Detailed information on TCONS_00119298

lncRNA-RNA interactions

Number of interactions: 20

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding TCONS_00119298 503 253 UTR3 Trans
ENST00000368324 synaptotagmin XI protein coding TCONS_00119298 611 292 UTR3 Trans
ENST00000513738 poly (ADP-ribose) polymerase family, member 8 protein coding TCONS_00119298 516 300 CDS Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding TCONS_00119298 503 263 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00119298 527 259 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00119298 601 297 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00119298 609 292 UTR3 Trans
TCONS_00032151 long intergenic non-protein coding RNA 959 novel protein coding TCONS_00119298 523 275 UTR5 Trans
TCONS_00034642 CD82 molecule novel protein coding TCONS_00119298 604 301 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding TCONS_00119298 604 301 UTR3 Trans
TCONS_00046540 sestrin 3 novel protein coding TCONS_00119298 622 298 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00119298 601 297 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00119298 570 289 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00119298 610 300 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding TCONS_00119298 666 302 UTR5 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00119298 634 288 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00119298 634 288 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00119298 547 296 UTR5 Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding TCONS_00119298 600 297 noncoding Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00119298 605 298 UTR3 Trans

Sequence

>TCONS_00240688 (9451 nt)
ATTGTCTTTTTCTCTCTCTCTCCTTTTTTGGTTCAAGCAATTTTCATAATTGCTTCCTTCATAGATTTTTTTAGAGTAGATCTAAATGCTACAAATTTCC
TTATTTTCTTGATCTAAGAATACATTTGTTTGCCCCTTTATTCCCTTATTCTAGATAGTTTTGCCAGATAGTAATTACAGTTGACATTTCCTTTCTTTTT
TTCAGCACATGGAAATTGTGCTACTTCCTTCTGGCATAAATGATTTTTGATGAGAAATCACCTGTGATTTGAAATGGTTTTCTTTTATAGGCAAGGTGTT
GCTTATCTCCTGTGGCTTTTAAGATGTTTTCTTTGTTTTCATTTTCCAGAAGATTGATCATAATTTATTTTGGAGTACAATCTTTTTGAGTTTATTCTGT
TTGGGGTTCATTCAGTTCTTGAATTTGTAGGCATGTATCTTTTAACAAATTTGGGAAAATTTCAGCCATTATTTCTTCAGATAGTTTTTTCAGCCCCACT
