Detailed information on TCONS_00097148

lncRNA-RNA interactions

Number of interactions: 46

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00097148 626 299 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding TCONS_00097148 527 249 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding TCONS_00097148 638 302 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00097148 539 287 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding TCONS_00097148 613 288 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript TCONS_00097148 525 304 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00097148 537 301 CDS Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00097148 512 293 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00097148 561 300 UTR3 Trans
TCONS_00025758 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00097148 609 307 UTR5 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00097148 609 307 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00097148 609 307 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00097148 634 295 UTR3 Trans
TCONS_00032153 long intergenic non-protein coding RNA 959 novel noncoding TCONS_00097148 611 275 noncoding Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00097148 603 304 UTR3 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding TCONS_00097148 629 292 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding TCONS_00097148 638 302 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding TCONS_00097148 638 302 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding TCONS_00097148 638 302 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00097148 512 293 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding TCONS_00097148 660 591 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00097148 601 303 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00097148 619 290 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding TCONS_00097148 635 298 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00097148 567 281 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding TCONS_00097148 672 291 UTR5 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding TCONS_00097148 603 278 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00097148 647 298 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00097148 647 298 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00097148 647 298 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00097148 619 298 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00097148 532 398 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00097148 532 398 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding TCONS_00097148 532 398 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00097148 626 299 UTR3 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitter transporter), member 6 novel protein coding TCONS_00097148 501 300 UTR3 Trans
TCONS_00180671 transketolase novel protein coding TCONS_00097148 712 581 UTR5 Trans
TCONS_00180672 transketolase novel protein coding TCONS_00097148 712 581 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding TCONS_00097148 603 414 UTR5 Trans
TCONS_00215909 O-acyl-ADP-ribose deacylase 1 novel protein coding TCONS_00097148 567 301 UTR3 Trans
TCONS_00215909 O-acyl-ADP-ribose deacylase 1 novel protein coding TCONS_00097148 604 301 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding TCONS_00097148 572 307 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding TCONS_00097148 572 307 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding TCONS_00097148 686 295 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00097148 626 304 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding TCONS_00097148 572 289 UTR3 Trans

