Detailed information on TCONS_00125815

lncRNA-RNA interactions

Number of interactions: 48

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000217185 protein tyrosine kinase 6 protein coding TCONS_00125815 540 298 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00125815 527 254 UTR3 Trans
ENST00000264893 septin 11 protein coding TCONS_00125815 537 296 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding TCONS_00125815 590 298 UTR3 Trans
ENST00000336787 RAB27A, member RAS oncogene family protein coding TCONS_00125815 659 313 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding TCONS_00125815 550 311 UTR3 Trans
ENST00000396307 RAB27A, member RAS oncogene family protein coding TCONS_00125815 659 313 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding TCONS_00125815 590 298 UTR3 Trans
ENST00000424496 sense_intronic sense intronic TCONS_00125815 538 308 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00125815 606 261 CDS_UTR Trans
ENST00000547865 spermatogenesis associated, serine-rich 2 protein coding TCONS_00125815 640 314 UTR3 Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00125815 504 281 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00125815 536 278 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding TCONS_00125815 573 276 UTR5 Trans
ENST00000607772 CNKSR family member 3 protein coding TCONS_00125815 658 310 UTR3 Trans
ENST00000608958 SET domain containing (lysine methyltransferase) 7 protein coding TCONS_00125815 558 295 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00125815 515 258 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00125815 610 309 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00125815 543 314 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding TCONS_00125815 645 280 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding TCONS_00125815 610 278 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding TCONS_00125815 610 278 UTR3 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding TCONS_00125815 659 313 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00125815 548 261 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00125815 531 317 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding TCONS_00125815 542 277 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00125815 634 279 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00125815 621 247 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding TCONS_00125815 621 247 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding TCONS_00125815 621 247 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00125815 527 254 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00125815 606 261 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00125815 606 261 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00125815 531 283 UTR3 Trans
