Detailed information on TCONS_00102255

lncRNA-RNA interactions

Number of interactions: 65

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323816 growth arrest-specific 7 protein coding TCONS_00102255 523 290 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding TCONS_00102255 593 305 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding TCONS_00102255 609 287 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding TCONS_00102255 556 268 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding TCONS_00102255 529 290 UTR3 Trans
ENST00000399322 diacylglycerol kinase, beta 90kDa protein coding TCONS_00102255 544 309 UTR3 Trans
ENST00000426391 zinc finger protein 841 protein coding TCONS_00102255 556 268 UTR3 Trans
ENST00000437099 growth arrest-specific 7 protein coding TCONS_00102255 523 290 UTR3 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding TCONS_00102255 608 294 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00102255 545 277 noncoding Trans
ENST00000513143 podoplanin protein coding TCONS_00102255 554 293 UTR5 Trans
ENST00000513143 podoplanin protein coding TCONS_00102255 578 296 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding TCONS_00102255 584 282 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00102255 600 290 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00102255 571 306 UTR3 Trans
ENST00000560870 sense_intronic sense intronic TCONS_00102255 548 268 noncoding Trans
ENST00000594295 zinc finger protein 841 protein coding TCONS_00102255 556 268 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00102255 564 306 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00102255 577 312 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding TCONS_00102255 525 293 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding TCONS_00102255 605 292 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00102255 608 289 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00102255 758 524 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00102255 615 290 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00102255 755 504 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00102255 758 524 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00102255 615 290 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding TCONS_00102255 613 286 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00102255 600 290 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding TCONS_00102255 605 292 UTR5 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding TCONS_00102255 784 447 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding TCONS_00102255 746 504 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00102255 507 225 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00102255 573 269 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00102255 