Detailed information on TCONS_00113968

lncRNA-RNA interactions

Number of interactions: 40

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000448214 antisense antisense TCONS_00113968 630 275 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00113968 589 275 noncoding Trans
ENST00000513143 podoplanin protein coding TCONS_00113968 534 270 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding TCONS_00113968 619 274 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00113968 619 274 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00113968 604 273 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00113968 604 273 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding TCONS_00113968 628 273 UTR3 Trans
TCONS_00030165 antisense novel protein coding TCONS_00113968 630 275 UTR5 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00113968 595 278 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00113968 621 274 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00113968 621 274 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00113968 619 274 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding TCONS_00113968 602 264 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding TCONS_00113968 616 279 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding TCONS_00113968 616 279 UTR3 Trans
TCONS_00088780 synaptotagmin XVII novel protein coding TCONS_00113968 611 271 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00113968 534 255 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00113968 509 267 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00113968 606 275 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00113968 606 275 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00113968 606 275 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00113968 606 275 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00113968 606 277 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00113968 607 278 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00113968 572 252 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00113968 598 274 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00113968 577 283 UTR5 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding TCONS_00113968 633 275 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding TCONS_00113968 633 275 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00113968 606 304 UTR5 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00113968 525 259 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding TCONS_00113968 619 270 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding TCONS_00113968 610 276 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00113968 620 271 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00113968 620 271 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00113968 620 271 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding TCONS_00113968 618 275 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding TCONS_00113968 647 276 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00113968 600 257 UTR3 Trans

Sequence

>TCONS_00253055 (8706 nt)
CTCATTCTGTCACCCAGGCTGGCATGCAGTGGCAAGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAG
TAGCTGGAATTACAGGCATGCACCACCATACCCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCACGTTGGCCAGGCTGGTCTCAAACTC
CTGACCTCAGGTGATCCACCCGCCTCAGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGCCACCACATCTGGCCTCACTATACATTATTTAATTTAGTTC
TCACTAATGCCTCTGAAGTTGATATACTTAAGTTATAAATAGAAATATACTAAGGAACGTAATTGGACATTCACAAGTCAAGTTCTAATATGGCATTGGA
ATCCCAATGGTGAAGGATTCAAATGCCTATATTAGAACTCTGCCTAATAATGACTTTCACTGGTTAGCTCTGACCTTCTGTGTATCTGGACCCCCTGATC
CTCCTACCATATATTAATATTCAAATGCCAGTCAAGGACCAACAGAAGCTAACAAAAGTGTCTGGACCAGCATACAGGAAGAGGAATAAGTGACAAAAGA
AAAACTCATGTGAATTTCATAGAATAGTAGCATTAAATGGCAGATTGAAAGAAGTATAAAAAAGAGGTATGCATGTAAGAAGACAATTTTGTAGCTTAGG
AAATTGAAACAGTCACAAAACTACTGATAGAAATGGGGAAGTTGAAAAGGAAAGTTTATTTGGAGGAGATGCTAGTATTAGTTTTTGACTTAGTATATTA
GATAAAGCAGAGTATACCCAAGTAGATACTTTCTGTAGAATATTTTAAAAGCAAGGAACCCAGAGAAGTAGATGGAGATAATGCATACTTTGGGAATCAT
TAGGATGAAGTTGAGGATATGCAGAAGAGAGATGGGGGAGCAAAGAAAAGCAGAGATTTAGGGTAGCAAAATTAAGCAGTACACCCAAGTAGAGAGTGCA
GGATATAAAGGAGAAAAAAGGTATCTCTTTAGTTGGACCCAAACTGCTTGTACACTCTAAGTACAGTAGTCCCCCTTTATCTATGATTTTGCTTTCTGCG
GTTTCAGTTACCCTTGGTCAACCATGGTTGAAAAATATTAAATAGAAAATTCTAGAAATAATTTATCAGTTTTAAATTGCACACTGTTCTGAGTAGCATG
ATGAAGTCTTGTCCGATTCTTAGAGAGGAAAACAGATATGTGCATCAACCAATGACATTGGCCCATTTAATATTAAGCAACAGGATCAACAACATGGGTA
ATATCCTTTCCCAGGGGTGATACTGGGAAGCAGGGATATGGAGTCATAAGTGTTACCCTTCCCTTACACTGATGATTGTGCATTTATTTAGCCCCTGGTA
ATCTGGTTCTTCCCACATCTTTACTAATACTCTTAGAACAACCTTTTCATTGCTTCTTTTTTGCCCTTCCACCTGCACCTGCATTTATGACAAAAACTTA
CCTTTTCTGCACTCCTTTTCTTTAGATTTTTTTTGTCATAATAATAATAAATTACAGTGTCTTGAAAAAAACTTAAAGACCCCTCAATGCCTTGACAATT