GTTGTGACTTTTTTAGCTTCTCTTCTGAGTCTTTAATAACATGACCATTAATTTATTTGTTGTACTCTCAAAAGTCCCTGAGGTTCTACTCTTTTTTTTC
TTCTTTTGGTCTATCTTTCACTAAGATTTCTATTGTTTTATCTTCAAATTCACTGATTATTTTTTCTGTCCCCTCCAGTCTGCTATGGAGCCAATTCACT
GAGGTTTTTGTTTTCTTTTTTCTGATATTATATTTCCTAGCAGCCTAAGATGGCTGCTTCTAGAATAAAATAGCTGAGATTTTACAAATCAATCAAATTT
CACAGATTTCTAATTAAGTAGTACAAAATACTAATTATTTTCCTGCAACTTAAAAGTCTGAAAATATTTGAAAGACAGACTTGAAGTTTGACCCTGAAAA
TTTCATTCTTCCTAGGTCTAAAATTACCTTTTGGTTCTACTTTATGTCTTCTATTATTTTGCCAGTACGTATTTTATTCATTTGTTTCAAGTATTTTCAT
AATTGCTCATTAAAGACATATATTGGCTGCTTTAAAATTCTTGTCAGATAATTCTAGCAACTAGGATGTTTGAAGCAAAAAGAAAACTCAGGAAACACCA
TCGTGTTTTTTTTTAGCCTCAAGGTTCTAGCCAGTCAGTCTTTTTATTGCTACCTTTCAGAGTCTTCTAAATTATTTATATTAACATATAAATATATCTA
CATATAATATTTATATTATATCTATATTTCCAAGACTGTTAGTTGTGTTTAGCATAATGAATACAAAGAAGGGTATTTACATCTGGAATGTTGAGGAAAA
AGAAATAAAGTAAAAGAGAAGTAAAGGCAGTATTCTTCTTTCTCTTTTAAGTAAAAAAATGTGGGAAATCTGAGACTTTCTTTCCTAGCTGGGATAAAAA
AATAGCGACTATTTTATTAATTTTTAAAAATGGGAATCTACCATCTCAATATATATAGGGCAAAAAAGAATGTGTGATTTATCAGCTATGTTCACATGTA
ATCAAAGGTCCATTAAGTTAGGGTTCGGAGTGCTAGTATGCTGAACAATACAAGAGATTTGAGTAATTCAATGGGATCAAAGTAAGATGGCTGCTTCTAG
AATAAAATAGCTGAGATTTTACAAATCAATCAAATTTCACAGATTTCTAATTAAGCAGTATAAAATACTAATTATTTTCCTGCAACTTAAAAGCCTGAAA
ATATTTGAAAGACAGACTTGAAGTTTGATCCTGAAAATTTCCTTCTTACATTATTTATGTACACAGATTTGGGAACAGACGAGAAAAATAGCCAAGTTCT
GAAAACTGTAATAGAGACATAAAGTAGAATTTAGAAGACTTCATATTCCATGAGCCATCAGCCTTTAGTGGGTTCCTCCTCCCTTTGTCTATGAAGTTAT
TTTTCACTAACTGGTAAAGGTGCAGAAATTATTATTCTGAGCCTTTATACCTTAACAAAATAGGCTAGTTTTCTGCATGCTTTGCTGTCAGTCCTCATCC
AAATATAAAACTAGAATCAGATTCCAGCATTTCCAGCTGATAGGGGATGACCCATACAAAGTCAAACCTAGGAAGAGAAGCTTTACAAAGCCAGAAGAGC
AGGACTTTGCTATTTTAAGTCTGGGAAATAATGTAGGAAATGATTTTGAGACATTGAGTACAAGAAGAAGTTTAATGTCTTCACACTGCTGAATATACCA
GAGATTCTGAAGTCCTTGGGCTGACAAATGAATAAAGTGATTTTTATGATTCCTTGATTAGCAAACAGAAATATAGATTCAACACAAAATCATCGAGTAC
ATTTATCATTTATACTCCATCATACTATCTCATACAATGTATACCATTATAGGGATACTCTTGTCAATATATTCTTACATGGAAAATAAATTCTCAACAT
GTTTGAAAAGCATCTCAATGTTTGTTACCAGAATTATGTGGATTCTCTGTTACATTGTATGTAAACTCTAACATGTCTAAAGGGATCTCTCAATGACAGA
GACTAAGTGGGAGCATATAAGAAGCAAAGTCATTATGGTTAGTATCATTGAAGGAGTGTGAGAGTAATGATAAGAATTATCTATTCTGTAGATATTTTTG
AAGGCTATTATTTGATTGTGTGGGGTTACTAGGAACACAATAGGAGGGCAGTCCACCAGGTCCTTTTTAAAATGTTTATGCCGCAAAATGGAGAGTCACA
GCATCGAACTTGTTTCATAAACCTGACTCTGTACACAAACTTAAAGTTCCTTAAAAGAAGAGGAGTCCATATACTCTTGTAAAAAGACAATCTAAGACCA
