Detailed information on TCONS_00084682

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding TCONS_00084682 568 282 UTR3 Trans
ENST00000620340 ribosomal protein S6 kinase, 90kDa, polypeptide 6 protein coding TCONS_00084682 553 317 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00084682 539 275 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobiotic) novel protein coding TCONS_00084682 549 300 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding TCONS_00084682 636 295 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding TCONS_00084682 627 302 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00084682 602 309 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding TCONS_00084682 610 300 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding TCONS_00084682 502 315 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding TCONS_00084682 502 315 UTR3 Trans

Sequence

>TCONS_00185519 (7622 nt)
TTTCCGGGAGTCGGCGGCGATGGCGTCATCACCGAGTGCCGGGCCGACAGCAGCCCGGAGGTTGGCTATGTGACCAGGCAACATGCTGAGCCGGCTTCAG
GAACTGCGCAAGGAGGAGGAGACGCTGCTGCGGTTGAAGGCAGCCCTGCACGACCAGCTGAACCGCCTCAAGGTTGAAGAATTAGCCCTCCAATCAATGA
TCAGTTCTAGAAGAGGGGATGAGATGCTGTCTTCTCACACTGTACCTGAACAGTCACATGATATGTTGGTGCATGTAGACAATGAAGCATCAATCAACCA
AACAACCCTGGAGCTGAGCACAAAGAGTCATGTGACGGAAGAGGAGGAGGAGGAAGAGGAAGAAGAATCAGATTCCTAAAGGAGGGGGAAAGCCAGGCTG
GTCAGTTATACAAATTGCATTTCTAAGGCTCAGGCTACTTCTCCTCAAGGAAATCATCTTGCCCTGGGCCCTGTGATCTGCTTGAAAGGAAAGCAAGAAC
TATAAGGAGGATGTGTAGTTGCAAAAATGGCTCCATCGGTAACTCAAGCTTCAGAATGTTATGACATACAGAAAATCAAAGATGCTGTGTCTTAGCATTG
AGTAATATGGGTGGTGCTGTCTGTAATCTGGTCAGATTCAGTTAACTGTTCAGAACAAAATTTCCTCTGAAATACTGTTGAGAAAGTCTGTCATTTGCAA
AAAGAGCAGAGTTTAAATACAAGCCAGTCTTTCCAGTCAACAATGCCTCTTTGAAGAAAACCAATTAAAGACTGTTTGCATGCCGCTGAACCCTTGTGAG
CAGTTAGGACACAGTCTAGGACAGAAAGATGACAAGGGGAAGGACTGAGGGCCGTCTGAGAGCACAAGCTGTTTCTACCTCTCAGAGGCATTGAAATATT
GCATGCTATAAACTGCTTTGTGTATCTGTTACCACCTCTCACTTGAGACATCACTCACTGGTAAAATGTTTTATAAATAAATTTATAAGTAGCCATCATG
GAGCCTGCTGGTTTCTAGATAGCGACAGAGAGAAGCAGCAGTTCCTTCTCTGAGGAAAAGATACAACAGGATGGTTTGAAATCCATTTCTGGTCCTTAAG
AGAGATGTGCCATGCTTGGAAGACTGGATTTTTTGTTTTGTTTTTTGTTTTGTTTTGTTTGAGACGGAGTTTCACTCTTATTGCCCAGGCTGGAGTGCAA
