Detailed information on TCONS_00086385

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000406451 histone deacetylase 9 protein coding TCONS_00086385 507 282 UTR3 Trans
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-... novel protein coding TCONS_00086385 1639 589 UTR3 Trans

Sequence

>TCONS_00086385 (3522 nt)
ATTTGCATCTGTATCCGCTGCTCCATCTGCAGTATACGGACATGCTCCACTTCACCCACACTGGGTCATTAAAAGAACAAACAAAAATAAGAACTTGATC<br />GATTTGGGATTTTAAATGGAAATGCACTAAAAATTCCTTAATTCCACCATTCACCGTCTACCATAGAGGAACAGCCCATCTGCACGGAGAGACAGCTACG<br />TAATTCACTGCAGCATTATAATACTGAAAAATTAAAATGAACGAAATGTTCCATAACCGACGAACGGCCGAATGACCGGCGTCTCCACTCCGCGGAACGT<br />TCTGCGAGCGCTAAGGGGATGGCGGGAGTGCATGATTTGGAGCGGGCGGTGAGAAAAGCAAGCTCCCGCCGCCTCTCCGTTTTGGCAACCCGGCTGACGG<br />TCGTTTCGGCTTCTGGGGCCAGCCGTCGGTCTGGGCGAGGGACATAGATCCGGATTCGCATCCTGACTGGCCAACCAACGCTGGCCGAGGTGACCACTCT<br />CCTCGGCATCCGCACCTGCCCTCCAAGGCGTCAGAGAGGCCGGACCCTTGGGTGCTAGGGCTCGTGAGCGCCGGGGCCAAGTTTCCGAGTGCCGCTCTCA<br />GCAGCGCACCAACCGGAAGTGATCGTGTTGTGGCGGAAGGAGGAGCTTTCTGGGAGTAGCCGGTGCTGAGAGAACCGTGGCTGGCAAAGATGATTCAGGC<br />GATTCTGGTTTTCAACAACCATGGGAAGCCACGGCTAGTCCGCTTCTACCAGCGTTTCAAGAAATTCAACAGCAGATTGTTCGAGAGACTTTCCATCTAG<br />TCCTCAAGCGGGATGACAACATCTGTAACTTCTTGGAGGGTGGAAGTTTGATTGGTGGCTCTGACTACAAACTGATCTACCGGCACTATGCTACCCTCTA<br />CTTTGTATTTTGTGTGGATTCCTCAGAGAGTGAACTTGGAATCTTGGACCTCATCCAGGTTTTTGTGGAAACTCTGGATAAGTGTTTCGAAAATGTGTGT<br />GAATTGGATTTGATCTTCCATATGGATAAGGTATATTCTCTTGCAGTTCTCTTCCAAACTAGGGTTACTAGAAAACCAAGAGCCTTGGGCATCTGTAGCC<br />ACCTCTACATCTTCATATTGTTTCTTGTTTTTTTTTACTCTTAAGATAGTCCTAGAACATGTTTTATTTAATAGATTTAATAGTTTGGGTTTTGTTTTGT<br />TTTTGCTAAGATCTACTAACAGTTTTAACGTGCATAAGATTATTACTAGGCCTATATCGTGGTTCATCTGTTCACAGACTGATTTCTTGATATAGGAGAA<br />TGATGTCACTGGCTACTTGGCCAAAGGTGAGATAAATAGTTTTATGCTGATTATAAAATTAGTTTCCTAGTCATAGGCCAGTGACAATGAAACTTTGGAA<br />TAATCATGACGCAGGGGCTTTGACTTAGATAGTAAAATTTATATCTTTCCTAAAGAGTAATATAGTGACTAAGAGATCTGTAATGTAATTCAAGGTCAGG<br />TGATATTCTATAGGAAGGTAGACTATCAGAGGCAGAATTAAAATGGCCCCAAGTAGGTGTTCTCAGATTTGTTTTGCTAGGATAACTGTGACATGGCCTA<br />TGTCCTCATATGCCAAATTAAACTTGGGCAATAGCCAGCAAGGGAATAGGAATTGCCATGTTTATTTTATTCAACTTACCACATGCTGTCCCCTGTGCAG<br />TTTACTGGTGCGTCTTTGGTTTGCTTGGTCCTGGTTTTTCTTCAACTGATTGTTGTCATTATGATCCCTGGCCCTTGGAGAGAGATGATTTTTTAGGAGA<br />CTGCTGCTCATTGCTAAGCCATGATCCTTTATTAACCTTTTCATCATGATGAAGTAGGAGTTTTTAGATCCATCGTTGCTAGCATTGCTGTCTAAAGGAC<br />TTTCTTGTTGTTTTTCAATAGGGTCTTCAGTCTTAGTTGACTCTGTTGAGGTTGGCAGATCCCCACTTTCCAGGCTAATGTAGTGAATGCATTCTTGAGT<br />TTGGATGACATTAGAATGGAGTAAAGTTTTGTCTCTCACCATCTGACATGGCTCTGTGACTCTATCAGCATCCTAGTGCAGGAACATCATGGAACCCTTT<br />TCCTTCTTTAGATACTTAACTTTGGACTCCCTGACAACCTCACGGGGCTTCCAGTATTTACTGATGCTTTTGAGTCACCCTCCCTTTCATATGAAAGGGT<br />TGTATACTTTTTGGAAACTTCAGCGATCTCTTAGCACCCTTTCTTTGCAAGCACTTAGAGTTGTTTTGTACTTTTCATATGTTAAAGATTTGCTATTTTG<br />CAACTTCTGTCAAGGAGAGCCATAGCTCAAATCTAGTTCCCTTTTGTACTAGAGGAACTAGAGTCCCTTTCAAGTATTAAAGAGACTTGAAAATATAGGG<br />GGAATGGAGAGGTGCCTTCTGTAGGCCTTATTGTTATGATTTTAAAATAATATTGTTAAATACAGGCCGGGCGTCGTGGCTCACACCTGTAATCCCAGCA<br />CTTTGGGAGGCTGAGGTGGGCAGATCACTTCAGGTCAGGAGTTTAAGACCAGCCTGGCCAACATGGCAAAACCTTGTCTCTACTAAAAGTACAAAAATTA<br />GCCAGGCGTGATGGTGCACGCTTGTAATCCCAGCTATTCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGGTCGCGCCACTGCTC<br />TCCAGCCTGGGCAACAGAGCGAGACTGTGTCTCAAAAAAAAAAAAACAACCAAATTGTTAAATACAAGGTGTTACTTTCGAAGTTACCACCTAGTGTGCA<br />AAGTGGGTTCTTTGAAGATGCCACCTGTTGCTCACCAGGCTGCAAATGAATTTCTTAACATCTCAGGTGTAGATTCAGGGATTCAAGGATAGATTTTACT<br />AGGAAAGGGGGAGTTTTCTTTTTTTTTTTTTTTTTTTATTGATAATTCTTGGGTGTTTCTCACAGAGGGGGATTTGGCAGGGTCATGGGACAATAGTGGA<br />GGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGTGTTTGTGTCCCTGATTACTTGAGA<br />TTAGGGATTGGTGATGACTCTTAACGCGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGA<br />CACAGCACATGTTTCAGAGAGCACAGGGTTGGGGGTAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCTTAGTGCAGAACAAAATGAAAA<br />GTCTCCCATGTCTACTTCTTTCTACACAGACACGGCAACCATCCGATTTCTCAATCTTTTCCCCACCTTTCCCGCCTTTCTGTTCCACAAAGCCGCCATT<br />GTCATCCTGACCCGTTCTCAATGAGCTGTTGGGCACACCTCCCAGACGGGGTGGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCAGGC<br />AGAGGCGCCCCTCACCTCCCGG

Expression



Full and truncated open reading frames discovered in TCONS_00086385

In silico ORF/peptide predictions
>peptide 1 (98 aa)
MTLNAHAAFKHLFNKAHLAPPLIHLTLSGHSTCFREHRVGGKVTDQQDPKAEEFFLVQNKMKSLPCLLLSTQTRQPSDFSIFSPPFPPFCSTKPPLSS

>peptide 2 (78 aa)
MEPFSFFRYLTLDSLTTSRGFQYLLMLLSHPPFHMKGLYTFWKLQRSLSTLSLQALRVVLYFSYVKDLLFCNFCQGEP

>peptide 3 (68 aa)
MAPSRCSQICFARITVTWPMSSYAKLNLGNSQQGNRNCHVYFIQLTTCCPLCSLLVRLWFAWSWFFFN

>peptide 4 (63 aa)
MFILFNLPHAVPCAVYWCVFGLLGPGFSSTDCCHYDPWPLERDDFLGDCCSLLSHDPLLTFSS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT112178 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q5RDP9|AP3S2_PONAB (Evalue: 1.0E-55)