Detailed information on TCONS_00112418

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00043422 vacuolar protein sorting 37 homolog C (S... novel protein coding TCONS_00112418 767 617 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting prote... novel protein coding TCONS_00112418 524 371 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 h... novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 h... novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 h... novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 h... novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 h... novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 h... novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 h... novel protein coding TCONS_00112418 680 610 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding TCONS_00112418 677 593 noncoding Trans

Sequence

>TCONS_00112418 (3058 nt)
GCTAGCTCCACCCTATGCGGCTTTTCTCCTACCCGACGCTCTTCACTCTCAGCTCCCTTCCCGGCGGCCTTTGCGGGAACAAGATGGCAGCCCTCATACC<br />TCAAGGGTTCTCTTGTTTATCGAGGGTTTTGGGCTGGTGGTCTCGGCAGGTGGGTAGGGACGGGGCCGATAGGACCCTAGGGGCTACAGGAGGAGGACAG<br />AGTCGAGGGAAATACTCTCTGTGCAATTGTCCTTGGTGAGCTGGGACAATACGAGTCATACCTAGGCCGGGGAAGAGGCTTAGGTGGACAGGACCTAGCT<br />GCGGAGCTCAGTGGTCGAATGGGGATAGCCTAGACAGGGCCATGAGAGCGAGTGAATTAACGGGTATTAAGTTTTTCCGGATTGGTTTGGGTCTGTCTGG<br />CGAGGAGATATTAAAGGAGAGACAAGTAATGGGTTGGAAGGTGGACTCCCTAATCTTCGATTCTTATAAGTGAACTACGTTGAAGAGTAGCCGAAAATGA<br />GGGCGTCCCATATTGTCACCGCCCCGTCTGAGCAAACCTCATGATCAGAGAGAAAAGGTCTCCTGGTCTTTCGAGGGTTTATTGGTCAGTTGGGTGCTAA<br />AACGACAGAATAAAGTTTACAGCGAGACTCCCGATAGGATGAGCAAAATATCACGAGTACATATGGAGCAGATGCCTACAAGAGGACTTTGCTTATGCTT<br />TAAGCATAGCATTCAGGGCCAGGCGCGGTGGTTCACACTTGTAATCCCAGCACTTTGAAAGTCCGAGGCAGAAGGATGGCTTGAGCCCAGGAGTTCGAAA<br />TGAGCCTGGGCAACATATAAGACCTGGTCTTTACAAAAAAATTTTAAAATTAGCCGGATGCGATGGCGCACTCCTTAGTCCCAACTACTTGGGAGGCTGC<br />GGTGGGAGGATAGCTAGAGCCCAAGGAGGTCAAGGCTGCAGTGAACCGTGATCGTGCCACCGCACTCCAGGCTAGCGATCTGCCTCAAAAAATAATAAAG<br />AATAGTATTCTGCCCATTTCAGTATTGAGTTGGTGTTTCCCCATCACCATCAGTTTTTGAAACTTGCTTTGATCAACTCAGTATCCGTAGGTGTTAGCAT<br />AGTCCTGTACTGTGGGAAGTTCTAAAGGAAAGCCTTTAGTAAATGTGATGTTAATAAAGGTTGCTAACTGTCTTCTATTTAGAGACACCCATAAGTATTA<br />AGGTCCTAATGCATTTTTTCCCTGTGATATTGTTTTATAATTGTTCCTGAAGCATTCTTTGGATATTCCCTCTCTATAGTGCTTTGCTTAGAGTTTGTAA<br />AAGATAGTAGATCTTTTTTCTAGGTTCCTAACCTTTCCTTTACCTTCCAGCCAGTTCTGGTGACTCAGTCCGCAGCTATAGTTCCAGTAAGAACTAAAAA<br />ACGTTTCACATCTCCTATTTATCAACCTAAATTTAAAACAGAAAAGGAGTTTATGCAACATGCCCGGAAAGCAGGATTGGTTATTCCTCCAGAAAAATCG<br />GACCGTTCCATACATCTGGCCTGTACAGCTGGTATATTTGATGCCTATGTTCCTCCTGAGGGTGATGCACGCATATCATCTCTTTCAAAGGAGAGATGAT<br />AGAGAGAACTGATAGAGAGAACTGAACGAATGAAGAAGACTATGGCATCACAAGTGTCGTAGGTGTCTGAGACAATTGGGTATTGGTATTAGAATAACAA<br />TTTTTTGTTGCTACTTTATCCCAAAGAGACCTTTTTGGGTTAATTGGGTTGGGTGTCATTCTCTTAATAACATGATGGTATTTTCTCCTTTGTACTAGAG<br />TCTGTATTTAATGCAGAATAATGTGGGCTTCCTGATTCTCAGCATCCCTGCCTTTATTGGTAATTTTTGTCATATCAGTTAGGGAGTTGACTTTGGAGTG<br />TATAGGATCCTTTTTTAATCATATATTTAATTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGACTAGAATGCAATGGCACGATCTTGGCT<br />CACCGCAACCTCCGCCTCCTGGGTTCAAATGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTGT<br />ATTTTTAGTAGAGATGTGGTTTCTCCATGTTGGTCTGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGAGGCCCGCCTTGGCCTCCCAAAGGTGCTG<br />GGATTACAGGCGAGAGCCACCACGCCCAGCCCTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGAGACGGAGTTTCACTCTTA<br />ACTCACCGCAACCTCTGCCTCCCGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGACTACAGACGCATGCCACCATGCCCAGCTAATTTT<br />TGTATTTTTAGTAAAGACGGGGTTTCACCATGTTGGCCAAGATGGTCTCTATCTCTTGACCTCGTGATCCACCCACCTCGGCCTCCTGAATTGCTGGGAT<br />TACAGGCGTAAGCCACTGCGCCCAGCCGACCTGGCTAATTTTTAAAAGAAATTTTTGTAGAGACGGGGTATCACTATGTTGCCCAGGCTGGTCTCGAACT<br />CCTGGGCTCAAGCAGTCCTCCCACCTCAGCCTCCCAAAATTCTGGGATTACAGGTGTGACCCGTCACACCCAGCCAGTCTAGCTCTGACTGTATCTATCT<br />TTTTTTTTAAATTTGTACTGTTCATTGCAGAGCAGGGCTACCCCATAGGCCAGTGTGCCCAGAGTAGCCGCTGTCACTATATGTAAATCATGTATAGGTT<br />TATGTGCATAAGTATATTGAGTAAGTATGAATTCTTCACATGGCCATGACTTATTTCTCTACATACAGATTTTATTGGCTGGGTGCGGTGGCTCACGTCT<br />GTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAATCGAAAACCAGCCTGACCAACGTGGAGAAACCTCGTCTCTACTAAAA<br />ATGCAAAATTAGCCGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCAAGAGGCT

Expression



Full and truncated open reading frames discovered in TCONS_00112418

In silico ORF/peptide predictions
>peptide 1 (74 aa)
MRLFSYPTLFTLSSLPGGLCGNKMAALIPQGFSCLSRVLGWWSRQVGRDGADRTLGATGGGQSRGKYSLCNCPW

>peptide 2 (59 aa)
ASSTLCGFSPTRRSSLSAPFPAAFAGTRWQPSYLKGSLVYRGFWAGGLGRWVGTGPIGP

>peptide 3 (51 aa)
LAPPYAAFLLPDALHSQLPSRRPLREQDGSPHTSRVLLFIEGFGLVVSAGG

>peptide 4 (50 aa)
MPGKQDWLFLQKNRTVPYIWPVQLVYLMPMFLLRVMHAYHLFQRRDDREN


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT054310 (Evalue: 2.0E-134)

Best hit to Swiss-Prot:
sp|Q9BRJ2|RM45_HUMAN (Evalue: 4.0E-45)