Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000217185 | protein tyrosine kinase 6 | protein coding | TCONS_00125813 | 540 | 298 | UTR3 | Trans | |
ENST00000263955 | serine/threonine kinase 17b | protein coding | TCONS_00125813 | 527 | 254 | UTR3 | Trans | |
ENST00000264893 | septin 11 | protein coding | TCONS_00125813 | 537 | 296 | UTR3 | Trans | |
ENST00000309060 | zinc fingers and homeoboxes 3 | protein coding | TCONS_00125813 | 590 | 298 | UTR3 | Trans | |
ENST00000336787 | RAB27A, member RAS oncogene family | protein coding | TCONS_00125813 | 659 | 313 | UTR3 | Trans | |
ENST00000378004 | Rho GTPase activating protein 26 | protein coding | TCONS_00125813 | 550 | 311 | UTR3 | Trans | |
ENST00000396307 | RAB27A, member RAS oncogene family | protein coding | TCONS_00125813 | 659 | 313 | UTR3 | Trans | |
ENST00000421422 | zinc fingers and homeoboxes 3 | protein coding | TCONS_00125813 | 590 | 298 | UTR3 | Trans | |
ENST00000424496 | sense_intronic | sense intronic | TCONS_00125813 | 538 | 308 | noncoding | Trans | |
ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | TCONS_00125813 | 606 | 261 | CDS_UTR | Trans | |
ENST00000547865 | spermatogenesis associated, serine-rich 2 | protein coding | TCONS_00125813 | 640 | 314 | UTR3 | Trans | |
ENST00000549365 | DNA-damage regulated autophagy modulator 1 | nonsense mediated decay | TCONS_00125813 | 504 | 281 | CDS_UTR | Trans | |
ENST00000568559 | transmembrane protein 170A | nonsense mediated decay | TCONS_00125813 | 536 | 278 | UTR3 | Trans | |
ENST00000588483 | tropomyosin 4 | protein coding | TCONS_00125813 | 573 | 276 | UTR5 | Trans | |
ENST00000607772 | CNKSR family member 3 | protein coding | TCONS_00125813 | 658 | 310 | UTR3 | Trans | |
ENST00000608958 | SET domain containing (lysine methyltransferase) 7 | protein coding | TCONS_00125813 | 558 | 295 | UTR3 | Trans | |
ENST00000620139 | melanoregulin | protein coding | TCONS_00125813 | 515 | 258 | UTR3 | Trans | |
TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | TCONS_00125813 | 610 | 309 | UTR3 | Trans | |
TCONS_00030588 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | TCONS_00125813 | 543 | 314 | UTR3 | Trans | |
TCONS_00053851 | transmembrane protein 263 | novel protein coding | TCONS_00125813 | 645 | 280 | UTR3 | Trans | |
TCONS_00075813 | forkhead box N3 | novel protein coding | TCONS_00125813 | 610 | 278 | UTR5 | Trans | |
TCONS_00075827 | forkhead box N3 | novel protein coding | TCONS_00125813 | 610 | 278 | UTR3 | Trans | |
TCONS_00083866 | RAB27A, member RAS oncogene family | novel protein coding | TCONS_00125813 | 659 | 313 | UTR3 | Trans | |
TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | TCONS_00125813 | 548 | 261 | UTR3 | Trans | |
TCONS_00116668 | desmoglein 3 | novel protein coding | TCONS_00125813 | 531 | 317 | UTR3 | Trans | |
TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | TCONS_00125813 | 542 | 277 | UTR3 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | TCONS_00125813 | 634 | 279 | UTR3 | Trans | |
TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00125813 | 621 | 247 | UTR3 | Trans | |
TCONS_00147113 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00125813 | 621 | 247 | UTR3 | Trans | |
TCONS_00147115 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00125813 | 621 | 247 | UTR3 | Trans | |
TCONS_00153158 | serine/threonine kinase 17b | novel protein coding | TCONS_00125813 | 527 | 254 | UTR3 | Trans | |
TCONS_00194682 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00125813 | 606 | 261 | UTR3 | Trans | |
TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00125813 | 606 | 261 | UTR3 | Trans | |
TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | TCONS_00125813 | 531 | 283 | UTR3 | Trans | |
TCONS_00213181 | tubby like protein 4 | novel protein coding | TCONS_00125813 | 595 | 317 | UTR3 | Trans | |
TCONS_00213191 | tubby like protein 4 | novel protein coding | TCONS_00125813 | 595 | 317 | UTR3 | Trans | |
TCONS_00213738 | enoyl-CoA delta isomerase 2 | novel protein coding | TCONS_00125813 | 520 | 297 | UTR3 | Trans | |
TCONS_00214410 | processed_pseudogene | novel protein coding | TCONS_00125813 | 629 | 285 | UTR5 | Trans | |
TCONS_00226448 | collagen, type XXVIII, alpha 1 | novel protein coding | TCONS_00125813 | 535 | 278 | UTR5 | Trans | |
TCONS_00226450 | collagen, type XXVIII, alpha 1 | novel protein coding | TCONS_00125813 | 535 | 278 | UTR5 | Trans | |
TCONS_00226462 | lincRNA | novel noncoding | TCONS_00125813 | 535 | 278 | noncoding | Trans | |
TCONS_00226463 | lincRNA | novel noncoding | TCONS_00125813 | 535 | 278 | noncoding | Trans | |
TCONS_00226468 | lincRNA | novel noncoding | TCONS_00125813 | 535 | 278 | noncoding | Trans | |
TCONS_00235281 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 | novel protein coding | TCONS_00125813 | 607 | 313 | UTR5 | Trans | |
TCONS_00240685 | metastasis suppressor 1 | novel protein coding | TCONS_00125813 | 539 | 233 | UTR3 | Trans | |
TCONS_00240688 | metastasis suppressor 1 | novel protein coding | TCONS_00125813 | 557 | 302 | UTR3 | Trans | |
TCONS_00249092 | transmembrane protein 245 | novel protein coding | TCONS_00125813 | 601 | 278 | UTR5 | Trans | |
TCONS_00253752 | queuine tRNA-ribosyltransferase 1 pseudogene 1 | novel protein coding | TCONS_00125813 | 549 | 289 | UTR3 | Trans |