TGGCGCGATTTTGGCTCACTGCAACCTCCCCTTCTCGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCAGAGTAGCTAGGATTACAGGCATGCACCACCAC
ACCCGGCTAATTTTGTATTTTTAGTAAAGATGGGATTTTTCCATGTTGGTCAGGCTGCTCTCGAACTCCCAACCTCAGGTTTTCCTCCCGCCTCGACCTC
CCAAAGTGCTGGGATTACACACGTGAGCCACTACACCAGGCCGGAAGACTGGATTTTTGTTAACAGATGACAGTTACAGAATAAGAGTTTTTACTTAGTA
TCTGAAGTTGAGGTTCATTTCTGCATACTGTCCCTTTTCCACTGACTACCATGAAATAAGTAGTTGCTTAATTTTATAAAATTAATTTCCCCTGCCCAAG
CAACAGTAAAAGCCAAACAAAACACAAAGAATCATGTCAAGCAGAACTTATGTAACAGTTCCCAAAGAAAACAAAGAATACTTTTTTTGTTAATCCACAT
TTCATTGAAGTTATTTTGAGCTGCTTTTAGAGGAAACAGCCAGAAGTTTAAATGAGCATGTTCCTTAGAACACACAATGGGAAGACAGTTTGGGAACAAA
AAGCATCAAGGTACATAAATTTTGGGGGTCTAATTTAAAATATGAGCATGAGTTTTAAAAGCTGGAAAACTTGACTATGAATTCCAGCTCTACCACAAAC
TGGTCACTTGTCTTCTCACCTCTTTGCAACTCACGTTCCCATCTGTAAGGTGAAGATACTCACATCTGCTCTAGCAGTTTCACAGGTTGCTATGAGGTGC
TAATGAGATCATTTAAAAATCCAACTATCATTGGTATCTCAGTAAGAATCTGGCATTGGGAGCTCAAAACACTGCAAGATTCATGCGGGGATCATAATTC
TTGGCTAAAAATTAAAAAAAAAAAATCTAAACACCCCTCAAAAGACACTGAGCATGAAAGTGGTCAGATCTAGGTTTTAGATACCAGGTTATAACATTTC
TTCTAAGGATGTAGTATTCTCATTTTAATGAAACATTCTCAGTAGTGGTGGTATCCTGTCATTTGTAAAAGACACACAGTGTAAATGTTAAAACCCAGCC
TAAATGTTTATATGTTGAAAATGTATAAGTTAAACTGTTGACTTAGAAAAGCTATACTTCACAGTGAGAGAAAAAAAAGTTGACTAGCTTAGGCAGCAGT
ATATACAACACTGATCATTTTTTTAAAATCCTGGCAATATCCCAAGCTCTGGTACCTCTAGATTGGACTACCTACTTAGAAGATTATTTACCCAAGTTTT
GTTTTTAATCTAAAAAGGAATGGGCCTTTTATTTATAAATATATATGTTGGCTTTAGTTTCTGTAACCTGCCCTTTCAAAGAAAATAATGAGCGGAGAGG
TATTGACCAGCAGCCTCAAATGTACCTAAAAGAAGTTCCCAATGGCTTTGTGACATCACTGCCACCTCACAGGCATGACAAAGCCAGCGCCAGGCACATT
CCTCCTTTCCAGGAAGGTGTGGTTAAGTGTAAGTGGTGAAAGAAGGGAAACCATTGCTTAATGTCGCAAAGGAGACAGACTGTCCTATGTTGTGCAGAAA
GCTCCCACACCAGGTAGGCAAGCTGGCCACCAGCAAGGCCCTCCTATGAGCATGACAGCCTAAAAGTGCAGGCAGGCCCTCAGCTCAACTATTGGTATAT
GGAAAATGAGAAATGTTCTGTGAGATAAGAAATGTTTTGTCATTTTTCTCAGATTTGCTCCCAGTCCCCCATCAGCTGCTTTTCCCTTGTATAAAAGAGA
TCAAAGGAATATACAGGATCTATTCACAGGTCCCACAAGGAAGGTGGTTGGAAGAGTCACAGATAAGGGTGTTGGGTGAGAAGAGCTGGACTGAGTCCAG
AGATTGAAATTACAGGAAGCCCCATTAGTCCAAAGCACTGAACTCGGTGTCCTGTTTCTGCCTTCCAGCCTCCTCCTCATCTTCACCTTTCCCCCTCACC
AGTGTTGCTTGGCTAAACCAGTATTTCTTGTGTACTAAAGAAACTGAAAAGCTTACCACAAAAGCAAAAGTAGCTTTCATCCTTTTTTTTTTATTTCATA
GTATATTTATTAGAATAAGAGATTAGATTTGTTAAACATCTAGGTTAAAATGGTTAAAAGGATTTTCATACAATTTTAGGCACTATACACGTTGTTTACA