TCONS_00213181 tubby like protein 4 novel protein coding TCONS_00125815 595 317 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00125815 595 317 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding TCONS_00125815 520 297 UTR3 Trans
TCONS_00214410 processed_pseudogene novel protein coding TCONS_00125815 629 285 UTR5 Trans
TCONS_00226448 collagen, type XXVIII, alpha 1 novel protein coding TCONS_00125815 535 278 UTR5 Trans
TCONS_00226450 collagen, type XXVIII, alpha 1 novel protein coding TCONS_00125815 535 278 UTR5 Trans
TCONS_00226462 lincRNA novel noncoding TCONS_00125815 535 278 noncoding Trans
TCONS_00226463 lincRNA novel noncoding TCONS_00125815 535 278 noncoding Trans
TCONS_00226468 lincRNA novel noncoding TCONS_00125815 535 278 noncoding Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding TCONS_00125815 607 313 UTR5 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding TCONS_00125815 539 233 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00125815 557 302 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding TCONS_00125815 601 278 UTR5 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding TCONS_00125815 549 289 UTR3 Trans

Sequence

>TCONS_00253752 (7557 nt)
CTTTTAGGGGCGGGGCGAGCTTGCCTGCCAGAAGCTCCTCTCCCAGCCTGCGAGCATTTCCAGGCTCTTGTTTCCCATCAGCCTCTGGGTCCAAACTAAC
CACAGGTCTCTGGGTCCTTTTCCGGTGTCCTTAAGGTTCTTGGACTCTGCATGTGCTGCCAGGTTGCCAGATTTCTAAGAAGGAGTTTGAAGAGGAGAAA
AGGATTTTTGCATGTTTAGAAATCAAGGTTCAGGAGAATCTTGACAGTGAATGTGTCTCATTACATTGAATAACAGCTACAGGATGTTCGAGAGCTGTTC
TGGCTTTTCTGGATTCTGTGCTTCACCAATAGAGGAATCCCATGGAGCATTAATTAGTTCTTGCAATTCCAGAACCATGACTGATGGGTTGGTGACATTC
AGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGACTTGTACGTGGATGTAATGTTGGAGAACTATAGTAACT
TGGTGTCACTGGGTAAGGTCATCTGCCTGAAATAATTTAGAGTCTCCTCTTTGCATCATCAGTTTTCTGCACTGGAAATTACAGGGCTATCTTTGAAGAA
ACCAGGTGAATTTCTTCTCCCCCTTCCCAAGGGCATGCTTTTATACTTGCTGGGTTAGAAATGGGTTTGTTAAACACGTTGATCTTCCCCATCCCTCAGT
GAGCTTTACACCATTCTCGGGCCCTCCCTGCAATCACCTCTCTCCTTTAATGGCCAAGGGGCTGGATTTGCATTATAGAACATTTATTTCATAACTATGG
CAAAGAAACCAGATTTCATAAATTCTGCAAATATTATATTGAATATCTACTCCTGGCCAGCCTTGTGCTGAGCACTGTCAATTGAATCATGAACAAGCTT
TGATAACTTGCCCATTTTCGTGCAGTTTACTTTGTAGTAAAGCAGAAACATCAAATAAGTAAATTTATAAATAGATAAATAGTATGTAATGAAGCAAATT
CTTTGGAAAAGGTAAACAGCATAAGGGAATAGAAAATGATGAGGACTGACAGGGCTAATTTAGGTAAGACAGTCGGGGAACGCTTTCTTGAACAGAGATG