>TCONS_00253752 (7737 nt)
CTCCGGGGCACAGGCCTTTTAGGGGCGGGGCGAGCTTGCCTGCCAGAAGCTCCTCTCCCAGCCTGCGAGCATTTCCAGGCTCTTGTTTCCCATCAGCCTC
TGGGTCCAAACTAACCACAGGTCTCTGGGTCCTTTTCCGGTGTCCTTAAGGTTCTTGGACTCTGCATGGTTCCCTTTAGCCTGTCTTCGGGCCTGCCACA
ATTAAATGACCGCAAGAAAGAAGTCTATGCTAAGCCCCATAATGAACGTTTCAAGCAAGAAGGATGAGAATTTTAGATCTGGAAGTGTCCGCGGGACAGG
ATCTTGTCAAGACCTGATGGGGAAGTTCTAGAGTGCTGCCAGGTTGCCAGATTTCTAAGAAGGAGTTTGAAGAGGAGAAAAGGATTTTTGCATGTTTAGA
AATCAAGGTTCAGGAGAATCTTGACAGTGAATGTGTCTCATTACATTGAATAACAGCTACAGGATGTTCGAGAGCTGTTCTGGCTTTTCTGGATTCTGTG
CTTCACCAATAGAGGAATCCCATGGAGCATTAATTAGTTCTTGCAATTCCAGAACCATGACTGATGGGTTGGTGACATTCAGGGATGTGGCCATCGACTT
CTCTCAGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGACTTGTACGTGGATGTAATGTTGGAGAACTATAGTAACTTGGTGTCACTGGGTAAGGTC
ATCTGCCTGAAATAATTTAGAGTCTCCTCTTTGCATCATCAGTTTTCTGCACTGGAAATTACAGGGCTATCTTTGAAGAAACCAGGTGAATTTCTTCTCC
CCCTTCCCAAGGGCATGCTTTTATACTTGCTGGGTTAGAAATGGGTTTGTTAAACACGTTGATCTTCCCCATCCCTCAGTGAGCTTTACACCATTCTCGG
GCCCTCCCTGCAATCACCTCTCTCCTTTAATGGCCAAGGGGCTGGATTTGCATTATAGAACATTTATTTCATAACTATGGCAAAGAAACCAGATTTCATA
AATTCTGCAAATATTATATTGAATATCTACTCCTGGCCAGCCTTGTGCTGAGCACTGTCAATTGAATCATGAACAAGCTTTGATAACTTGCCCATTTTCG
TGCAGTTTACTTTGTAGTAAAGCAGAAACATCAAATAAGTAAATTTATAAATAGATAAATAGTATGTAATGAAGCAAATTCTTTGGAAAAGGTAAACAGC
ATAAGGGAATAGAAAATGATGAGGACTGACAGGGCTAATTTAGGTAAGACAGTCGGGGAACGCTTTCTTGAACAGAGATGTGGAGCCTGGGATCTCTATG
TGAATATCTGGCGGAGGAACAGATCAGTCACAGTGAACAGCAAATGCAAAGACCCTGTTGTTGGAAAGGAACTTTACCAGAACTCTAGAGTAGAGTTATT
AAAGGAACATGTACTAAGAAATTAGGCCAGGGAGATAGGAAGGGGCCAGATAATACATTGTTTTGTTGTTCTTGTTTGTGGAATTTGGATTGTTTAGTCT
CTTTCAGTCTGAAACAGTTCACATGTCTTTCCTTGACTTGCGTATATGTCTGTGATGCTTTTGAAGATTACAGGCCAGCTATTTTGTATAGTGTTCCTGA
ATGTGGGTTTGTCTGCTATTTCTTCATGATTAGATTTAGAATATGGATCTTTGGCAGGATTATCACAGAATTGATGCTGCGTTCTTCTCCCTGCATTTTG
TTGGGTGGTATGATTAATTTATCATTACTCATGTTATTCACTCTGAGTACTTGATTAAGGTAGCGTCTGCTGGCTTCCTCCTTGTGCAGTTGCCCTTTTT
CCCTTCCACAACTATTTTGTGGGGAGGAACTTTGAAACTATTAAATATTGTGGAACTGGGCACAGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGA
AGCTGAGACGGTTGGATCACTTGAGGCCAGGAGTTCGAGACCAGCATGGGCAGCATGGCAAAACCCCATCTCTACAAAAAATACAAAAATATTTGCTGGG
CTGTGGTGGTGCGCTCCTTTAGTCCCAGCAACTGGGGAGGCTGAGGTGGCTGGATTGCTTGAACCTAAGAGGTTGAGGCTGCAGTGAGCTGAGATTGTGT
CACCACACTCCAGCCTGGGTGACACACAAGACCCTACCTCAATAAATAAATAAATATTGTGTTCCTCTTTAAACTTTCCATTTATTCATATGTTCGCTTT
CTAGTCAATGGGCTATATTCTGTTTTTTTTCTGTTATTTATTTTGAAGCTCAAAGTGTTGGAGCTTGTCCAGATTTAGTCAGTGGGAATCCTTTCATGAT
ATGGCTTTTTGGCACATCTCCGTCACTCTTTGAGTACCTCCTGGTTTTCTGATAAACAAGGTGTTAGAGGTTCATCTTGTATGAAATTTCCCTTGTCTAG
TTTTACAATCAGCTATTGCTTTGAAGTGCCTGGTTACTTTCACACAGATTTATAGTTATTATTTTATGCATTTGTCTTTTAAATCAATAAATCAAAAGTA