ACAGAGATTACACTCTAAGACTTCTTCCTCCATTTCCCACAATCCCTAGACTAATGGAATACAAGAAAATGTTAAATCACCAAAAATATCAAGATTTTTA
GAACTCTGGCTCTAAGAACACTTGTTCCTATCTGAAATAATTAATAGAATAACTAAACTGATTCTCTTACTTCATGGAGGAAGAACTTATAGAACTGGTG
AAATGTGAACCATAGGAGATTTACTGCTCCCAAAATAGTAAATCTCAAAGTATATCATAAGCCTGTGGGAGTTTCAGTGGTGAGTGCAACTGTTAAGACT
TGTAAGATGTAGGGTAGATAATTACTGTACATCCTCATTACATCTCCATGTGTCCAAATACAAAAAAAAAAAAATACCTGTGACATTGAAGAATAACAAT
GAATTACATGATAAACACCAGTTGCACAAATGAATTTCTCACTAGAGCAAATTTGCATTGCCCCGGCACCTAGTGACAAATGTTTTGTCATTAGTCTGAT
AAACAGAAAACAGAGGGAACAGTTAACTTGCACAACACAAGTGTAAAATTTCACTCTTACCAACATGCTCCAGTGTTCCTCATACTACTACATAAAGAGA
TGAAAAACAAGGGCCATTGTGTCAATTGGGGTGATTGATTTTGACTGTTAGGAAAATATAGGTTCTTCAACCCAATTTCGCCAGGGAGAAGTTACAAATA
GAACTCAGGGGAGCTATTGGAGCAATCTCTAATAGTACATGGGCTAATAATAAAAGTTAATTAAAGAATAATAGGCAAAGTAATCCATACTGTTATTAAT
CAGGATAGTGGAATAGTGGACATCTTTGAAAGGAGTCGTGACTTGAAGAAAATTCAAGGAAGACTTCTAGAGAGCTAGTAAGTGTTTATTTTAGGTTCAG
GGGATACATGTGCAGGTTTGTTACGTGGCAAATTTGCATGTCATGGGTGTTGTTTGGTTGTATTATTGTATTATTTCATTTTCATGCTGCTGATAAAGAT
ATGCCCAAGACTGAGCAATTTACAAAAGAAAGAGATTTAATGGACTTAGACTTCCACATGGCTGGGGAAGCCTGGCAATCATGGAAGAAGGCAAGGAGCA
ACAAGTCTCATCTTACATGGATGACAGCAGGCTAATAGAGCTTGTGCAGGGAAATTCCCCTCATAAAACCATCATACCTTGTGAGACTTATTCACTGTCA
TAAGAATAGCACAGGAAAGACCTGCCCCCATGATTTAATTTCCTCCAGCTGGGTCCCTCTCACTACACGTGGGAATTCAAGATGAGATTTGGGTGGAGAC
ACAGCCAAACCATATCATTAGTACACAGATTATTTCATCACCCAGGTAATTAGCCTAGTATCCAATAGGTACTTTTTTTGATCCTATTTGTTCTCTGCTT
CTGATAAGCTGAGTTGCAAGCTAAAGGCAAAGAGTCATTGGATGAGAATGGAGGGCAAGATTCTTAAATACCAGCAATTCTGTTCAGATTCGTTTTAGAA
ACAAAGCAGTGTCCATTGTAATTTTCCTGTTTCGTGATCTCATGGTTATTTATTCATATCTTTATTAATTTGTTTTGCATTCCTACTATTCTTACTATAT
TTTTGTAAAGTGTGGCCTTGTTGGTTAAATTGATCTTTTAGTTAATATTTTGCAGAAAAGCAAGACGGTTATGATAGATGAGTATGCCCTACCCCAAAAT
ACTGGACATACAAGTTGAGTAGAACAACAGACATGAATTTGAATTATTTCCTTTGAGAACATGCTGAGTGTGTTTTTTTGATTATAAGAGGGATGGTAAC
CATATCCAAGGAGGGATTAGTTTTATATAAGTAGGAAAGACAAGTATCTGTAGATGATAAGCAGGTAAAGGAATTTATTAAGTATTTGTGGCTGGGCATG
GTGGCTCACACCTGTAATCCCAACACTTGGGGAGGCCGAGGCGGGTGGACCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCC
ATCTCTACTAAAAATACAAAAAATTAGCCAGGTTTGGTTGTGGGCATCTGCAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCGCTTGAATTTGGG
AAGCAGAGGTTGCAGTGAGCCAAGATCGTACCATTGCACTCCAGCCTGTGCAACAAGAGCAAAGCTCCATCTCAAAAAAAAAAAAATAATAGTTATTTGC
CATTTTTACAGACTAACTTAATGGTCCTTCCTATTTAAGAATAATCCTCAATAATGTTTGGTATTGGTGGGAAAAAGACTAATGGTCCTCCCTATTTAAG