649 290 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00102255 649 290 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00102255 649 290 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00102255 649 290 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00102255 515 267 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00102255 611 284 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00102255 611 284 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00102255 611 284 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00102255 611 284 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00102255 611 284 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00102255 611 284 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00102255 611 284 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00102255 649 310 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding TCONS_00102255 849 489 UTR3 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding TCONS_00102255 600 287 UTR5 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding TCONS_00102255 556 268 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding TCONS_00102255 516 304 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding TCONS_00102255 650 292 UTR3 Trans
TCONS_00163485 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) novel protein coding TCONS_00102255 620 407 UTR3 Trans
TCONS_00163488 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) novel protein coding TCONS_00102255 620 407 UTR3 Trans
TCONS_00191796 G protein-coupled receptor 125 novel protein coding TCONS_00102255 614 290 UTR5 Trans
TCONS_00191797 G protein-coupled receptor 125 novel protein coding TCONS_00102255 614 290 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00102255 614 289 UTR5 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00102255 590 287 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00102255 601 300 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00102255 622 287 UTR5 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding TCONS_00102255 631 290 noncoding Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding TCONS_00102255 602 498 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding TCONS_00102255 602 498 UTR3 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding TCONS_00102255 568 286 UTR3 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00102255 619 281 UTR3 Trans

Sequence

>TCONS_00253055 (5807 nt)
AACATCCTTATCTCAGTAATTGATCTCTTTGGCTGCTCTGAGACTAGCTGGGAATGAACCAAGAGTGAATGAGTGCACAGATGTGGGCAGAGTTTTCAAA
AAGATTTTGAGGCAGCCGGTGGGCTCCGAAACAAAACAGAGGTCACTGGATCCGATTCCCAGTACCATAGAAGTGACTCAAACCAGCGATTCAACCGACA
AGCAGGATCCGGGCCACCCAAAGCCGCGCGAGAGTTTACGTGACGACATCGGCGTCAGCGTCACGGAGGCGTCGGCCACGTTCAGCGGACACGGGAGCAA