ACAGCATTGGTACTTGGATATGGGGAAAGATAAATCCGACATTTTAATATCTTGATCAATTTGTGACATTCAAAATAATTCCATTTAAGAAACATTAATC
AAAACTTAAAGAGACATACCACTAAGTATCCCACACAGTATACTGAAAATAAATATAGAAATACAACCAGAAGTCTACAGATCACCACAGTAGACAGACT
GGTGAAGCCCCAGCTATCATGGCAGTGAAGGGCTCTGGCTAGATTTGGATGTCAACTGCTGAGTTCTACATGAAAAGCAAATAATAATAATAAAATAACA
TGATGTACACTCTCTGATGCTCATTTTCATAGCAGCAAAGCATGCTTCACATGCACTGCCTGTGAAGGATCTCACAAGGCTCCCTCCTAGAGAGAAAGTA
TGCCCAGCAAGAATAAAGTACCACCAAATGTCAAAGAATCCCGAAAATACAGGCAGACAGCCAGTCATGGAGCAGGAACAGCAGTGCAATTGTAAGAATG
ACTACCCACATTCACCAAAATTTCACTGTAATTCAGCCTGGCACAGGTTTTGATCATCAGCATACACACAAATAGCCCCAAGCACAAAGCCAATCCACTT
AGGGGAACAATAATAGTAATAAGAATAAAGACAGTAATATTAAAAATGACAAGAGTAGAATCTTGGCACATGCTGTGTTCTTCATCCTTTGTCACAGGTG
AAATGCACATCTGAACAGAGACAGGCATGGGAAGGAGGCCCAAAAGCGACATGGCAAACCACCGGGCAGGGGACTCGCTCTTTGTTGCTTCCCAAACACT
TAGACGCCAGCAGCATGGGTTGGTGTGCTGGGCTGGTTAAGGCCGATGGTGGAGCAGAGCCAACCTGCAAAATCCACTTCCTCAGCATCAGATCTCTTGA
TAAAAGCATGAACCTGCATGTAAGGAAACGAGAGGACGTGGTGTTAAAAAGAAACAAAAAAACAAAACCCACCAGGAAGGAAAATCCAAGAGTTTCAGGT
CTAGAGCTTGTGCTGCACTTGGAAAGAGCACCTGGCACCTGCCCCTGAGCAACAGTGGGGCCAGCTGCAGGCCCAAAGACCTGCTCCACCAGTCACAGCA
GCTGTGAGGCCTTGGGCAAGTCACCTCTTGGAGCCTACTCGTGCAGTATGGAGACAGTAACTCTGCCTTAAATGCCTCACAGGCTTGTTAGAAGGGACAA
AGAAAATGATGGACTTAGTGCATATTATATACTATATACACCGTCTATGGCTGTCCAGATATTTACAGTATTACTTAGCTATTTCCACTGCCACCAAACG
AGACAGCAGGCGGAGAGTGACTCTGGAAGGAGGCTGAATGTAAGATGAGGCAGTCAGTATTAGGGAAAGGCCGCATCCCCATGAAGGGGGTGGGCTGGCC
TTTTCTTTCCCATGGCCCCCTCAGGCATTTCCTCTGGCATATGCTTACTCAGGCTGCGGGGGTCACCCCAGCTTTCCCTTAAACTGATGGGAGAGCAAAG
GAGACTGGTGTTTGGTATTCTGCAGCCCCAGGCTCAGCTGGACCACAGTGGGCAGGGAATGAATGGGCTCTGGAAGTACTGCACAGATGACTGACAGAGA
AGAACAAATGAATAAACAGGTACTGTAAGAATCCGGAATAAATAGACTCACCATGAGTTGCTTCAAATCTGCTCTCTCTGCGGGGTTTTTTATTAAGCTT
AAAGGAAGAAAGACAAGGTAAGAGCTGTTGCCTGGCACTGGTTCTAGCTCAAATAACATGTTTGCATGCCTGTCTTCTCTGCACACTAGAGGCCGAGGAT
TGCCTGGGCTTGATTCATCCTCCTGTTCTAAGCACAGTATCATGCCCACAGTAAGTTAATACATTCTTGCTGAGTTAAACTAAGGTCAAAAAGCAACGTG
CCAATCCCTGGAGAGCAAGTACCAAAAGGAGCAGCTACTACATCCATGATGTAGTTAGACATGCCACATAAGTCTTGGCACTCTAAAAAAGGGCTTATGG
CAGCAGCCAAGAATCATCAGACGGGAGGGTAAAGGGCAAAACTCTGCCTGCAGAAGCAATGCTGGTGCTTCCAGAAATGGGGTGGGGAGCCTGACAAATC
CAGAGTATACGCTTCCAGAGAACAAGGAGCCAACTTACCATTTATTCACAAAATCTTGAAATTCCAGACTGAACACTCCACTGGGCAGTTTTGGAGGAGG
