS_00079848 562 293 UTR3 Trans
ENST00000357491 zinc finger protein 43 protein coding TCONS_00079848 626 290 UTR3 Trans
ENST00000381431 sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) protein coding TCONS_00079848 605 294 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00079848 549 291 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00079848 523 289 CDS_UTR Trans
ENST00000550527 apoptotic peptidase activating factor 1 protein coding TCONS_00079848 609 292 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding TCONS_00079848 612 291 UTR5 Trans
ENST00000594012 zinc finger protein 43 protein coding TCONS_00079848 626 290 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding TCONS_00079848 623 293 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding TCONS_00079848 654 292 UTR5 Trans
TCONS_00053421 apoptotic peptidase activating factor 1 novel protein coding TCONS_00079848 609 292 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding TCONS_00079848 605 283 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00079848 657 293 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00079848 657 293 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding TCONS_00079848 544 280 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00079848 644 291 UTR3 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding TCONS_00079848 626 290 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00079848 577 291 UTR3 Trans
TCONS_00160558 cerebellin 4 precursor novel protein coding TCONS_00079848 539 292 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00079848 645 293 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00079848 505 271 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00079848 505 271 UTR3 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00079848 604 293 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00079848 604 293 UTR5 Trans
TCONS_00173891 RNA, U6 small nuclear 461, pseudogene novel protein coding TCONS_00079848 598 285 UTR3 Trans
TCONS_00187460 spermatogenesis associated 18 novel protein coding TCONS_00079848 612 291 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00079848 645 293 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00079848 645 293 UTR3 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding TCONS_00079848 562 293 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding TCONS_00079848 562 293 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00079848 615 290 UTR5 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding TCONS_00079848 605 293 UTR5 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding TCONS_00079848 632 295 UTR3 Trans
TCONS_00238831 cytochrome P450, family 7, subfamily B, polypeptide 1 novel protein coding TCONS_00079848 515 293 UTR3 Trans