GATGGCGATTCCGGGCAGGCAGTGAGTGATCCGGGAGTTAGGGTCAGGCTGGGGGATGAGAAACTACGGCGACTGTATCTTTGGCCGAGGAGTTTTAAAT
GCGCTGGAAGTGAAGGGACTGTGTCGTCAAGGGTAGAGACGGGAAAAAACGAGAAGTCCTGAGGAACATAGATTCCCCTCCCCCGTACATTTTCCCGGAT
GGAAGCCCGAAGTTTGAGGGAGAAACTTGTGAGGAAATAAAGGAAGTTAGGCTGAGGGGCAGAGAGCGAGACTTTTCTATTTTCCAAAAGCTCGGTCTGA
GGCCCCTCAGTCTTGCTTCCTAACCCGCGCTTGAGTTTCTCCCCGCTTGGATGCTCTCAGGGGCAGTGTGAAGAGAGACAGTTCCTGGCTTCCTTAGAGG
GCCTTGTTCTCCTTGGCAGAAGCTCAAGTCCTGATTCCCGCCCTTCCTTCTCGTTTTAGGAATATTGTTCTGAGAAGCCACAGAAAAAGGGTAGGCATAT
AGGAAATTGGGGTATACGTTGCCGCAAAAGAGACAAATACTGTACGTACTTGAAAGTTTTACCTTTGATGTGTAATCCTTACTTTTGATGCGGCCTCCCG
TGATCTCCGCATCTTAAAGGCCAAAACGTGAGAAACTAAAGGAGTTGGATCTGATGGGATGGTTCTCTCAGATGCTCCGAGGCAAAGCACATGATCTTAA
TAAAGTGTAATGCGAACTTGCCCCATGGCTACTTGGGTTTCTCAGTTATCTTTTAAAAATTTTCGTGAGTTACACTATCCAGTCAGTTCTTAGAAACTGT
GTAAGTACACAGTAGGAAAAAAAATCTAGCCATTTTCTTGACTGTTTAGACCACAAGGATAGTTGAAAGCATTTTAAAATCTTTAGTGGACATGAACTAA
ACTTTCCACTACACATGTTTTTTTTTTTTTTTTTTAAATGTTACTGTCACTTCGCCATCTTAAAACATTTCTGAACTTTTCATTTACTTCTCTTCTTTGA
TAAAAATGGTATTCGAGTTTGGCCCGTGTCCACAAATGATCACTTAGAGTAGTAATTATAGAATCTTACGGCATGTTAGAATTTTGAGATCACTGAGAAG
CAAAAACAGTCTGTTACGTGTTCATAAAGCTTATGACATGTTTTGATTTGGTAGCTTCATGTGGAAGAGGTAGTAGATGTATTTGTTAACATTTAAACAT
AAAGGTTTAATTTCTATTTCAAAAAAAATATATGCAGGTATGGGCTTATTTTGCCAAAGAAAACACAGCAGTTGCACCCTGTTTTGCAAAAACCATCAGT
GTTTGGGAATGATTCTGATGATGATGATGAGGTAAGGAAACCTATGTTTTACTCGTGCATGGTTGGAAATGTAAATTTTTTAAAAATTGAACTTGTGACT
CTGATACCTTTGCCTTTGTTATTTGTCAGTACAGTGGAGTATAATTTACAGAATTGTCAAAAAGGAAGGTGTAAAGAAAGCAGCTCCACCGATTTTTTAA
AGATTTTTTTCCCTCTAAAAGCTGCAAACTTTACCTTTAAACAAATACACGGTCTTTTCAGACTACTGAAATTGTCATAACAAAATTGTTGGTGTAAAGA
TCCCTAGGTATGAGTTATTAAGATGTCACCAATTTTCTACAAATTTTTATTAGCAAAGCAGTTTTTAATTTGTTAACCATGAGCTAAGATCACTATATAA
CAGTTCTTAACAACGCTACTTTTTTTTTAAATTCAGTGTCTGCCAAATGTAATTGCTCAGTTATAATCGTGGTAGTGAATAGTTACTCTTGATAGTACTA
CAGTAACATCTAATATCAACATTTTCTATTTTAGCAGCCAAAACTACTTCTGTGAAACCCACAGTTATATATCAGAAACAATCCCAAATGTGTGCTTTTC
TTTTCTCTTTTTTTTTTTTTTTTTGAAACAGTGTCTTGCTCAGTTGCCCAGGCTGGAGTGCAATGCCGCGATCTCGGCTCACTGCAACCTCCGCCTCCTG
GGTTCAAGCGATTCTCTTGCCTAATCTTCCTGAGTAGCTGGGATTACAGGCACCTGCCATCATGACCAGCTAATTTTTGTATTTTTGTAGAGACAGGGTC
TCACCATGTTGGCCGGGCTAGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCTTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCGCACC
CAGTAAATATGTGCTTTTCCAATACTCCCATCATGTTTTAATATTTTTTTTTCTTTTTTTTTTTGAGACAGAGTTTCGCTCTTGTTACCTAGGCTAGAGT
GGGATGGTGCAGTCTTGGCTCACTGCAACCCCTGCCTCCCAGGTTCAAGTGATTCTCCTGCTTCAATCTCCTGAGTAGCTGGGGTTACAGGTGCCTGCCA
CCATGCCTGGCTAATTTTTATTTTTTTATTTTTTTGTATTTTTAGTATTTTTAATATTTTTTGTATTTAGTAGATTTTCCTGCCTCAGCCTCCTGAGTAG
CTGGGATTACAGGTGCCCCACCACCACGCCCAGCTAATTTTTATATTTTTAGGAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCTAACC
TCAGGTGATCCACTTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGTCACCATGCCCAGCCTCTTTTTTTTGAGATGGAGTCTCCCTCTTTCG
CCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCATTGCAACCTCCGCCTCCTGGGTTCAAGCGTTTCTCCTGCCTCAGCCTGCTGAGTAGCAGGGATTA