CTGCAAACACATGTTGAGATAAGAAAAATGCCTGGCTCCTTGCTCCAGCCATCTCCTCTCCCCATCCCACCCCTCCCACCAGCCAGTGCTACTTTTTTTT
AAAGTCTTCTCTGCAGTCCAAAGGCAGTACTACTCTCATCCAGTCAAGGAAAGGCACAGGTAGAAGGCCAGTGCTGCCTGTTGGGTAACCATGTTGGAAC
CACTGATCTCAAATAGCACATTTAGAATTGGGACCAAGTCAAGTCCACTCACTTGTCGGGTGATTTTGAACTAATCACTATTCCTCTATGAGCCTCAGTT
TACTCTTCTATGACATGAAGAGGTTGGGCCTAATGATCTCAGGGACCCTTTCAAGCTCTGACACTCTACAATGGTAAATCTTGGAGTGCGGCATGGGAAC
GTAACCAGCAATTTACTGGCAGCAACAGCTAGGGGCACGTGCAAACCACCAGGCATAGCCCAGGTCTGACAGCACCTGCAGAAGCAAACCGGTTTTTAAA
AATCCCTTTTCTGAGCCCTAGAGAAGCAGTGAAAAGTTAATAAAACATTAACTGACAGAGGGCTGGATCTGGAAGAATGTTACCTGTACATTCCAGAAAT
GAGGCTGTTTTCAGATTTTCCCATGGTGATCATGCAGCACTATACAGTACAAGGCTCTGGAGCACTGGGCTCATGGCGTTCCATGCAGTCCAGGAAATGT
GGGCCCACTTATGTACCTGGGCTGGGAGCTGTGTGTACCCATGCTGACCCACAGACATAATGTCCATGATGTCACTGCTCTGATGTACAGCCCAAAATCT
CGTTTTTAATTTGGGACTAAAAATGAGACACTGATCCCCACCACAAAGCCCAACCTAGTGCTCTTCCTTTGAGGGCCATGTCAGTCTGATCTTAGGTGAG
GACTAGAACTCAGCTCTTAGAACAGTGACCCAGAGCAAGCCCCATTCTGCAGACTGTCCCCACTGCTGAGGGAATCAAGGGACCATTCAAGGAAGAGAGG
AGACCAGCAGCTTGGCCTCCAGAGGCAGCATCCATTCCTTCTGAACAGGAAAGAGCTAGGCAGCAGAGGGGCTGTGTGCCAGCAGAGGCTGCAGTAGAAC
AACTGCCATGCAGCCAAGCCTCCTAGGAGGTAAGAATGGGAGGTGGGAGGTGGCAAGGAAGAAAGAGCACTGGGTGGGAAGGACCTGGGCTACTTTTCAT
CTCGGAGGCTCAATTTCCTCACCTGTTTGAAGAGGAACCAATTTGGCCTACCTCAGCAATGCTTGGGAGAATTGCATGGGAAATTAATGTGAAAATTTGG
AAGAAAGCAGTGCACACTAGGAGACGCAATGGCGTATCTAACCTCAGATATCCCTTCCCTTAATATGACTACCACCCAGAACCACCTAGCCTAGGTCCCC
AGCAGTAGAGGATGGATGGCTTTTTTTCTGACTCCTACAAATGCAACATGCTCTGCCTCCCTCAAATCCTTAAGCAGCGACGAACTAATCCTGAAACTGC
TTTTCTACAGCCCATGGTGCTTAGTATAAAGCTGTGCATACAGTAAAGAGAGGTTAAATTAAACTCCCTAGTAGACTGAACCTGTGACAGCGATGTGTTT
TTTTGTTTTTTTGTTTTGTTTTGTTTTTCCCAGAGTCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGACTACA
GACGTGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCTTGTTGGCCAGGCTGGTCTCGAACTCCTCACCTCGTGTGATC
CACCCGCCTCAGCCTCCCAAACTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCCACCTGGGTGTTTTCTTAAGATGAGCAAGTAAATTCCAAGGTG
AAGGAAACCAGGCAGTACTTACCTCGTTGACTATGTAATCCAACAACTCAAAAATTGCCATGGGAGGTCGGCTGTCCATTCCGTATGCTACAAATTTTAT
AAAAAGAAAAAATACTTCTCAGA

Expression



Full and truncated open reading frames discovered in TCONS_00185519

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.