Sequence

>TCONS_00238831 (3070 nt)
CGCGGCGACCCGCAGGGCCAGGTGCAGGGCCCGCGAGTCCGGGGTCGCCGCAGCCCGGGAGGAGTGTCTGGTCTCCGGCCTGCCTGTGCTGTCCCCGCGC
CCTGTCCACTGGACTCCCGAGACCCTTGGAACCCAGGACACCATTGGAGAAACTGGGCATTTTACCAAGGATTTGACTGGAATGGCATGCTTCCTTTAAA
GATGAAAGTTGACTTTTAGAGCCAATTAAAGCCCTTTGGGGAATCTGGCCTCATACCTTGTCCACACAGAGTTCCTGTACAAGGTTCCTGACCTGTGGTG
TTCCATGAGCAAGGCATCCTGTTCGGCTACCGCCATCCACAGAGTTCTGCCACTGCCTGCATCCTCAGCCTTTTCCAAATGACCAATGAGACTCTCAACA
TTTGGACTCACTTGCTGCCCTTCTGGTACCTTCTGGCCCCCTCGACCGGCCTGTCTCCTTCAGGAGCCCTGGAGACCAGGGTGTCTTAAAACATGGCTAG
TGTTGAGAGGGCTGAGATTCTGTGCTGGGGTTTGGGGATCCCCCGTGGGTACACGCGGGTGAAGGGAGTGTGTGACAGAGGGAAGAGACATTGGGTGTGC
CACTGGGATGACCTTTAAGGCATGGACTGGGGTAAGATTTGAGGGGAAATCCCAAAAGTGCCTCAGTCCTTCCTGCTCCCTGCTCCGGTGCCTGATATGA
TAGCATTTACCTTCATCTCCGGTCTTGGAGACTTTCCAGGTCTTCCAGGAGCCCTGGTTAAAATGTCACTAGTTTGAGCAAGTCAACCTCTCTGAGCCTC
TCATTTTCCTACCTGCAAAGCAGGAGTGATGGTCCGCACCTCCCCAAGGGTTGCTGTGAGGGTTTGGGGAGAAAACATTGGTAGAGGCATCTGCCACAGA
GTTGTGGGTGTTCCGTAATCATTCTGGGAACCACGACAACTGGGAGGCACTTGGTCAGGCAGCCTGTAGATGGAGCCAGCTAAGAGCAAAGCTCTGGGAA
GCCTGTATGCAGAAATGGAAGTGGCCAGGGAAGCGAAGAGGGGCCTTGCTGAGAAAGGTGGGGGATGAAGGCCAATGTCACACACTGCACACCTTTGCTT
AAGGAATGGAGGATGGAGACAGGGTCAAAGCACCAAATCACAGTGGATCTGAGCTGGAAGAACTCAGAGGCCATTCAAGCCACTGTCCCACTCAGACCAC
CACTGGTCGATGTAGACACAGCCGAGAGACGGGGTGGCGTCCTTACGTCATGCAGGGGCGCCGTGGCACAGGCTGGTCACTGGACTCCCTCCAGTCATGT
TGAGAAGAGATGAGGAGTGTGCCATGAGTGGAGATGGGCCCAGGCTCCCCGCACAGGGGCAGCCAGCCTGAGTAGAAGTCAGATGACAGACCCGGGGCCA
AAATGCAGGGGCAGGCTGTTTGGTTCCAGCAGCCAGCTCAGTGGAGAGGGGAGAGAGCTCAGTCTGGTGTGGACTAGGGTGATCTGTAAAGGAGTGTGGC
AGCCCTGGGCCTGCGGACTGGGCAGGGGTGGCAGCACAGCCCTGCTCCAGGGGCCATTTGTCATTTTTAAAAGTATACATGCTTACAAATTATAACCCTT
CAGAAGGGAATAGAGTCAGGCTCTGCCACTGGCCCCAGTTCTCCTCCCTGGAGTGGCCAGGGGGACCTGCTTCCTATGCGTCCTCCTGGAGCTTTTCTGG
GGGACCCAGGAGCATCTGTGCTGTGAGCATCCACAGCATCTGCCTCTTTCCCTGCTGCCTTCCTCTTACTTCCCTCCCTTGGAGATCTCACTCTGTCAGC
ATCTGCAATCTGCATGTCTCCTGGACTTTGGAACATCTGCTTGGTGTTCCATTTTCTGGATGAATCATGGTTGATTTAGGCTGTTTTGAGATTTGAGCTG
CTAAAAGGGTACCAGCCTGTCCATCCCTGCTTGTGGGTCTTGCACTCCATGCATGGATCCCTGTAGGGTGATTTTTTGCTATGTTACAGCTGAGCCAAGC
TGGGTGAGCCGCACCCCCATCACCTCCAGCACTGCCTATGCACTTCTACACGGTGCCAGGCTCTCAGAGATGATCCTGACTGAGCAACAGAGAGTAGCAG
GAAGGACTTGGGGAGGTCTGGATCAAGATGCCCTAAGGAAATGGGACCACTGAAAAATTGAAATAACTGAAGGATACATTTTGAGAAACAGCAAATAGCT
TAAGCTTTACTTCCCGCTGGGACAAAATTAAAAAGTCCACAAGTGTAGCTGGAAGGATTTAGCAATGTTCCTTCAGCTCCTGCATATGAAAAGCTTTGTA
GAGTCTCCTCCCTTGGAGGAGTTAGTGAGAAAGGGAGCCAGCTCTCTAGGAGTGATTTGTGGAAGCGAGGTGCTCTGCAGGCGGGACCTCATGCGTGGAT
TGTAGGCCAGGCAGACCTGGTGAAGAATTTTGAAGTGTCTCTGCATAGAGATCTAGGCTCTGCTAAGAGTCAGCTGTGGGACTAGCTATTCCGAAAAGTG
ATTGTACTCTTAGTGGAGGAACAGTGTGGAGGAGGAGGGAGAAAATAGTTCTCTTGGCCTCGGCTTGCAAGGCTCCACCTGGGGCATTGCTTCTATTTGA
GGAGCCTTCCTACAAGAGGGACATAGACAAACTACATGGAGGAAGGACAAACCACGGGGATGGTGGTAACGCCACATTTAGATCCTGCGAGGAATGGCTG
AAGGAACCGGGAGTATTTAATGTGAAGTTCAAGGAGGTGGGAGGGGGTTAGAAAGACTGCCTTGAAATATTTGACAGGCGGCCGGGCGCAGTGGCTTATG
CCTATAATCCCAGTACTCTGGGAGGCTGAGGCAGGCAGACCACAAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACGCTGTCTCTACTAAA
AATACAAAAGTTAGCCAGGCGTGGTGGAGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGC
AGAGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00238831

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.