GTTTAATTTAAACAATTTTAGAAGTCAAATTATGTAGGCAGGGAAGATTTGCTCTCTTCTAATTGTATCTTGCACGTAGTTAGGCATAATGCCTAAGCAT
AAGTCCAGCTTCACAACAATCACTATTAGAGGCCAACTTGGAAATAGGGAACTGGAACAAATGACAACTTAACTCAGTGCTTCAGATATGATAACTGTAG
CTCCCTAAAATATCAGATGTAAATGTAAAAGAGAAACTGCTCATGCCCTCTAAGTACAATAGTCCCCCTTCACAGTGATTTTGCTTTCTGATGTTTCAGT
TACCTTTGGTCAACTGTAGTTCTAAAATATTAAACGGAAAATTCCAGAAATAAATAATTCATATGTTTTAAATTGCATGCTGTTCTGAGTAGCATGATGA
AATCTTGCCCTGTCCTGCTTCCCACCCAGGAAGTGAATCATCCCTTTGTTTGGTGTGTCCACACTGTATATGTTACCCATTAGTCACTTAGTAGCCATTT
CAGTTATCAGATTAAAAAAACATATTATGTATAGGGTTTGGTACTATCCAGGTTTCAGGCATCCACTTGGAGTCTTGGAATATATCCCCTGTGGAAACGG
GAGACTACCGTATATACATATAAAATTGAGATTTTGAATTTCTTTTATATCATGCTGTTCCTGGGAATGGAACCTGCCACTAAGGTTAACAAAACATGTT
TGCTTGTCTCTTTGCTTCTTAAATCAGGTGAATGCTTCTAGAGTTTTTCTTTATTTCCTGGAAACGTATCTTATAATGTTTGTATAATTTGTAACAATTG
CAACAGCTTACTGATGTGTTTTCATCTTTCAGGATGACATAGTGCTGGATCTTGGTTTTATAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCGT
TTCTCCTTTTATCGGCATGAGCAGCATCAGCGATTATAAAGTAAGAGGGAGAGAGAGGAAATTAGATTGAGATTGATTTTATTTGACTGTAGTAATTGCA
ATTTTATTGTTTTATACACACACAGTTGTACTTTGGTTAATGTTTTTACACATACATTACAATCTAATATCAGTATAGATTATAGTAAACACATGATTTC
AAAGAGGTCAGAAAGTTTACCATTTAGCACAATAAAATTGCCACAGCTGTAAGGGAAATCATGCTAAATAAACTTCAGGGATGAAGATGTGGTACTGTTT
GATCCATGCAGTTATTTCACAGTTCCAAAGGGAATTTAGATTTTTAACTATAGCATGAAATGTCAGACATACAGTGTTTCCAATTATTTAACTACGCTTT
AATAAACTGGGCTTTAAAAATATATAGTGTAGTCATCTTCATTAATCTGTATCAATGGGTAAATTAACTTTAAAAATAGCTGAGACTTTTCTGTTGAACC
AATAACTACACATTTCCATTGGAGATGCTAGATTTTTAGGAGGATGCTTTTTGTCACACAGACACTATAACATACTATTTCTAAAATTTATTAAACAATT
TTTTTTACATAACCACAAAATCTTTTCAAACTAAGATCCCTTCCTCTATCCCTTCTATTCTTTGTCAGAAAAATGTTCAATCCCAGTTATGGATTTCAGG
CCTCTGGCCTTCAGCATACTGGTGTGGACAGGCTCTGGTGGACATTCCATTATACTTCTTGATTCTCTTTTCAATACATTTAATTTACTACTTCATATTT
CTGGGATTCCAGCTTTCATGGGAACTCATGTTTGTTTTGGTAAGTGATCATTTTTTCCACAAGCCAATTATAATAGTAGAATCAAAATGAAAATTCATTT
TCATGAATGTTTTGTCATTAGCAAAAGGCATGTAATATGCAAGAAAATAAGAAAATTGCCTTAGGCAGCTTTATGACCTGATTATCTCCCCTCCTCTTTC
CCTCTATGACCTGCCATTTCTAATCTTGCCATTGATCCTCATTATTTGCAGGTGGTATGCATAATTGGTTGTGCAGTTTCTCTTATATTCCTCACATATG
TGCTTTCATTCATCTTTCGCAAGTGGAGAAAAAATAATGGCTTTTGGTCTTTTGGCTTTTTTATTATCTTAATATGTGTATCCACAATTATGGTATCAAC
TCAATATGAAAAACTCAACTTAATTTTGTGCATGATTTTCATACCTTCCTTCACTTTGCTGGGGTATGTCATGTTATTGATCCAGCTCGACTTTATGAGA
AACTTGGACAGTCTGGACAATAGAATAAATGAAGTCAATAAAACCATTCTTTTAACAACCTTAATAGTAAGGAACATTTTCTACCTAAATATATATATTG
CATAAGATTCATAGCCCCGTGAAATCTTATTCAAGGTATGCCAAATTTAAATGTCTTAAAATACCCACTCTTTCTGTATTTTCCATTCCAATATAATGGC
