Detailed information on TCONS_00102887

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375120 OTU deubiquitinase 3 protein coding TCONS_00102887 576 299 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00102887 595 273 noncoding Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense TCONS_00102887 509 311 noncoding Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding TCONS_00102887 502 308 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00102887 611 296 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00102887 611 296 UTR3 Trans
TCONS_00075339 latent transforming growth factor beta binding protein 2 novel protein coding TCONS_00102887 577 317 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00102887 686 560 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00102887 504 309 UTR5 Trans
TCONS_00151860 activin A receptor, type I novel protein coding TCONS_00102887 527 315 UTR3 Trans
TCONS_00159938 zinc fingers and homeoboxes 3 novel protein coding TCONS_00102887 553 307 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00102887 600 288 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00102887 600 288 UTR5 Trans
TCONS_00214410 processed_pseudogene novel protein coding TCONS_00102887 700 561 UTR5 Trans

Sequence

>TCONS_00214410 (2905 nt)
TGGCTCACTGCAGCCTTGACCTCTGGGGCTCAAGTGATCCCCCCACCTCAGCCTCCTGACTGAGATTACAGGCATGCACCACCACGCCTGGCTAATTTTT
GTATTTTTAGCAGAGACAGGGTTTCACTATGTTTGCCAGGCTGGTCTCGAACTCCTGACTTTGTGATCCGCCTGCCTCAGCCTCCCAAAGTGATGGGATT
ACAGGTGTGAGCCACTGCGCTGGGCCTCCAACAGCATACTTTCATCTTCACTGTTTTTTTGTTTTTGTTCTTTAAGATGGAGTGTCACTCTGTCCCCCAG
GCTGGAGTGCAGTAGCGTAGTCTCAGCTTACTGCAACCTCTGCCTCCCGGATCCAAGAAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACAACAGGC
ATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTACC
CACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACACAGCCTTCTTCACTGTTTTTTTAGCAACAGTCCTCCTTAAATTGGCCAGGA
CTAAAATTCTGTAAGATTCCAATTTGGGTTACATCCTAGTTTCTACCAGGGGAAAAATGTGATATTAGTAATAATGAGATGCACATTAGGGCCAGGTGAG
TTGGCTCACACCTGTAATATTCCAGCACTTTGGGAGGCCAAGACTGTAGGATCACTTGAGGCCAGGAGTTCAAGCTCAGCGGGAAATATAATGAGACTCT
GTCTGTATAAAAAAATTTTAAAAATTAGCCGGGCATGGTGGCGTTCGCCTGTGGTCTGAGCTACTCAGGAGGCTAAGGTGGGAGGATGGTTTGAGCCTGG
GAGATTGAGGCTGAAGTGAGCCAAGATTGTGCCACTGCATGCCAGTCTTGAGTGCCAGAGTGAGAAAAAAAATGCATATTAGCCATTTGCCGCCAGATTG
AGCTTCTGACCCAGAAGCAGTGCTAATTTTTACATTTCTTCCTCTTATATTCTATGAAAGCCAGGAGAAACATAGGAAAGGCGACTTTCTAATCCCATAA
AATGTGTCAGAGCAAAATGGTAGGAACCCTGATAAAGCTGACAGTAAAAGAAGTTTAGAGCTCCATGTGTACCCGAGATTTTTCTTCCTGCGAGCAGTGT
AAGAATCAGCCCTATGTGATTATGGAAAATCCCCAATTCCAGGGAAGGTGACTCAGTGGGAAGAGAGTGCAAAAGAAGTTAGAGCAGAGCCCATGATGCT
CAGCTCACCCTCACACCCCCTCCAGCCCTGAGTTTGAATTGGAAATTCTGCCTCTGCCTCTGGGTTAGTCTGGGCCTCTAATAGTCTTGTGAGCCAGAAG
AACTTCAGGTCAAAGGATCAATCTCTTTCCTCTCTCAAATTTTCTTTTCTCCCTCTTCCACTCCCCTCTCTCCTTTAGACACAGATGAGAACCTAGAGAA
GAGACAGAAATGGAGTATTGTGGTCAAAATTCTGATTGCTGTCACCCTGTTGCTCAGTGGAGTTGCCATTATAGTATTTGTAATTTTTGAAGTCCCATGT
CCTGTAAGTTTGCTGTTGTATTGAATCCTTGAACTTGACCCATAAAGACTTTCTTCTGTTCCAGAGGCAGCTTGGCATAAGGAGAAAAGCATAGACTTTG
GAATTTGAGGAGATGTGCCACTCACACTCACTAGCTGAGTGGTGTTGGGAAAGTTGCTTGACTGTTCTAACCTCAGTGGCCTCATGTGTAAAATAAGTCT
CATGATATTTGCCTCTCATGGTAGTTATAAAGATTGAGATTCTGTGTGAAAGGCACCTGGCACACAGGTGCTCACTAAATGCAGTTCCTTTCCTCTGCTG
TACTTAGACATTTTCTAGGAAGGATAGGTCCAATAGGACTGAATATTTTATTTAGAAGAGATGGCTTCCTTTAAGTTGCCCAACAAGAGGTTTGGAAGAA
AACCAAATGCTTACCAGCCACTTCATATTAATACCAGTCATTTTCTCCCTTCAGTATCAATGCCTAGGAGCCAGGAAGCTGTGCCAATGCCAGTGGTTGT
GGAGATGGCAAAAGAAGGGAGGCCAGCCACCTGGGACAGCTGAATCCAAGCCTGACTCTCAGCCCCAGAAGGAAAGTGTTCTCTGTGTGGTTTATGTCAT
TTGCTTAAAGAAGGTGGGGTAGGGGCCGGGCGTGGTGGCTCACACCTCTATTCCCAGCACTTTGAGAGGCTGAGGCAGGTGGATCACCTGAGGTGATCGA
GACCAGCCTGACCAACATGACGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGGCACATGCCTGTACTCCCAGCTACTCGGAAGGCTGAGG
CAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCATTGTACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTCAAAAA
AAAAAGAAAGAAAAAAAGAAAAACAGAAAATGGGGTTAATATATAAGTGCTAGGAGATTCGTCCCTAAGAGGACTGTGAAAAAATATTTTTTTTAATGTG
CTGGGAACAGGGAGCTGCTTCAGTTATGAAGCAAATGTGGGCAATCCTTCTTATGTCAGGAAATAGGTAGGATTTTATCCTACTGTTTTCCTAACATCAG
TCCAGACATGATACAATAGGGTGCTTATTGAATACACATACCTCTGGGCCCCATATAAACTGAATCAGATCATTTAGATTGGAGTCAAGAATCTTACTTT
TAAGATTTTTAAGGCCAGGCCTGATTCATCATGCCTGCAATCCCAGTGCTTTGGGAGGCAGAGGCAGAGGCAGGAGACTTGCTAGAGTCCAGGAGTTTGA
GACCAG

Expression



Full and truncated open reading frames discovered in TCONS_00214410

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.