AATAATCCTCAATAATGTTTGGTATTCATGGGAAAAAGAGTCCAACCACTTTTTAGTAAAGCTATAGAAAAGTGGTCATCTCTCTTTAATGCTTTGCAGA
AATAGGAGAAAACATGATTAGGTCATGGGCAACTTAATGTTTTTATACAAGACTCTATACCTGGGATTTGTAACTGAAGCCTAAAGACAGGTTAGAATTA
AAACTGGATAAATGCCAAGATAGAGGAGTGTCTAGTGCATTGGCAGCAGTGGTAATATGGCATGATAGTTCCCAGTGGTTTTTCTGCTTTCTGCTTTTTT
CCTTCTGAAATTTGTTTTGGATATTGTTTTCAAAGTTTGCTATTGCAAGTGCTAGTTGTGTCTCTAGTTATGTCTATGAGTGTCTTACATCTTTCAAATG
TATTTTTTATTGCCTAAAATAACTAGAATCAGTTTCTGAGGCTTACAACAAAAACCTTGACCATACCCACACATTATCTAAATGGATTATTATAATGAAC
TTGGGAGGCTGATATTGTTATTCACAATTTACAGAACAAAAACAGACTCTTTAGAGGAGTTTAAATAACTTACCCAAGGTTATAATCTTTTTAAGTATCA
GACAAGGAATTTTAATATTGTCTTTCTAATTCCAATTTCCCATTTTAACCATTATGTGACACCACTCATAGGAGAAAAAAGCCTGCCTACTTCTTTGTCC
AGGAAACTCAGGAACCAGGGAGGATGTCAAGTGACTATGCTTCTTAAAATTCTGAAATGTAACATATATTACAATGCCATATCATCAATGCTTTCTGCAT
TGAGCTATGAACTCAAATACTGAATGAGCATTTTCAAACAATTTGTTTCTGCCTCCTAATGCCACCTTTCCTTCCTCATTCTGAATTAATTTTACAAATA
CTAGATATGGGCATAAAGTATTTTAAGACTCTCAGAAATAAACTGCACACATGATCAAATCAAGCCAGAATTGCCAGTTTTTAGGTTATTGCTTCCATCT
TAATGTCCTTTGAAATAACGATTCTGACTTTAATGCATGTGCTAAGATACTTCTTTATCGTTTAATAATACCATTTAACTATTATATGCCAAATTCTATG
CTAAGTCCTAAAAGTATAAAGACAAATACCACATTGTGCCTCTCTTTAAGAGCATAAAGAATTTTAAGAAGGAGAGATCTATAAACATATAACTCTTTGT
AATATTCTAAAGTCTGGAATCTACAAAGTGTGCAATTAAAATAAAGAGAAATAACACTTATAACAGCAATGGGAAAGAATGGGATTCAGGGAAGATTTTC
TAGAAGAGTTGCCATTGGAGGTAGATATTAAAGGATGAAGAAATAATTTTCCAGGCAAAGAAGATAAGACTGTAGGGAGGGTGTACTCTAAGATAGTACA
GGTTCCAAAAAATACAGAAGCGTGAATCACACTGGGCTTCTATAACTGGTCTGGCATTATAATGTAGAGTATGAGACAGGAATGGTAAGCAATGATTCTG
GAGAGTCAGAAAGGGCCAACTGAAGGAAGATTTGTAAACCATGCTATAAATTGTACTGAAACCGGGAAAGGGTTATCACGCAGAAATTCAAGGAAAACAA
TACGTTATAAAATTAGTAGAATTTGCTAATGGGTTAACTACTGTGGTGAGGCAGGGGAAGAGGTCTAAGTTGAATTTTGGTTTCCTTTCTTAATCAATTA
GGGAATAAAGAAAGAGATGAGTTAGTGCCGTTGAGGCCAGGTAATACTGTGTTTAGTTTTTAACATGCTGGAGATGTTAATAAAGCATTTATGTCTATAA
ATATCTGAAGCTCAAGAGAGGAAATATCTGAAGATATCTGAAGCTAGGCTAGAGATTGCTAGAAACATAGATGTTGGTGTACATCCAGGTCAAGTGAGTC
AGGGAGAAGAAGCTCATATAAAAACTTCACAAAGAAAGGAGGCTACTCATTCCCAGGAAAATATTCCTTTTTCTTTGAGTTACATACCTTGTTCTCATCT
TCCCCCAAGTTTTATTATTCTTGTATTTCTCTCTGAAGCTTTCACTAAAGTATTACAATAAGCTAAAAATAACTATACTCCATAGACTCATGCTTGGACA
AAGTGAAACTTGGAGAGTATAATTAGAATTTTTCAGCCCTAATGAGCTATATCAGTTAATCTGGAACTAATAGACACAAGAAGTGAGAAATATTTGAACC