AGCAAGAACTAAAGATATTTTTAAAATAGATTCACAGATAATATAATACATACTAGAACATTTAAAGGTTTGGTTGCTGTTATTGTGATAGACATTGTTG
ATATGTATCCAAAGACAATTTGAGGCAGTATGTAAGAAATGCAGCATATGGTGTATGGCTCAGAATCAAGTAAATATGTGTTAATAACAACTAATTTGAA
TAATGAGGAGGAAAGGAGAAAGATTAAATGAAATTTTATAGTGGGGAAAGACAATGAAAGCGAATATAAATGTTATTTCTGTGTATTATGGCAAATGAGG
CAGAAGGAGGAAACATACTCTTGTTTGCACACCTCTTGTTTCCTCTTTAATAGCAGAACAGCAGTTTATCAAGGAAGAAACCTCTAAATTTGTTTTGATT
TATAAACTTTTATACATTTTTACCTGGGTCTTTGTATAATGAATGTATATTTTTCCTGTTTTGTAAATACATGCAGAGATGTTCCATATATAGTCATTTT
TAATTGACCATTGAATTCTAAAGGCATACAGTTGTCCAGCTGGGGAATATATGTTCATTGCAACTCTGACACAGCAAACAAACCCTGGAACCTTCAAGAC
TTAATAGGGATTTATTTTTCAAATAAATTCTATTGTGTATTTGGCTGCGCACCTCCATTTGGTGGCTGTGCTTTTTGACACCCCTCAATCTTCAGGGTTG
CCTTTGCAGTGGAAGAAAAGGTTAGAACATTAGACAAGATGGGACTCCAAAATCCTCATGGGAAAATGGAACTAAAAGTTGAAAATAAAAAAATATAAAT
TTTGGCCAGGCGCAGTGACTCACGCCTGTAATCCCAGCGCTTTGGGAAGCCGAGGTGGGTGGACCACCTGAGGTCAGGAATTCAAGACCAGCCTGGGCAA
CATGGTGAAACCGCATCTCTACAAAAATACAAAAATTAGCTGGGCGTGCTGGCATGTGCCTGTAATTCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG
ATTGAGCCAGGAGATGGAGGTTGCAGTGAGCTGAGATTGTGCCATTGCACTCCAGCCTGGGCAACAGAGAGAGACTCCGTCTCATATATATATATATATA
TGTATATGTATATGTATATGTATATGTATATATGTAATTTTTTCAACATAAACCCCATCAAAGTGAGGACACTTTTGTAAGCAACGATACCAATCATTTA
GTTCATTCCTACAGAACTGAGGATCCTGGGAATTTAACCTTGTCATTGAAGTATCTTTTACGTTACTAACTGAACAAAAATGGGTGCCATTTACATATAT
TTTAAGATTAGGAAACAAAAAGAATTCAGAAGGAGCCAAATCAGAACTGTAGGTGGATACCCCTCAATAATTTCCCAAAGGAACTCTCACAGAATTGCCC
TTGTTTGATGAGAGAAATGAGCAGGAACATTGCCATGATGGAGAAGGACCTTCTAGTAAAGATTTCCTGGATGTTTGTCTAACTTTCTCAAAACACTCTC
ATAATAAGCAGATGTTATCATTCTTTGTCCCTCCAGAAAGTCAACAAACAAAATGCCCTGAGCATCCAAAAAACTGTTGCCCATGACCTTTGCTGTTGAC
TAATTCACTTTTGCTTTAACTGGACCCACTTCTACCTTTTGGTAGCCATTGTTTTGATTGTGATTTGTCTTCAGAATCATACTGGTAAAGCCATGTTTTA
TTTCCTGTAAACAGTTATTCAAAAAAATTGCTTCAGAATCTCGATCCCATGTGTTTAAAATCTCCATTGAATGCTCTGCTCTTGTCTTCTGCTAACCTGG
GCACAACAGTTTTGTCCTGCACTAAGTAGAAAGTTTGATTAACTTTAATTTTTCAATCGGAATTATGTGAATTGAATCAGTTGAGATGTCTGTGATTTGA
CTATTGTTTCTGCTGTTAATTGTCAGTCCTCTTCAATTAGGAGATGAAAGAGATGAATTTTTTCCTCTCAAATTGATGTGGATGGTCTGCTGCTATAGGA
CTTATTTTCAACATTGTCTTGTTCCTTCTTAAAACCACTTAACCATCTGTAAGTTGCTAATTTCTTTGGGCCATTGCCCTCATAAACTTTTTTACAGCAT
CGATGATTTCACCATTCTTCCTTCCAAGCTTCTCCATACACTTGATGTTTGTTCTTGCTTCAGTTTTAGCAGAATTCATGTTCTGATAGGGGCTCTTTTC
AAATGAATGTACCTATTTTCAAATGAATGTACCCTTCTTAGTACCTCAAACCAGATCCTGTTCAAACATATTATAAGAAGTTAGGATGAGTTTATTTTGT
TGCCCCCCAAATTTGAAATCCACACATAGGTTTTTCATCATATGAATTTTTCATGGTATTTTTGAAGTCCCCTTGTTTTAACGGCCAGGCCTAGAAGCGG
