Detailed information on TCONS_00084682

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000409359 Rho guanine nucleotide exchange factor (... protein coding TCONS_00084682 568 282 UTR3 Trans
ENST00000620340 ribosomal protein S6 kinase, 90kDa, poly... protein coding TCONS_00084682 553 317 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00084682 539 275 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobio... novel protein coding TCONS_00084682 549 300 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding TCONS_00084682 636 295 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 4... novel protein coding TCONS_00084682 627 302 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00084682 602 309 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding TCONS_00084682 610 300 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding TCONS_00084682 502 315 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding TCONS_00084682 502 315 UTR3 Trans

Sequence

>TCONS_00084682 (7623 nt)
TTTCCGGGAGTCGGCGGCGATGGCGTCATCACCGAGTGCCGGGCCGACAGCAGCCCGGAGGTTGGCTATGTGACCAGGCAACATGCTGAGCCGGCTTCAG<br />GAACTGCGCAAGGAGGAGGAGACGCTGCTGCGGTTGAAGGCAGCCCTGCACGACCAGCTGAACCGCCTCAAGGTTGAAGAATTAGCCCTCCAATCAATGA<br />TCAGTTCTAGAAGAGGGGATGAGATGCTGTCTTCTCACACTGTACCTGAACAGTCACATGATATGTTGGTGCATGTAGACAATGAAGCATCAATCAACCA<br />AACAACCCTGGAGCTGAGCACAAAGAGTCATGTGACGGAAGAGGAGGAGGAGGAAGAGGAAGAAGAATCAGATTCCTAAAGGAGGGGGAAAGCCAGGCTG<br />GTCAGTTATACAAATTGCATTTCTAAGGCTCAGGCTACTTCTCCTCAAGGAAATCATCTTGCCCTGGGCCCTGTGATCTGCTTGAAAGGAAAGCAAGAAC<br />TATAAGGAGGATGTGTAGTTGCAAAAATGGCTCCATCGGTAACTCAAGCTTCAGAATGTTATGACATACAGAAAATCAAAGATGCTGTGTCTTAGCATTG<br />AGTAATATGGGTGGTGCTGTCTGTAATCTGGTCAGATTCAGTTAACTGTTCAGAACAAAATTTCCTCTGAAATACTGTTGAGAAAGTCTGTCATTTGCAA<br />AAAGAGCAGAGTTTAAATACAAGCCAGTCTTTCCAGTCAACAATGCCTCTTTGAAGAAAACCAATTAAAGACTGTTTGCATGCCGCTGAACCCTTGTGAG<br />CAGTTAGGACACAGTCTAGGACAGAAAGATGACAAGGGGAAGGACTGAGGGCCGTCTGAGAGCACAAGCTGTTTCTACCTCTCAGAGGCATTGAAATATT<br />GCATGCTATAAACTGCTTTGTGTATCTGTTACCACCTCTCACTTGAGACATCACTCACTGGTAAAATGTTTTATAAATAAATTTATAAGTAGCCATCATG<br />GAGCCTGCTGGTTTCTAGATAGCGACAGAGAGAAGCAGCAGTTCCTTCTCTGAGGAAAAGATACAACAGGATGGTTTGAAATCCATTTCTGGTCCTTAAG<br />AGAGATGTGCCATGCTTGGAAGACTGGATTTTTTGTTTTGTTTTTTGTTTTGTTTTGTTTGAGACGGAGTTTCACTCTTATTGCCCAGGCTGGAGTGCAA<br />TGGCGCGATTTTGGCTCACTGCAACCTCCCCTTCTCGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCAGAGTAGCTAGGATTACAGGCATGCACCACCAC<br />ACCCGGCTAATTTTGTATTTTTAGTAAAGATGGGATTTTTCCATGTTGGTCAGGCTGCTCTCGAACTCCCAACCTCAGGTTTTCCTCCCGCCTCGACCTC<br />CCAAAGTGCTGGGATTACACACGTGAGCCACTACACCAGGCCGGAAGACTGGATTTTTGTTAACAGATGACAGTTACAGAATAAGAGTTTTTACTTAGTA<br />TCTGAAGTTGAGGTTCATTTCTGCATACTGTCCCTTTTCCACTGACTACCATGAAATAAGTAGTTGCTTAATTTTATAAAATTAATTTCCCCTGCCCAAG<br />CAACAGTAAAAGCCAAACAAAACACAAAGAATCATGTCAAGCAGAACTTATGTAACAGTTCCCAAAGAAAACAAAGAATACTTTTTTTGTTAATCCACAT<br />TTCATTGAAGTTATTTTGAGCTGCTTTTAGAGGAAACAGCCAGAAGTTTAAATGAGCATGTTCCTTAGAACACACAATGGGAAGACAGTTTGGGAACAAA<br />AAGCATCAAGGTACATAAATTTTGGGGGTCTAATTTAAAATATGAGCATGAGTTTTAAAAGCTGGAAAACTTGACTATGAATTCCAGCTCTACCACAAAC<br />TGGTCACTTGTCTTCTCACCTCTTTGCAACTCACGTTCCCATCTGTAAGGTGAAGATACTCACATCTGCTCTAGCAGTTTCACAGGTTGCTATGAGGTGC<br />TAATGAGATCATTTAAAAATCCAACTATCATTGGTATCTCAGTAAGAATCTGGCATTGGGAGCTCAAAACACTGCAAGATTCATGCGGGGATCATAATTC<br />TTGGCTAAAAATTAAAAAAAAAAAATCTAAACACCCCTCAAAAGACACTGAGCATGAAAGTGGTCAGATCTAGGTTTTAGATACCAGGTTATAACATTTC<br />TTCTAAGGATGTAGTATTCTCATTTTAATGAAACATTCTCAGTAGTGGTGGTATCCTGTCATTTGTAAAAGACACACAGTGTAAATGTTAAAACCCAGCC<br />TAAATGTTTATATGTTGAAAATGTATAAGTTAAACTGTTGACTTAGAAAAGCTATACTTCACAGTGAGAGAAAAAAAAGTTGACTAGCTTAGGCAGCAGT<br />ATATACAACACTGATCATTTTTTTAAAATCCTGGCAATATCCCAAGCTCTGGTACCTCTAGATTGGACTACCTACTTAGAAGATTATTTACCCAAGTTTT<br />GTTTTTAATCTAAAAAGGAATGGGCCTTTTATTTATAAATATATATGTTGGCTTTAGTTTCTGTAACCTGCCCTTTCAAAGAAAATAATGAGCGGAGAGG<br />TATTGACCAGCAGCCTCAAATGTACCTAAAAGAAGTTCCCAATGGCTTTGTGACATCACTGCCACCTCACAGGCATGACAAAGCCAGCGCCAGGCACATT<br />CCTCCTTTCCAGGAAGGTGTGGTTAAGTGTAAGTGGTGAAAGAAGGGAAACCATTGCTTAATGTCGCAAAGGAGACAGACTGTCCTATGTTGTGCAGAAA<br />GCTCCCACACCAGGTAGGCAAGCTGGCCACCAGCAAGGCCCTCCTATGAGCATGACAGCCTAAAAGTGCAGGCAGGCCCTCAGCTCAACTATTGGTATAT<br />GGAAAATGAGAAATGTTCTGTGAGATAAGAAATGTTTTGTCATTTTTCTCAGATTTGCTCCCAGTCCCCCATCAGCTGCTTTTCCCTTGTATAAAAGAGA<br />TCAAAGGAATATACAGGATCTATTCACAGGTCCCACAAGGAAGGTGGTTGGAAGAGTCACAGATAAGGGTGTTGGGTGAGAAGAGCTGGACTGAGTCCAG<br />AGATTGAAATTACAGGAAGCCCCATTAGTCCAAAGCACTGAACTCGGTGTCCTGTTTCTGCCTTCCAGCCTCCTCCTCATCTTCACCTTTCCCCCTCACC<br />AGTGTTGCTTGGCTAAACCAGTATTTCTTGTGTACTAAAGAAACTGAAAAGCTTACCACAAAAGCAAAAGTAGCTTTCATCCTTTTTTTTTTATTTCATA<br />GTATATTTATTAGAATAAGAGATTAGATTTGTTAAACATCTAGGTTAAAATGGTTAAAAGGATTTTCATACAATTTTAGGCACTATACACGTTGTTTACA<br />ACAGCATTGGTACTTGGATATGGGGAAAGATAAATCCGACATTTTAATATCTTGATCAATTTGTGACATTCAAAATAATTCCATTTAAGAAACATTAATC<br />AAAACTTAAAGAGACATACCACTAAGTATCCCACACAGTATACTGAAAATAAATATAGAAATACAACCAGAAGTCTACAGATCACCACAGTAGACAGACT<br />GGTGAAGCCCCAGCTATCATGGCAGTGAAGGGCTCTGGCTAGATTTGGATGTCAACTGCTGAGTTCTACATGAAAAGCAAATAATAATAATAAAATAACA<br />TGATGTACACTCTCTGATGCTCATTTTCATAGCAGCAAAGCATGCTTCACATGCACTGCCTGTGAAGGATCTCACAAGGCTCCCTCCTAGAGAGAAAGTA<br />TGCCCAGCAAGAATAAAGTACCACCAAATGTCAAAGAATCCCGAAAATACAGGCAGACAGCCAGTCATGGAGCAGGAACAGCAGTGCAATTGTAAGAATG<br />ACTACCCACATTCACCAAAATTTCACTGTAATTCAGCCTGGCACAGGTTTTGATCATCAGCATACACACAAATAGCCCCAAGCACAAAGCCAATCCACTT<br />AGGGGAACAATAATAGTAATAAGAATAAAGACAGTAATATTAAAAATGACAAGAGTAGAATCTTGGCACATGCTGTGTTCTTCATCCTTTGTCACAGGTG<br />AAATGCACATCTGAACAGAGACAGGCATGGGAAGGAGGCCCAAAAGCGACATGGCAAACCACCGGGCAGGGGACTCGCTCTTTGTTGCTTCCCAAACACT<br />TAGACGCCAGCAGCATGGGTTGGTGTGCTGGGCTGGTTAAGGCCGATGGTGGAGCAGAGCCAACCTGCAAAATCCACTTCCTCAGCATCAGATCTCTTGA<br />TAAAAGCATGAACCTGCATGTAAGGAAACGAGAGGACGTGGTGTTAAAAAGAAACAAAAAAACAAAACCCACCAGGAAGGAAAATCCAAGAGTTTCAGGT<br />CTAGAGCTTGTGCTGCACTTGGAAAGAGCACCTGGCACCTGCCCCTGAGCAACAGTGGGGCCAGCTGCAGGCCCAAAGACCTGCTCCACCAGTCACAGCA<br />GCTGTGAGGCCTTGGGCAAGTCACCTCTTGGAGCCTACTCGTGCAGTATGGAGACAGTAACTCTGCCTTAAATGCCTCACAGGCTTGTTAGAAGGGACAA<br />AGAAAATGATGGACTTAGTGCATATTATATACTATATACACCGTCTATGGCTGTCCAGATATTTACAGTATTACTTAGCTATTTCCACTGCCACCAAACG<br />AGACAGCAGGCGGAGAGTGACTCTGGAAGGAGGCTGAATGTAAGATGAGGCAGTCAGTATTAGGGAAAGGCCGCATCCCCATGAAGGGGGTGGGCTGGCC<br />TTTTCTTTCCCATGGCCCCCTCAGGCATTTCCTCTGGCATATGCTTACTCAGGCTGCGGGGGTCACCCCAGCTTTCCCTTAAACTGATGGGAGAGCAAAG<br />GAGACTGGTGTTTGGTATTCTGCAGCCCCAGGCTCAGCTGGACCACAGTGGGCAGGGAATGAATGGGCTCTGGAAGTACTGCACAGATGACTGACAGAGA<br />AGAACAAATGAATAAACAGGTACTGTAAGAATCCGGAATAAATAGACTCACCATGAGTTGCTTCAAATCTGCTCTCTCTGCGGGGTTTTTTATTAAGCTT<br />AAAGGAAGAAAGACAAGGTAAGAGCTGTTGCCTGGCACTGGTTCTAGCTCAAATAACATGTTTGCATGCCTGTCTTCTCTGCACACTAGAGGCCGAGGAT<br />TGCCTGGGCTTGATTCATCCTCCTGTTCTAAGCACAGTATCATGCCCACAGTAAGTTAATACATTCTTGCTGAGTTAAACTAAGGTCAAAAAGCAACGTG<br />CCAATCCCTGGAGAGCAAGTACCAAAAGGAGCAGCTACTACATCCATGATGTAGTTAGACATGCCACATAAGTCTTGGCACTCTAAAAAAGGGCTTATGG<br />CAGCAGCCAAGAATCATCAGACGGGAGGGTAAAGGGCAAAACTCTGCCTGCAGAAGCAATGCTGGTGCTTCCAGAAATGGGGTGGGGAGCCTGACAAATC<br />CAGAGTATACGCTTCCAGAGAACAAGGAGCCAACTTACCATTTATTCACAAAATCTTGAAATTCCAGACTGAACACTCCACTGGGCAGTTTTGGAGGAGG<br />CTGCAAACACATGTTGAGATAAGAAAAATGCCTGGCTCCTTGCTCCAGCCATCTCCTCTCCCCATCCCACCCCTCCCACCAGCCAGTGCTACTTTTTTTT<br />AAAGTCTTCTCTGCAGTCCAAAGGCAGTACTACTCTCATCCAGTCAAGGAAAGGCACAGGTAGAAGGCCAGTGCTGCCTGTTGGGTAACCATGTTGGAAC<br />CACTGATCTCAAATAGCACATTTAGAATTGGGACCAAGTCAAGTCCACTCACTTGTCGGGTGATTTTGAACTAATCACTATTCCTCTATGAGCCTCAGTT<br />TACTCTTCTATGACATGAAGAGGTTGGGCCTAATGATCTCAGGGACCCTTTCAAGCTCTGACACTCTACAATGGTAAATCTTGGAGTGCGGCATGGGAAC<br />GTAACCAGCAATTTACTGGCAGCAACAGCTAGGGGCACGTGCAAACCACCAGGCATAGCCCAGGTCTGACAGCACCTGCAGAAGCAAACCGGTTTTTAAA<br />AATCCCTTTTCTGAGCCCTAGAGAAGCAGTGAAAAGTTAATAAAACATTAACTGACAGAGGGCTGGATCTGGAAGAATGTTACCTGTACATTCCAGAAAT<br />GAGGCTGTTTTCAGATTTTCCCATGGTGATCATGCAGCACTATACAGTACAAGGCTCTGGAGCACTGGGCTCATGGCGTTCCATGCAGTCCAGGAAATGT<br />GGGCCCACTTATGTACCTGGGCTGGGAGCTGTGTGTACCCATGCTGACCCACAGACATAATGTCCATGATGTCACTGCTCTGATGTACAGCCCAAAATCT<br />CGTTTTTAATTTGGGACTAAAAATGAGACACTGATCCCCACCACAAAGCCCAACCTAGTGCTCTTCCTTTGAGGGCCATGTCAGTCTGATCTTAGGTGAG<br />GACTAGAACTCAGCTCTTAGAACAGTGACCCAGAGCAAGCCCCATTCTGCAGACTGTCCCCACTGCTGAGGGAATCAAGGGACCATTCAAGGAAGAGAGG<br />AGACCAGCAGCTTGGCCTCCAGAGGCAGCATCCATTCCTTCTGAACAGGAAAGAGCTAGGCAGCAGAGGGGCTGTGTGCCAGCAGAGGCTGCAGTAGAAC<br />AACTGCCATGCAGCCAAGCCTCCTAGGAGGTAAGAATGGGAGGTGGGAGGTGGCAAGGAAGAAAGAGCACTGGGTGGGAAGGACCTGGGCTACTTTTCAT<br />CTCGGAGGCTCAATTTCCTCACCTGTTTGAAGAGGAACCAATTTGGCCTACCTCAGCAATGCTTGGGAGAATTGCATGGGAAATTAATGTGAAAATTTGG<br />AAGAAAGCAGTGCACACTAGGAGACGCAATGGCGTATCTAACCTCAGATATCCCTTCCCTTAATATGACTACCACCCAGAACCACCTAGCCTAGGTCCCC<br />AGCAGTAGAGGATGGATGGCTTTTTTTCTGACTCCTACAAATGCAACATGCTCTGCCTCCCTCAAATCCTTAAGCAGCGACGAACTAATCCTGAAACTGC<br />TTTTCTACAGCCCATGGTGCTTAGTATAAAGCTGTGCATACAGTAAAGAGAGGTTAAATTAAACTCCCTAGTAGACTGAACCTGTGACAGCGATGTGTTT<br />TTTTGTTTTTTTGTTTTGTTTTGTTTTTCCCAGAGTCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGACTACA<br />GACGTGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCTTGTTGGCCAGGCTGGTCTCGAACTCCTCACCTCGTGTGATC<br />CACCCGCCTCAGCCTCCCAAACTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCCACCTGGGTGTTTTCTTAAGATGAGCAAGTAAATTCCAAGGTG<br />AAGGAAACCAGGCAGTACTTACCTCGTTGACTATGTAATCCAACAACTCAAAAATTGCCATGGGAGGTCGGCTGTCCATTCCGTATGCTACAAATTTTAT<br />AAAAAGAAAAAATACTTCTCAGA