TGGAGCCTGGGATCTCTATGTGAATATCTGGCGGAGGAACAGATCAGTCACAGTGAACAGCAAATGCAAAGACCCTGTTGTTGGAAAGGAACTTTACCAG
AACTCTAGAGTAGAGTTATTAAAGGAACATGTACTAAGAAATTAGGCCAGGGAGATAGGAAGGGGCCAGATAATACATTGTTTTGTTGTTCTTGTTTGTG
GAATTTGGATTGTTTAGTCTCTTTCAGTCTGAAACAGTTCACATGTCTTTCCTTGACTTGCGTATATGTCTGTGATGCTTTTGAAGATTACAGGCCAGCT
ATTTTGTATAGTGTTCCTGAATGTGGGTTTGTCTGCTATTTCTTCATGATTAGATTTAGAATATGGATCTTTGGCAGGATTATCACAGAATTGATGCTGC
GTTCTTCTCCCTGCATTTTGTTGGGTGGTATGATTAATTTATCATTACTCATGTTATTCACTCTGAGTACTTGATTAAGGTAGCGTCTGCTGGCTTCCTC
CTTGTGCAGTTGCCCTTTTTCCCTTCCACAACTATTTTGTGGGGAGGAACTTTGAAACTATTAAATATTGTGGAACTGGGCACAGTGGTGGCTCACACCT
GTAATCCCAGCACTTTGGGAAGCTGAGACGGTTGGATCACTTGAGGCCAGGAGTTCGAGACCAGCATGGGCAGCATGGCAAAACCCCATCTCTACAAAAA
ATACAAAAATATTTGCTGGGCTGTGGTGGTGCGCTCCTTTAGTCCCAGCAACTGGGGAGGCTGAGGTGGCTGGATTGCTTGAACCTAAGAGGTTGAGGCT
GCAGTGAGCTGAGATTGTGTCACCACACTCCAGCCTGGGTGACACACAAGACCCTACCTCAATAAATAAATAAATATTGTGTTCCTCTTTAAACTTTCCA
TTTATTCATATGTTCGCTTTCTAGTCAATGGGCTATATTCTGTTTTTTTTCTGTTATTTATTTTGAAGCTCAAAGTGTTGGAGCTTGTCCAGATTTAGTC
AGTGGGAATCCTTTCATGATATGGCTTTTTGGCACATCTCCGTCACTCTTTGAGTACCTCCTGGTTTTCTGATAAACAAGGTGTTAGAGGTTCATCTTGT
ATGAAATTTCCCTTGTCTAGTTTTACAATCAGCTATTGCTTTGAAGTGCCTGGTTACTTTCACACAGATTTATAGTTATTATTTTATGCATTTGTCTTTT
AAATCAATAAATCAAAAGTACAATAATACTAACTTTTATATTTACTCATGTAGTTACCTTTACCAATGTTCTTTATTTCTCCTTATGGCTTCTAATTACT
GTTTAGTGTCCTTTCACTTTAGTCTGAAACACTCTTGTCTAACATTTCTTCTAGAGTAGGTCTACTGGTAATCACCTCCTTCAGCTTTTGTTTTTTCTGG
AAATGCCTTAATTTCACCTTTATTCTTAAAGGACAGTTTTTGCTGGTATAGAATTCTTGGTTGACAGTTTTTTTTTTCTTTTGGACTTTTCAATATACCA
TCCTGTTACTTTCTGTTCTCTGTGGTTTCTGATGAGAAATTAGCTGTTAATCTTGTTGCAGATTCTTGTATGTGGTAGGCTGCTGCTTTCTTCCTGTGTT
CTGAAGTCTTTTTGTCTTTGGGTTTCCATAATTTGACAATAATGTGTCTAGATATGAATCTCTTTATCATGTCTGAAGTTGTTGAGCCTCTTGGATGTGT
GTATTCCTGCCTTTTGTCAGATTTTGGAAGTTTTCAGACATTTTTTCTTCAAATTTTTTTCTCTACTTTTGTCTCTCTTCTTTTTCTGGGACTCATATGA
TGTGTATGTTGGTGTGCTTGATGGTATCCCATTGATCCCTCAGGCTCTCTTCACTGTTCATTATTCCTTTTTCTTTTTGCTTCTCTAGTGCAATAATTTC
AAATGACTCATTTTCAAGTTTGCTGAGTCTTTCTTCTGCTGAATCCACTATTGAAATTTTCATTTCAGTTACTTTACTCCAGAATTTGTTTGGTTCCTTT
TTTTTATAATTTCTATCCTTTTATTGATATTTTCATTTTGTTCATACATTCTTTTCCTGATTTCCTTTAGCTCTTGGTCCATGGTTTCTGTAGCTCATTG
AGCATATTTGGATAGTTCATTTAATGTCTGGGCTTCCTCAGGAATGGTTTCTGTCAGATTCTTTTTTTTCCTTTGAACGGGCCCCATATTTTCCTGTTTC
ACTGTATGCTTTGTAATTTTTTTTGTTAAAACTGGGCATTTTGAGTATTATAATGTGGTACCTCTGGAGATTCAATTTTCCCATTCCTCAGGCATAGCTG
ATTTCTGCTTGTTGAGGGCTGGAGCTGTCAGATTTTTTCAAACTCTTTTTGCAAATTGTATATTCCTTATTGTATGTGGTCACTGAAATTTCTGTTCCAT
CATCTCTACAGTCAGTTAGTACCAGACAAAGATTTACTTAAATATCTGGCTGTAAAAAGGGGAGGAAAAAAAGGTCCATTAGCCCTTTAAATCTTCCAAT