Sequence

>TCONS_00251973 (4273 nt)
CATTTGTTCAGGAGAAGAGAATATAATTTTCTCCTGCAGTTGTCATTTACGTAATCCATTTTTCTAGTCTTTTCTCAGGCTAATGATATTCCATACCTTG
ATACAGCTTTTATTTGTTTATTTGCCATAATATGGAGTGATACCTTCGAGAAAATTAGATATTTGAATCTAATATCCCAAAAGTATTACTTAGTTTTCTG
TGTTTCCTTAAACAGAATCATTTCCATTTTCGGTGCAGGTGTTAAGTGTGATGCTTCCATAATACATTTGGATGCTGTCAGCTAAGTTCACTTCTGAACT
AAGGGGTTCCTCCAAATGTTGGCTGAAATTCATCCCAAGGCTGGTCTGCAAAGTCTGCAATTCATAATGGAGCTACTGTACTGGCTATTGGAAGGAGGAG
ATTCTGAAGATAAGGAGGTAAAACCTGTTTAGAAATTAAAAATGAGTTACGATTTAAAGAAAATTCAGATGACTCATTGTGAGTGCTAGTTCTCTTGTAG
GATGCCACTGGAAATGTTGAAATGAAAAATATTCAGCCGTTGGTCTTTGAAATTTCCTGTGATGTGTTTCAATCTAGATGCAAAGAACATGGAAAAATCA
AAGTGCTCGAGTGGTTTAAATATGTTTTGGGTATTCCTGTTTATAGACTATAATACTTTTCCAATTAAAATCCTCAGTTGTCACGCAGAAGAAGGTTAAG
CTGTATTTGATTGCCAGTTTTACTGAAAATGCTTAGTATTTTACAGTATCACCAAATATATTTTGTTTAGCCAAGGTATAGGAAAAATAAAATAAATTGT
ATAGGTTGACTTTTTTCTAAAATGTCTTTATTGGATTGAATGAATGTTTATACCTGAAAAAAAAAGGTTCAAAAAAATTCCTTTTTCTATCAGAGTCATT
CTTTTGACAATCAGATATTAGACTAGGTTTAAAATAACTTTCTAATATGACTCATATTTATGGGAGGAAAAAGACTTGAAAGATATTCCTATGTGTACTT
TAATTTTCTGTAATAGTCCCTCTGGAATAGAATATCTCTTCCTCAAACAAATCTATTGGCTCATTTCATATACAAGAAAAAGTTGCCCTAAATGGCAGAG
TTTCATCTCTGTAAAGAAGGCTGACATCCACTTCCTTCACAGAATCCCTGCATTTGGGTAATTGAGTAATGATAGATTACCTTGCCATTGGGAAATACCT
TGTTGTGGCCTTTGTAGCAGCTATAGGAAGATGGAAGAATTCTTTTGTATAGACAGGTCTCTAGCCTCTTTGGTGTGGACACTGTGAAGGGGTACATCTG
GTGAGAAGGAGTGCTTAGGGAAGGAACTGGGAAGGTCCACAAAGGCTGATGATGACAAAGAATCCAAGGGCTATGATGAATTCTTAAGCTTAGATCTCAG
AGTCATAAAGTAAATTTATTAGGCTAGAGAGATTTCCTTTTTTATTTTTGATCAAACTTTATTTTTTCAGATTGTTAAGTTCACATGCAGTTGTACAAAA
TAATACAGAGATCTTTGAACACTACCCAGTTTCTCCTAATAGTAACTTCTTGCAATATACTGTATAGCACAGCATCACAACCTGGATACTGACATTGATG
CAGTCAAGACAGAGAACATTTATATCATGAGGAGGATCCCTCATTACCGCCCTTTGATATCCACCCCTACTTCCAGACCATCTCACTCCTCCCTTAACCC
TGGCAACCACTAGCATGTTCTCCATTTCTATAAATTTGCCTTTATAGGAATGTTATATAATTGCAATTAAAGTGTGTAACCTTTTGGGGTTTGACTCACC
CGGCATCATTTTCTGGAGATTCAGCTTATATGTGTCAATAGTTTGTTCCCTTTTTTTTAGTTCAGTAGTATTCTGTGGTACGTGTGTACCACATCACTCA
TCAATTCGGACTTCTGGGTTGTATCTGGTATTTGATTATTACAAATAGAAGTACTATATATATATTCGTGTAGAGGTTTCTGTGTGAACATAAACTTTCA
TTTTCCTGGGACAGATGCCCACGAGTGAAAATTGTGAGTCATATGGTAATTATGTAGAGTATTTTTTTTTTGAGACGATTTGTTTATGATTTTAAAACAT
AAAAATATAAGTTGTAGCCAAATATAAGGAAGGATTTTTCCACAATCTAGACTTTATTCTTATTTTAGAGAAATACTTTTGAAAAAATTGCTTTATTGGC
AAACAATTCCTATGTAAAGGAATAAAAGACGCATATACTCTAGGAAAGATGTTGCAAAGCTGACAGGCAACTTTGAGAAAGATGAGGGCAGTTTTCCAGT
GTTACTGGAGACTTGACATTCAAGGATGTATTATGATAGTTTCTGAATTGATAGATTCTTTAGCGTTTGTCACTACCCTCAGGCCTGCAGTTTTTATTTG
TAGAATTAACTCATCTTTACAATGCTTTGTTGAGTGCTGTTGCAGAAAATGCTCATGTAATTCAATTATATGCAGTTAGGAAAAAGAAGTATCTTTTTCT
AGTACATGGCCCCTAAAATGATGACTTTCCACAATGCTGAATGGAGGAAACAGCTCTGTTTCCATCAAACTCTGGTGGAAATTATACAAAGTTATATTAT
GCTTTATGAGACATAGTGAGGTAGTACACAACCATATATGCTATATTATTGGGGAGACCCACTGAAAGAATTTTCAAGGATAATTTTTGCTCTGATTTTC
TATCATGTATATTGACTTTATTGATTGATTGATTGAGATGGAGTCTCACCCCGTCACCCAGGCTGAAGTGCAGTGGTGCAATCTCTGCTCACTGCAACCT
CCGCCTCTCAGGTTCAAGTGATCCTCGTGCCTCAGCCTCCCGAGTAGCTGAGACTATAGGTGTGTGCTACGATGCCCAGCTAATTTTTGTATTTTTAGTA
GAGACAGGATTTGGTAGCCTGGTCTCGAACTCCTGACCTCAGGTGATCTACCCACCTTGGCCTCCCAAAATACTGGGATTACAGGTGTGAGCCACCGTGC
TGGCCAAGTATATTGACTTTAAAACGTTACCGGCTGGGCGTGGTGGTTCACGCCTGTTATCCCAGCACTTTGGGAGCCCGAGGCGGATGGATTACCTGAA
GTCAGGAGTTCGAGACCAGCCCAACCTGGTGAAACCCCGTCTCTACTAAAAATACACAAATTAGCCGGGCGTGGTGGCAGGCGCCTATAATCCCAACTAC
TGGGAAGGCTGAGGCAGGAGAATTGCTTGAACCTGGCAGGCGGAGGCTGCAGTGAGCCAAGACTGCGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAA
ACTCAGTCTCAAAAAAAACAGAAAAAAAAAGTTACCACGGGTGAAACATTGGGCTGGTCACAGTGATCCTTCTAACAGCAGTCAATATTATAAATCTAGC
TTTTTTTTTTGAGTGAGATACTAGGCCCAGGGAACCCGAGTCTTTCAATCCTCATGAATATAGTTTAATCTTTAGCTCATTATGGTCATGACCATAGTTA
AATAAATGACACGAGATAATAAAATAGTCTTTGCCCTTAAAACTGACCTGGGTAAAAGGATGTACACTTGAATCTTTGAATACCAGAATAGTCATTCATT
CATTGAGCCGTGTTGTAGCATCCCATCTTCTGGCACTTCCAGCACTGGGAACCCATCATAAAGAAGGCACTACAGGCCAGGCGCTGTGGCTCACGCCTGT
AATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAT
ACAAAAAGTAACTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGGTAAGGCCAGAGCATCGCTTGAACCCGGAAGGCAGAGGTTGCAGT
GAGCCAAGATCCTGCCATTGCACTCCAGCCTGGGGGATAAGAGCGAGACTTCGTCTAAAAAAAATAAAAATAAAAAGGCACTACAGCACCTGTTCTCTTA
GTGTAGCTCTATTAGCTCTTAGACTAGGGGGTAGGGATGGGAAAAAGTAAAAAGAAACTGAGAAACCAATCTAATTACGCATAATCAGAAATCCAAAGCT
TCCAGAATTCATGAGGAAAAAGAACTGCAGCTGATGGAGTAGGCATTACAGAGAATGAGAGGCTTGCTTTTTTTTTAAGTTTCATTTTATTTGTAATTGA
CACAATAGCACATATTTACGGGATACAGTGTGACATTTTAATACATTTACATATTGTGTAATGATCAAATTAGG

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.