CTTTCGTCACATCCCACCACATTATACTTCATGGCTATTTACCTATTTGTTTCTAGTCAGTGACCTGTGGTGGTAAAAACAACTGCAATTATTTTTCACA
TATAAGTTTTTTCAGCTTTTCAAATTGTAATAAAAAGACACGTAACATAAAATTTACCATCCTTATGATTTTTAAATATATAGTTCAGTTTTTTAAGCAT
ATTTACAATGTTGTGAGAAGAATCTCCAGAACTTTTAATCTTGTAAATCTGAAACTGTATAGCCATTAAACAATTTCCCTTTTCCCCTTTGCCCAAACCG
GTAATCACCATTCTACTTTCTGCTTCTATAAATTTTACTACTTTATATATCTTATATACATGAAATCATAAAGTATCTGTCTTTTTGTGACTAGCTTATT
TCACTCTGTATAATGTTCTCAAGGTTTATCCATGTTGAGACATATGTCAAGATTTCACTCCTTTTTAAGGTTGAATAATATTGAATTATATGTATATACC
ATAATTTAAAAAATCTATTCATTCTGTCAATAAACATTTGCATTACTTCTACCTCTTGGCTATTGTAAGCTATGAACTTGGGTGTGTTAATCTCTCTTCA
AGATGCTACTTTCAGTTCTTCTGGATAAATACCCAGAAGTGGGAGTGCTGAATTATATGGTAGTTCTAGTTTTATTTTTTGAGGAACCTCCATACTGTTT
TCCATAGAAATTGCACCATTTTGCAGTCTCACCAACAGTGTACAAGAGTTCCAATTTCTCCACATCCTTACCAACACTTATTTTTTTATATAGTAGTCAT
CCTAATGGATGTGAGGTGGTATGCCATTGTGGTTTTCATTTGCGTTTCATTGACATTTAATGTTGGCCATTTATATATCTTCTTTGGAGAAATATTTATT
CAAGTTATTTGGTTTTTTTGTTTGTTTGTTTGTTTTTCTGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCTCTGCAACCTC
CGCCTCTTGGGTTCAAGTGATTCTCCTGCTTCAGCCTCCTGAATAGCTGGGACTATGGGTGCATGCTACCACACTTAGCTAATTGTTGTATTTTTAGTAG
AGAGGGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCCTGACCTCATGATTCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCC
ACCGTGCCCGGCCATTATTTGCCCATTTTTAAATTGGGTTATTTGAATTTTTGTTGTTATTGAGTTGTAGGAGTTTTAAAAATATATTCTGAATATTAAC
TCCTTATCAGATATATGATTTGAAAATGTTTTCTTGTATTCTGTAGGTTATCTTTTCACCATGTCAGTTGTGTCCTTTGATGCACAGAATATTTTAATTT
GATGCAAACACATTTGTCTATTTTTGGTTTTGTTGTTTGTGTTTTTAGTGTCGTATTGAATAAATCGCTGTCTAGTCCAATTTTATTAAGTTTTTTTCTA
TGAGTTTTATAGTTTTAGGTCTTCCATTTAGGTCTTTGATCCATTTTGAGTTAATTTTGTGTATAATATAAGGCCTCCACTTCATTCTTTTACATATTGA
CATCAGTTTTCTTAGCACTATTTGTTGAAGAGATTGTCTTTTTCACATTGAGTGGTCTTGGCACCCTTGTTGAAGATTATTTGAGCATATATGGGAGGGT
TTATTTCTGGGTTTTCTATTCTATTCCATTGGTCTATTTTAAAATAAAAATTTTATAGCTGATTTATTTATTTTATTGTCTCCCTTTTTAATGTAATGAT
GGCCACATTAAGGCAATTTGGAACAACTTGGGAATGATTTTATTTTGAAAAATTATTTTACTGGATATACAATTTTTGGATACTTTTTTTCTTTCAGTTC
TTTGATTACATCATCACACTTTCTCCTGGCCTCCATTGTTTCTGAAGAGAAGAAATTGTATTGTTGCTTCTCTCTGAGTGATGAATCCTCTCCCACTTAC
TGTTTTCTCTGCCTTTGATTTTCAGCAATCTGACTCTGATGTGTCTAGATATGGATCTTGTTGTAATTATCTTACCTATGATTTGTTAAGCTCCTTGAAT
GTGTATATGAATATTTTTTAAAACAAATTTTGGAAGTTTTGGGCCATCATTTCTTAAAAAAAATTTTCTGTTCTTTCTCTCTCCCCTATCTTTTTGGAAC
TACCATTACATATATTTGGTATGCTTGATAATCTTTGAGGCTCTGTTTATTTATTGCTCATCATTTTTCTTTCTGTTCTTCAGATCAATTATATAATAGA
AAGTCTG

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.