Detailed information on TCONS_00086385

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000406451 histone deacetylase 9 protein coding TCONS_00086385 507 282 UTR3 Trans
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding TCONS_00086385 1639 589 UTR3 Trans

Sequence

>TCONS_00016418 (3521 nt)
ATTTGCATCTGTATCCGCTGCTCCATCTGCAGTATACGGACATGCTCCACTTCACCCACACTGGGTCATTAAAAGAACAAACAAAAATAAGAACTTGATC
GATTTGGGATTTTAAATGGAAATGCACTAAAAATTCCTTAATTCCACCATTCACCGTCTACCATAGAGGAACAGCCCATCTGCACGGAGAGACAGCTACG
TAATTCACTGCAGCATTATAATACTGAAAAATTAAAATGAACGAAATGTTCCATAACCGACGAACGGCCGAATGACCGGCGTCTCCACTCCGCGGAACGT
TCTGCGAGCGCTAAGGGGATGGCGGGAGTGCATGATTTGGAGCGGGCGGTGAGAAAAGCAAGCTCCCGCCGCCTCTCCGTTTTGGCAACCCGGCTGACGG
TCGTTTCGGCTTCTGGGGCCAGCCGTCGGTCTGGGCGAGGGACATAGATCCGGATTCGCATCCTGACTGGCCAACCAACGCTGGCCGAGGTGACCACTCT
CCTCGGCATCCGCACCTGCCCTCCAAGGCGTCAGAGAGGCCGGACCCTTGGGTGCTAGGGCTCGTGAGCGCCGGGGCCAAGTTTCCGAGTGCCGCTCTCA
GCAGCGCACCAACCGGAAGTGATCGTGTTGTGGCGGAAGGAGGAGCTTTCTGGGAGTAGCCGGTGCTGAGAGAACCGTGGCTGGCAAAGATGATTCAGGC
GATTCTGGTTTTCAACAACCATGGGAAGCCACGGCTAGTCCGCTTCTACCAGCGTTTCAAGAAATTCAACAGCAGATTGTTCGAGAGACTTTCCATCTAG
TCCTCAAGCGGGATGACAACATCTGTAACTTCTTGGAGGGTGGAAGTTTGATTGGTGGCTCTGACTACAAACTGATCTACCGGCACTATGCTACCCTCTA
CTTTGTATTTTGTGTGGATTCCTCAGAGAGTGAACTTGGAATCTTGGACCTCATCCAGGTTTTTGTGGAAACTCTGGATAAGTGTTTCGAAAATGTGTGT
GAATTGGATTTGATCTTCCATATGGATAAGGTATATTCTCTTGCAGTTCTCTTCCAAACTAGGGTTACTAGAAAACCAAGAGCCTTGGGCATCTGTAGCC
ACCTCTACATCTTCATATTGTTTCTTGTTTTTTTTTACTCTTAAGATAGTCCTAGAACATGTTTTATTTAATAGATTTAATAGTTTGGGTTTTGTTTTGT
TTTTGCTAAGATCTACTAACAGTTTTAACGTGCATAAGATTATTACTAGGCCTATATCGTGGTTCATCTGTTCACAGACTGATTTCTTGATATAGGAGAA
TGATGTCACTGGCTACTTGGCCAAAGGTGAGATAAATAGTTTTATGCTGATTATAAAATTAGTTTCCTAGTCATAGGCCAGTGACAATGAAACTTTGGAA
TAATCATGACGCAGGGGCTTTGACTTAGATAGTAAAATTTATATCTTTCCTAAAGAGTAATATAGTGACTAAGAGATCTGTAATGTAATTCAAGGTCAGG
TGATATTCTATAGGAAGGTAGACTATCAGAGGCAGAATTAAAATGGCCCCAAGTAGGTGTTCTCAGATTTGTTTTGCTAGGATAACTGTGACATGGCCTA
TGTCCTCATATGCCAAATTAAACTTGGGCAATAGCCAGCAAGGGAATAGGAATTGCCATGTTTATTTTATTCAACTTACCACATGCTGTCCCCTGTGCAG
TTTACTGGTGCGTCTTTGGTTTGCTTGGTCCTGGTTTTTCTTCAACTGATTGTTGTCATTATGATCCCTGGCCCTTGGAGAGAGATGATTTTTTAGGAGA
CTGCTGCTCATTGCTAAGCCATGATCCTTTATTAACCTTTTCATCATGATGAAGTAGGAGTTTTTAGATCCATCGTTGCTAGCATTGCTGTCTAAAGGAC
TTTCTTGTTGTTTTTCAATAGGGTCTTCAGTCTTAGTTGACTCTGTTGAGGTTGGCAGATCCCCACTTTCCAGGCTAATGTAGTGAATGCATTCTTGAGT
TTGGATGACATTAGAATGGAGTAAAGTTTTGTCTCTCACCATCTGACATGGCTCTGTGACTCTATCAGCATCCTAGTGCAGGAACATCATGGAACCCTTT
TCCTTCTTTAGATACTTAACTTTGGACTCCCTGACAACCTCACGGGGCTTCCAGTATTTACTGATGCTTTTGAGTCACCCTCCCTTTCATATGAAAGGGT
TGTATACTTTTTGGAAACTTCAGCGATCTCTTAGCACCCTTTCTTTGCAAGCACTTAGAGTTGTTTTGTACTTTTCATATGTTAAAGATTTGCTATTTTG
CAACTTCTGTCAAGGAGAGCCATAGCTCAAATCTAGTTCCCTTTTGTACTAGAGGAACTAGAGTCCCTTTCAAGTATTAAAGAGACTTGAAAATATAGGG
GGAATGGAGAGGTGCCTTCTGTAGGCCTTATTGTTATGATTTTAAAATAATATTGTTAAATACAGGCCGGGCGTCGTGGCTCACACCTGTAATCCCAGCA
CTTTGGGAGGCTGAGGTGGGCAGATCACTTCAGGTCAGGAGTTTAAGACCAGCCTGGCCAACATGGCAAAACCTTGTCTCTACTAAAAGTACAAAAATTA
GCCAGGCGTGATGGTGCACGCTTGTAATCCCAGCTATTCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGGTCGCGCCACTGCTC
TCCAGCCTGGGCAACAGAGCGAGACTGTGTCTCAAAAAAAAAAAAACAACCAAATTGTTAAATACAAGGTGTTACTTTCGAAGTTACCACCTAGTGTGCA
AAGTGGGTTCTTTGAAGATGCCACCTGTTGCTCACCAGGCTGCAAATGAATTTCTTAACATCTCAGGTGTAGATTCAGGGATTCAAGGATAGATTTTACT
AGGAAAGGGGGAGTTTTCTTTTTTTTTTTTTTTTTTTATTGATAATTCTTGGGTGTTTCTCACAGAGGGGGATTTGGCAGGGTCATGGGACAATAGTGGA
GGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGTGTTTGTGTCCCTGATTACTTGAGA
TTAGGGATTGGTGATGACTCTTAACGCGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGA
CACAGCACATGTTTCAGAGAGCACAGGGTTGGGGGTAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCTTAGTGCAGAACAAAATGAAAA
GTCTCCCATGTCTACTTCTTTCTACACAGACACGGCAACCATCCGATTTCTCAATCTTTTCCCCACCTTTCCCGCCTTTCTGTTCCACAAAGCCGCCATT
GTCATCCTGACCCGTTCTCAATGAGCTGTTGGGCACACCTCCCAGACGGGGTGGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCAGGC
AGAGGCGCCCCTCACCTCCCGG

Expression



Full and truncated open reading frames discovered in TCONS_00016418

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.