Detailed information on TCONS_00112418

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 767 617 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00112418 524 371 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding TCONS_00112418 677 593 noncoding Trans

Sequence

>TCONS_00171146 (3057 nt)
GCTAGCTCCACCCTATGCGGCTTTTCTCCTACCCGACGCTCTTCACTCTCAGCTCCCTTCCCGGCGGCCTTTGCGGGAACAAGATGGCAGCCCTCATACC
TCAAGGGTTCTCTTGTTTATCGAGGGTTTTGGGCTGGTGGTCTCGGCAGGTGGGTAGGGACGGGGCCGATAGGACCCTAGGGGCTACAGGAGGAGGACAG
AGTCGAGGGAAATACTCTCTGTGCAATTGTCCTTGGTGAGCTGGGACAATACGAGTCATACCTAGGCCGGGGAAGAGGCTTAGGTGGACAGGACCTAGCT
GCGGAGCTCAGTGGTCGAATGGGGATAGCCTAGACAGGGCCATGAGAGCGAGTGAATTAACGGGTATTAAGTTTTTCCGGATTGGTTTGGGTCTGTCTGG
CGAGGAGATATTAAAGGAGAGACAAGTAATGGGTTGGAAGGTGGACTCCCTAATCTTCGATTCTTATAAGTGAACTACGTTGAAGAGTAGCCGAAAATGA
GGGCGTCCCATATTGTCACCGCCCCGTCTGAGCAAACCTCATGATCAGAGAGAAAAGGTCTCCTGGTCTTTCGAGGGTTTATTGGTCAGTTGGGTGCTAA
AACGACAGAATAAAGTTTACAGCGAGACTCCCGATAGGATGAGCAAAATATCACGAGTACATATGGAGCAGATGCCTACAAGAGGACTTTGCTTATGCTT
TAAGCATAGCATTCAGGGCCAGGCGCGGTGGTTCACACTTGTAATCCCAGCACTTTGAAAGTCCGAGGCAGAAGGATGGCTTGAGCCCAGGAGTTCGAAA
TGAGCCTGGGCAACATATAAGACCTGGTCTTTACAAAAAAATTTTAAAATTAGCCGGATGCGATGGCGCACTCCTTAGTCCCAACTACTTGGGAGGCTGC
GGTGGGAGGATAGCTAGAGCCCAAGGAGGTCAAGGCTGCAGTGAACCGTGATCGTGCCACCGCACTCCAGGCTAGCGATCTGCCTCAAAAAATAATAAAG
AATAGTATTCTGCCCATTTCAGTATTGAGTTGGTGTTTCCCCATCACCATCAGTTTTTGAAACTTGCTTTGATCAACTCAGTATCCGTAGGTGTTAGCAT
AGTCCTGTACTGTGGGAAGTTCTAAAGGAAAGCCTTTAGTAAATGTGATGTTAATAAAGGTTGCTAACTGTCTTCTATTTAGAGACACCCATAAGTATTA
AGGTCCTAATGCATTTTTTCCCTGTGATATTGTTTTATAATTGTTCCTGAAGCATTCTTTGGATATTCCCTCTCTATAGTGCTTTGCTTAGAGTTTGTAA
AAGATAGTAGATCTTTTTTCTAGGTTCCTAACCTTTCCTTTACCTTCCAGCCAGTTCTGGTGACTCAGTCCGCAGCTATAGTTCCAGTAAGAACTAAAAA
ACGTTTCACATCTCCTATTTATCAACCTAAATTTAAAACAGAAAAGGAGTTTATGCAACATGCCCGGAAAGCAGGATTGGTTATTCCTCCAGAAAAATCG
GACCGTTCCATACATCTGGCCTGTACAGCTGGTATATTTGATGCCTATGTTCCTCCTGAGGGTGATGCACGCATATCATCTCTTTCAAAGGAGAGATGAT
AGAGAGAACTGATAGAGAGAACTGAACGAATGAAGAAGACTATGGCATCACAAGTGTCGTAGGTGTCTGAGACAATTGGGTATTGGTATTAGAATAACAA
TTTTTTGTTGCTACTTTATCCCAAAGAGACCTTTTTGGGTTAATTGGGTTGGGTGTCATTCTCTTAATAACATGATGGTATTTTCTCCTTTGTACTAGAG
TCTGTATTTAATGCAGAATAATGTGGGCTTCCTGATTCTCAGCATCCCTGCCTTTATTGGTAATTTTTGTCATATCAGTTAGGGAGTTGACTTTGGAGTG
TATAGGATCCTTTTTTAATCATATATTTAATTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGACTAGAATGCAATGGCACGATCTTGGCT
CACCGCAACCTCCGCCTCCTGGGTTCAAATGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTGT
ATTTTTAGTAGAGATGTGGTTTCTCCATGTTGGTCTGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGAGGCCCGCCTTGGCCTCCCAAAGGTGCTG
GGATTACAGGCGAGAGCCACCACGCCCAGCCCTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGAGACGGAGTTTCACTCTTA
ACTCACCGCAACCTCTGCCTCCCGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGACTACAGACGCATGCCACCATGCCCAGCTAATTTT
TGTATTTTTAGTAAAGACGGGGTTTCACCATGTTGGCCAAGATGGTCTCTATCTCTTGACCTCGTGATCCACCCACCTCGGCCTCCTGAATTGCTGGGAT
TACAGGCGTAAGCCACTGCGCCCAGCCGACCTGGCTAATTTTTAAAAGAAATTTTTGTAGAGACGGGGTATCACTATGTTGCCCAGGCTGGTCTCGAACT
CCTGGGCTCAAGCAGTCCTCCCACCTCAGCCTCCCAAAATTCTGGGATTACAGGTGTGACCCGTCACACCCAGCCAGTCTAGCTCTGACTGTATCTATCT
TTTTTTTTAAATTTGTACTGTTCATTGCAGAGCAGGGCTACCCCATAGGCCAGTGTGCCCAGAGTAGCCGCTGTCACTATATGTAAATCATGTATAGGTT
TATGTGCATAAGTATATTGAGTAAGTATGAATTCTTCACATGGCCATGACTTATTTCTCTACATACAGATTTTATTGGCTGGGTGCGGTGGCTCACGTCT
GTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAATCGAAAACCAGCCTGACCAACGTGGAGAAACCTCGTCTCTACTAAAA
ATGCAAAATTAGCCGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCAAGAGGCT

Expression



Full and truncated open reading frames discovered in TCONS_00171146

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.