Expression



Full and truncated open reading frames discovered in TCONS_00084682

In silico ORF/peptide predictions
>peptide 1 (98 aa)
MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEASINQTTLELSTKSHVTEEEEEEEEEESDS

>peptide 2 (98 aa)
MCFFVFLFCFVFPRVNLRLPGSSNSHASASRVAGTTDVHHHAQLIFVFLVEMGFCLVGQAGLELLTSCDPPASASQTAGITGVNHCTRPPGCFLKMSK

>peptide 3 (78 aa)
MLIFIAAKHASHALPVKDLTRLPPREKVCPARIKYHQMSKNPENTGRQPVMEQEQQCNCKNDYPHSPKFHCNSAWHRF

>peptide 4 (77 aa)
MGWCAGLVKADGGAEPTCKIHFLSIRSLDKSMNLHVRKREDVVLKRNKKTKPTRKENPRVSGLELVLHLERAPGTCP

>peptide 5 (75 aa)
MGGGRWQGRKSTGWEGPGLLFISEAQFPHLFEEEPIWPTSAMLGRIAWEINVKIWKKAVHTRRRNGVSNLRYPFP

>peptide 6 (64 aa)
MLALVSVTCPFKENNERRGIDQQPQMYLKEVPNGFVTSLPPHRHDKASARHIPPFQEGVVKCKW

>peptide 7 (64 aa)
MFCEIRNVLSFFSDLLPVPHQLLFPCIKEIKGIYRIYSQVPQGRWLEESQIRVLGEKSWTESRD

>peptide 8 (60 aa)
MAPSGISSGICLLRLRGSPQLSLKLMGEQRRLVFGILQPQAQLDHSGQGMNGLWKYCTDD

>peptide 9 (58 aa)
FPGVGGDGVITECRADSSPEVGYVTRQHAEPASGTAQGGGDAAAVEGSPARPAEPPQG

>peptide 10 (58 aa)
MPHRLVRRDKENDGLSAYYILYTPSMAVQIFTVLLSYFHCHQTRQQAESDSGRRLNVR

>peptide 11 (56 aa)
MRSFKNPTIIGISVRIWHWELKTLQDSCGDHNSWLKIKKKKSKHPSKDTEHESGQI

>peptide 12 (56 aa)
MLPVHSRNEAVFRFSHGDHAALYSTRLWSTGLMAFHAVQEMWAHLCTWAGSCVYPC

>peptide 13 (53 aa)
MRLFSDFPMVIMQHYTVQGSGALGSWRSMQSRKCGPTYVPGLGAVCTHADPQT


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT046790 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O75971|SNPC5_HUMAN (Evalue: 1.0E-31)