CAATAATACTAACTTTTATATTTACTCATGTAGTTACCTTTACCAATGTTCTTTATTTCTCCTTATGGCTTCTAATTACTGTTTAGTGTCCTTTCACTTT
AGTCTGAAACACTCTTGTCTAACATTTCTTCTAGAGTAGGTCTACTGGTAATCACCTCCTTCAGCTTTTGTTTTTTCTGGAAATGCCTTAATTTCACCTT
TATTCTTAAAGGACAGTTTTTGCTGGTATAGAATTCTTGGTTGACAGTTTTTTTTTTCTTTTGGACTTTTCAATATACCATCCTGTTACTTTCTGTTCTC
TGTGGTTTCTGATGAGAAATTAGCTGTTAATCTTGTTGCAGATTCTTGTATGTGGTAGGCTGCTGCTTTCTTCCTGTGTTCTGAAGTCTTTTTGTCTTTG
GGTTTCCATAATTTGACAATAATGTGTCTAGATATGAATCTCTTTATCATGTCTGAAGTTGTTGAGCCTCTTGGATGTGTGTATTCCTGCCTTTTGTCAG
ATTTTGGAAGTTTTCAGACATTTTTTCTTCAAATTTTTTTCTCTACTTTTGTCTCTCTTCTTTTTCTGGGACTCATATGATGTGTATGTTGGTGTGCTTG
ATGGTATCCCATTGATCCCTCAGGCTCTCTTCACTGTTCATTATTCCTTTTTCTTTTTGCTTCTCTAGTGCAATAATTTCAAATGACTCATTTTCAAGTT
TGCTGAGTCTTTCTTCTGCTGAATCCACTATTGAAATTTTCATTTCAGTTACTTTACTCCAGAATTTGTTTGGTTCCTTTTTTTTATAATTTCTATCCTT
TTATTGATATTTTCATTTTGTTCATACATTCTTTTCCTGATTTCCTTTAGCTCTTGGTCCATGGTTTCTGTAGCTCATTGAGCATATTTGGATAGTTCAT
TTAATGTCTGGGCTTCCTCAGGAATGGTTTCTGTCAGATTCTTTTTTTTCCTTTGAACGGGCCCCATATTTTCCTGTTTCACTGTATGCTTTGTAATTTT
TTTTGTTAAAACTGGGCATTTTGAGTATTATAATGTGGTACCTCTGGAGATTCAATTTTCCCATTCCTCAGGCATAGCTGATTTCTGCTTGTTGAGGGCT
GGAGCTGTCAGATTTTTTCAAACTCTTTTTGCAAATTGTATATTCCTTATTGTATGTGGTCACTGAAATTTCTGTTCCATCATCTCTACAGTCAGTTAGT
ACCAGACAAAGATTTACTTAAATATCTGGCTGTAAAAAGGGGAGGAAAAAAAGGTCCATTAGCCCTTTAAATCTTCCAATAGATACTTCTGGGGAAAGCT
GCTGTGGCTGATGGGGCTAAAATCAAGGCAGTTATCTGTGCTGGTCCCTCAAGGTAACACAAAACCCACCAAACTGCACAACCCTGAATTTTTTGGAAGA
CAAGGTCACGCTGCCCACCCAGGTCCCAACCGGCTGTTCCAGGAATACAGGCTGCTCTCCCCACAGCTGTGGTGGAGCTGAGGAGTGAAGGAAGTGATTA
GTTGGTACACAGCATTCCAGGCACATAGGCCTGTCATCCCATAGCATTGGCTGGACTGAGAAATGGGGGATGGTGGCTTGCACGAGCCACTCTTTCACCT
AAGAATAGTAGCCTCTTTATTCATCCAGCACTCCCCTTGTTGTTATGGAAGTGCCTGATAAGATTCCAGAATTAAGAGTTTGTGGATGCCAATCTCTCTC
TCTCTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACA
CCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTTTCTCCTTTTTTTTTTTTATTTTTTAGTA
GAGATGAGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAATGCTAGGATTACAGGTGTGGCC
CACCGCACCTGGCCAATGACAATCTGTCTTTCCAGCTCAATTGTTGCTTTGATGGAGGTACCAGCCCTTAGAGCTTCCTATTTCATCATTTTGTGTGACA
TCACTCCTACATATTCATTTAATGTCACTATTGATATGGTTAGATTTCAGTTTACTATCTTGCTATTTTTTGTTTCACTAGTTCTTTCTTTTGTTTCCAC
CTTCTTGGATTCATCAAGTATTTTTTAGTATTCCATTTTATCTCATCTGTTATCTTTTGCTGTATTATTTGTATTTACTTTTGGGATTACAATATGCATC
CTTAATTTAGCATGGTCTACTTGAAATTAATAACATACTACTTTGTTGTATAATGTAAGAATTTTACTAATCTGTAAACTTCATTCAGCCTGAAAAGCTT
CCTTTAGCATTTCTTGTGTTATATGGCTACTAGCAGCTAATTTTATCTTTTTTTTTTTTTTTTTTGAGACAGTCTCACTGTGTCACCCAGGCTGGAGTGC
AGTGCCATGATTTCAGCTCACCGCAGCCTCTGCCTCCCAGGTTCAAGCAATTCTCGTGCCTCAGCCTCCAAAATAGCTGGGATTACAGTCGTGTGCCACT
ATGCCTGACTAGTTTTTGTATTTTTAGTAGACACAAGGTTTCACTGTGTTGGCCAGGCTGGTTTTGATTTCCTGACCTCAGGTGATCCACCTGCCTTGGC
CTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCCTTCATCTTTCTTATTTTTGAAGGATATTTTTACCAGATATGAATTTCCCAACTGA
TATATTTTTTCTTTTAGTTAGCTTCAAAAATGTTCCATTATCTTCTGAACTCTATTGTATATAATGATTAGACAGCTATGATTCTTATTGTTCATTTTAT
ATATACTTTATTCTCTGTTATTAAGTTTTTTCTTTATTTTTGGTCTGTAATAATCTGACTATAAAGTTCTAGATATGGTTCCTTTACATTTATCATGCTT
CACTTTCCCTTACCTTTGATCAGTGGGTTGATTTTTTTATTGAATTTGGAGAAATTTCAACCATTGTATCTTCAAATACTTTTTTCTGCTTCTTTAGTAC
TTTTCCTCCTCCTAAGACTCCAATTATATGTGTGTTAGACCACTTATATGGTGCCACCAGTCACGGAGGTGCAACCCCCAGTCTTTTTACTCTTTGTACT
TCAGTTTGGTAATACCTATTTACCTGTCTTGAAGTCACTGTTTTTTTTTTCTTTGATAGTGTCCAATTATTGTTAAGCCTATCCAATAAAGATTTCATTC
CACCTACATTTTATAGTTATAGAATTTACATTTGGTTTTGTGGGTCTGCTTTTATTGACTGTATTTTCTCTAAATCTTGTGTCAAATTTTCCTGCTTCTT
TACCGGTCTTACAATTTCTCATTGTATACTGGCCATTGTAGATGCCATGTTGTAGTGACTTGGGGATTTTATTATCTTCCTAATAGTTAAACTGTTCAGG
CAAGCAGTTAAATTAATAGCAGATCACAATGATCTTTTTAAGAGTTGATTTTTGAAGGCAGGTACAGTTTGGTTTTATCCTTAGTCCTGGACATAATTCT
TACTCTAGGTAGGGCAGTGGTTCTCAAACTGTGGACTGAAGACCCCTGGGAGTTCCCAAGAACCTTTCAGTGGGCCAAACCTTTCACAAAGTGAAAAATA
TTCTCATAACAATACTGAGAGGTTTGCCTTTTTCACTGTGGTGACACTTCCACTGGTGGTGTAGAAGCCATGGTGAATCTTCTCTGCTTTAGCATGAGCA
AAGGCAGAGGCACCAAATAGTACTAGTAATCATCATATTCTTTACCTCCACACACAAAGAAAATGTGTTAAGAAAAAACCCATTTTCACTTAAGAACATC
TTGAAGAAGCAGTATTCATTTTATTAAATCTCAACCCTTGATTATATATACATTTAAAAAATATTCTATGTAATGAAATGGGAAGTATCCATTAAGGTCT
TCTGCTGTATACCAAAGTATGATGGTTGCCTTGAAGAAAACCACTTGTACAGTTGTTTAAGTTGTGAGTTAAAGGCCAGGCTCTGTGGCTGATGCCCGTA
ATCCCAGCATTTTGGGAGGCCAAGGCGGACAGATCACAAGGTTAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACA
AAAATTAGCTGAGCATGGTGGCACGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGAGAGGCGGAGGTTGCAGTGAG
CCAAGATCGTGCCACTGCATTCCAGCCTGGTGACAAAGTGAGACTACGTCCCCACCCCCAAAAAAATTGTGAGTTAAACCAACTGCTTTTTTGACAAAAC
ACCATATTTTTCACCAAAGAATGAAAAACTTTGTTTGTTCAGACTTGGGCAGTAGGAAAACATTTTCTTGCAAGTGAGCCTGTCACTTCAAAAATAACTA
ATATTTGTTGCCAATGATATAATTCAATCTGTCATGTTAAAATTAGAATTTTGTAAAATGTTTATTCATAATTTTGAGCTTTATAGCTTCCTAATACATT
AAGATTTTTTATGAGATGGGTGGTAATATTAACATGTGATTTTTTGATGTTGTATAGTGAACTACGTCAACATTTCAAAGATCTGCATAACTCTTTGAAT
CAGTATTTTCCAAATGACCAGTGTATGATGTTACAAAATTACACATGGATAAAAGATTATTCAAAGTGCAATGTAACATAGTATGAAAAGTTCACAGATA
TGATTTTATATTCCACATTGTACTTAACCTGCCAGACACTACCATTTCTTAAGTTTTAGGGTGGTGTCAAAGAAAAATATCCACAGTTATCTGCATGGAC
TAGTAAAATATTCTGCCATTTTCCAACTATGTACCATGAGAGGCTAGATTTTCTTCATATACTTCATATATATGATTTTCTTCATATATTTCAACCTAAA
TAACATATTGCCATAGATTGAATGCAGAAGCAGATATGAGAATCCAGGTGTCTTTTATTAAACCATCCATTTAAAAGATTTGAAAAAATTTAAAACATCT
TTTGTTTTGTTTTAGAAAAGATTATTTTTATAACAAATCATTTATGTTAACAGTTAATGGTTTATTGTTATTTTAAGTGAATTAGTAAATATCTTAAAAT
TTCTCTGTTTAAATTTTTAACATGACAAATATCAAAAT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.