CAGGAACACACCACCACGCCTGGCTAATTCTTGTGTTTTTAGTAGAGGTGGGATTTCACCATGTTGATCAGGCTGGTCTCGAACTCCTGACCTCAGATGA
TCCACCCACCTTGGCCTCCCAAAGTGCTGGAATTACAGGCATGACCCACTGTGCCTGACCGGTTTTCAGTTTTTATTATATAATAGCATGGGTGGATAAT
TTAACATATTTGATATTTCTTTGCTACTTTTGAAGACATTGGCTCTTTATGGCTCACAGTTTTTAAAAATTGAGGTATAATTTACATATAAAATGCTCAG
ATTTTAAGTGTACAGCTTGATGATTTTTGACAAATGTATATGCCCCAATCAAGATTTAGAACATTTCCCTCTCTCCCAAAAGGCTTTCCATACCCTCCTG
CAGTCAGTCTACCTCCCCACTTGCTACCCCAGACAAATGCTCATATTTCTATCACTAGATTAGTTTTGCCTGTTACAGAATTTCATATAAAAAAAATCAT
ACAGTATGTACTCTTTTATGTCTGACTTACTCCACTCAGTATAATGCCAGATTTATCCATGTAGTTGTAGAATCACATTTTTCTTAAAATGGATTTTTTC
CCCCTTAACAGTGACTTAAGTTTTTCTTCCATTTTTCTGTTTTTATTTCTTCATAAAATATTAGAATAATTGACCATAAGAAATGAATCAAGGTTACTAG
TTAAATCTCCATTTCTGCGTAGCCAACTAGAATATTTTCAAATGGAATATTGAGGAAGTTACTAATTACAACTTTTGAATTTTTAATTATGTCGTTGCAT
TAGTAGATATTTAATACCTACAATAGGTTAAGAGTTGATCAGTTTTGCATCTATATAGCCTATATACTTTTTATTATGTGGTACGCTTTAACAGTTTTTT
TTGGGACCTTATATAGTGTTGCTTTCAACCAGTGTCTAGTCTAGTGGGGAAGACAGACATGTGAACATGAATATAAAGCAAACTGAAATATGAAAAGGAA
ACTAATATACTGAGGATTCCTGTGTGCTCATTATACTTTATTTGATCTTCAGGATCACTCTGATGTATTATTATTCCCATTTTACAGGTCAGAAAATTGA
AGCTCAGGTTAAGTAATTTGTTCAAGGCCATGTGGCTGATAAATAAGTGTCAAGATTGGGATTTGAACACAGGCCTATCTGACCTTCAAACCTATACTAT
TCTTCTGTCTTGCCTTGTTTTAACAGTAGCGTTACAGAATGTGAATGAAATGTAGAGAATGAAATGATTCACTTTGTTGCAGGAAAATCAAGGCAGGAAT
AAGCATTTAAATAACATTCAAGGCTGGTTTAGATTTAAATAGGCAAAAATAGAGGTGAAATAATTTCATTTGGGAGAGAACAGCAAGAAATACAGAATGG
CATACAAGTACAAGGCATTTTTGTGGAATAATGTGGCTGGAGAAGAGGGTATATAGGAAAAAATGTTGCAGATACGGTTGTAACAGGATTGGGCCAGATT
GTGGAGTACCTTAAATTTTTCGTATAAAATTTCAACTTTATATTTTCAAGTAGTTTTTGAGTAATTCGGTGATATCATCACACTTTTGGGAAGATAACTC
TTGAATTGTAAAACAAAGAAAGGGAGAAATGAGAGATGAGTTTAAAAATGCTTGTTAGAAGGCTTTTTTAGTAGTTCAGGTGAGAGATCTCAACCTAGGT
TGAGGTCATTGGGAATTAATGGGGAAAAATGTGAGCGATACCACAGAAATAAGTAGGACCTGGCAGCCACATTGAATATATGGGAAAGAGATGGAGTCCT
GATGCAAGATCTTTTTTTTTTTTTTTTGGTCATCATTTTCCCTCATTAAAAAAATATATAATTCACACACTGTATACTTTACCCTTTTAAAGTGTACAAT
TCACTGTGTGTGTGCGTGTGTGTGTGTGTTTTTTTTTTTTTTTGAGACGGAGTCTCTGTCACTCAGGCTGGAGTGCGGTGGCGTGATCTCGGCTCACTGC
AACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCATACCCAGCTAATTTTTG
TATTTTTAGTAGAGACGGAGTTTCACCATGTTGATCAGGCTGGTCTCGAACCCCTGACCTTGTGATCCACCTCGCCCGGCCTCCCAAAGTGCTGGGATTA
CAGGCGTGAGCCGCCGCGCCCGGCCAATTCACTGGTTTTTAAGAGTTGTGCCGGCATCACCACTGTTTAGAACATTTTCCTCACCCAGAAAGAAACTGTG
TACCCATTACCATCACTCCCCATTCTCCCCACCCCTAAACCCTGGCAACCACTAATTTACTTTCTGTTTCTATGGGTTTCCCTATTCTGCACATTTCATA
TAAATAGAATCATGCAATAGGCTTTCTTTTGTGTCTGACTTCTTTCACTTAGCATGATGTTCTCAAGATTGTAACGTGTCAGTACTCTTTATTTCTTTTT
TTATTACTGAATAATATTCCATTGTATGAATGTACCATATTTTATCTATCAGTGGTAGGCATTTGGGTTTTTCCCAATTTCTGGCAATAATGCTGCTATA
AATACTTGTGTATAGGTTTTTTGTGTGGATATGTTTTCATTTCCATTGGATATTCTATTGGATATGTACCTAGGATGGAAATTTCTGGTTCATATGATAA
CTCTGGTT

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.