AATGGCATGCTAGAGCCAGCTGGCATCGCCTTTTCTTTTTAACAACTCTTATTTCGGTGACATTATATTAGTAGCTTGAAATTAACCATGACGGGAGTAT
TTATACTACAAAAATTGGCTACTTTGGTTTGAATGTTTTGCCCCTTCCAAAACTCATGAGTTGAAAGCTTAATTACCAATGCAACAGTATTGGGAAGCAG
CACTGAATAGAAGGTGTTTCTGTCATGAAGACTCTGGCCTCATTAATGGAATAATACTACAATGAAAGCGCTTTCAGCCTTCAGGAGTGGTTTCCTTCCC
TTCAACTTTTTTGGCATGTGAGGAATTGTGTCTCTACCCTCTGGAGAATGCAGCCATCAATATGCCATCTTGGAAGTAGAGACTGGTCCCTCACCAGACA
CTGAACCTACTGGCATTTTGATCTTAGACTTTCCAACCTCTAAAATTTGTAAGAAATAAATTTCGTTTTTTTATAGATTACACAGTCTCAGGTACTTTTT
TACAGCAAAACAAAACAGACTAAGAAATTGGCAAACCCTATAAATAAATATTGATCATTTTTTCCTAAGGAGTTGATTGATAAATATTTGCCAGCACACT
ACTGTCTCATCCATATAAATAGATACTCCTTTCTTAATGAATATCTTCAAAAGCAGTCATGGAAACAGCAAGAGAAACACTCGAAACAACTCTAGAAGGT
CCACAGGAACCATATTAGAAAATATAAAGAAGAACTATAGCAAGAATGAGAAGTGGGTTTCAGATTGGGTGAGGTTACAGATTCACCGTCTAAACAGATA
AATCTAACATCTTTATATCTGAGTGCTATTACCTGTCAAGAGGAAATAATGACTTAACACAAAAGAATACATATTAAAAGTTAAGTGATTATTTTAAGAA
GTTTGACATGCTATGCACGTGAGCTATTATTAGTAACTCAAGGATTTCAACATCAAAAAAGTATATTCAGACTTCGAAGGCATCACTAAATTTTGCCTTT
AGTACCATCATACTTCACTTGAATTCTCTAAACTCCGTGGCCTACAAGGAGTTATATGGCCTTCTGTGCATTGGAATCATAGTATAATCAATCCTTTTGT
TTCTCCACATGTATTAGGTATCTCTACACTGGGATTTGCTGTCTGTCTTGCTATTAAAAATAGGGAAGAGAATCATTGCTGATATTTCTGCTAGGGAAAG
CTAGAAATCTAGTTGTGATTGTTTTCAAACAGCCTGAGAGCATGGCACTGATAATTTTAGAATTAAATTATGTTTTACCATGTAAATTAGAAAGTGCTTT
TGTGATGAGTTTTTCTAATACAGTTCCTGAAGAGGAGTTGATGCTGCACAGTGAATTGAGGGCCAAATCAGCAATACAACCTGGGTCGCCTGGATTTCAG
CGCATGGCCTTTCCAAGATAACATGCTACTCTCTCGTCCACAGATTTTGAAGAAAAAAAAAGATCACCTAAAGAGAAAATAGAGAAAAACTAAAGCAAGA
CCACAGAAGAGCTGGATGTGGATAGAACATCTAGACCAGGAAGAACTCAGCCTGGAGGAGTATGGGAGAAACACAGCAACGGAAAACCTGGAACATGCAG
AGTACTCTTGTAAGTGCTAGTACCCATAAGCTCTCATGATTTTTAAAGAAAGGCAAACTCAACTTGAGGCCGCTTCTAGAAGAATAATCACTGTTTTCTG
GAACTTAGACTTTTTGATCCAGGTGCTCTTACATTAGAATGTAAAGGCAAAATCCTAACTGCAGACACATTTATCTCTTCACTTTCTCTAATATGTATTA
CAGCTGTTTCATGATGACAAATAAACCACACAATGAAACAGATTTATGCTGCCAAGAAATCACGATCACCAACATCAATTCCGTTTTCAACAAAGTCCCA
CAAACTCACTGTGATCTTTTGCTAATTCATTCTCTCTTTCTATCCAGTGCCTATTTTGACTTTTACCACTCCCCTTTACAGAGAAACCAGACACCATTTA
GATAGGAACCCCAACAATTTTCTGCAAATCCCATTTTCAAACCTAGATTTTCCAATTATGTATGTATATATATACATCCATATATATCCATATATATACA
TCCATATATATCCATATATATATATCCATATATATACATCCATATATATCCA

Expression



Full and truncated open reading frames discovered in TCONS_00240688

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.