AGATACTTCTGGGGAAAGCTGCTGTGGCTGATGGGGCTAAAATCAAGGCAGTTATCTGTGCTGGTCCCTCAAGGTAACACAAAACCCACCAAACTGCACA
ACCCTGAATTTTTTGGAAGACAAGGTCACGCTGCCCACCCAGGTCCCAACCGGCTGTTCCAGGAATACAGGCTGCTCTCCCCACAGCTGTGGTGGAGCTG
AGGAGTGAAGGAAGTGATTAGTTGGTACACAGCATTCCAGGCACATAGGCCTGTCATCCCATAGCATTGGCTGGACTGAGAAATGGGGGATGGTGGCTTG
CACGAGCCACTCTTTCACCTAAGAATAGTAGCCTCTTTATTCATCCAGCACTCCCCTTGTTGTTATGGAAGTGCCTGATAAGATTCCAGAATTAAGAGTT
TGTGGATGCCAATCTCTCTCTCTCTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAAG
CTCTGCCTCCCAGGTTCACACCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTTTCTCCTTT
TTTTTTTTTATTTTTTAGTAGAGATGAGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAATG
CTAGGATTACAGGTGTGGCCCACCGCACCTGGCCAATGACAATCTGTCTTTCCAGCTCAATTGTTGCTTTGATGGAGGTACCAGCCCTTAGAGCTTCCTA
TTTCATCATTTTGTGTGACATCACTCCTACATATTCATTTAATGTCACTATTGATATGGTTAGATTTCAGTTTACTATCTTGCTATTTTTTGTTTCACTA
GTTCTTTCTTTTGTTTCCACCTTCTTGGATTCATCAAGTATTTTTTAGTATTCCATTTTATCTCATCTGTTATCTTTTGCTGTATTATTTGTATTTACTT
TTGGGATTACAATATGCATCCTTAATTTAGCATGGTCTACTTGAAATTAATAACATACTACTTTGTTGTATAATGTAAGAATTTTACTAATCTGTAAACT
TCATTCAGCCTGAAAAGCTTCCTTTAGCATTTCTTGTGTTATATGGCTACTAGCAGCTAATTTTATCTTTTTTTTTTTTTTTTTTGAGACAGTCTCACTG
TGTCACCCAGGCTGGAGTGCAGTGCCATGATTTCAGCTCACCGCAGCCTCTGCCTCCCAGGTTCAAGCAATTCTCGTGCCTCAGCCTCCAAAATAGCTGG
GATTACAGTCGTGTGCCACTATGCCTGACTAGTTTTTGTATTTTTAGTAGACACAAGGTTTCACTGTGTTGGCCAGGCTGGTTTTGATTTCCTGACCTCA
GGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCCTTCATCTTTCTTATTTTTGAAGGATATTTTTACCA
GATATGAATTTCCCAACTGATATATTTTTTCTTTTAGTTAGCTTCAAAAATGTTCCATTATCTTCTGAACTCTATTGTATATAATGATTAGACAGCTATG
ATTCTTATTGTTCATTTTATATATACTTTATTCTCTGTTATTAAGTTTTTTCTTTATTTTTGGTCTGTAATAATCTGACTATAAAGTTCTAGATATGGTT
CCTTTACATTTATCATGCTTCACTTTCCCTTACCTTTGATCAGTGGGTTGATTTTTTTATTGAATTTGGAGAAATTTCAACCATTGTATCTTCAAATACT
TTTTTCTGCTTCTTTAGTACTTTTCCTCCTCCTAAGACTCCAATTATATGTGTGTTAGACCACTTATATGGTGCCACCAGTCACGGAGGTGCAACCCCCA
GTCTTTTTACTCTTTGTACTTCAGTTTGGTAATACCTATTTACCTGTCTTGAAGTCACTGTTTTTTTTTTCTTTGATAGTGTCCAATTATTGTTAAGCCT
ATCCAATAAAGATTTCATTCCACCTACATTTTATAGTTATAGAATTTACATTTGGTTTTGTGGGTCTGCTTTTATTGACTGTATTTTCTCTAAATCTTGT
GTCAAATTTTCCTGCTTCTTTACCGGTCTTACAATTTCTCATTGTATACTGGCCATTGTAGATGCCATGTTGTAGTGACTTGGGGATTTTATTATCTTCC
TAATAGTTAAACTGTTCAGGCAAGCAGTTAAATTAATAGCAGATCACAATGATCTTTTTAAGAGTTGATTTTTGAAGGCAGGTACAGTTTGGTTTTATCC
TTAGTCCTGGACATAATTCTTACTCTAGGTAGGGCAGTGGTTCTCAAACTGTGGACTGAAGACCCCTGGGAGTTCCCAAGAACCTTTCAGTGGGCCAAAC
CTTTCACAAAGTGAAAAATATTCTCATAACAATACTGAGAGGTTTGCCTTTTTCACTGTGGTGACACTTCCACTGGTGGTGTAGAAGCCATGGTGAATCT
TCTCTGCTTTAGCATGAGCAAAGGCAGAGGCACCAAATAGTACTAGTAATCATCATATTCTTTACCTCCACACACAAAGAAAATGTGTTAAGAAAAAACC
CATTTTCACTTAAGAACATCTTGAAGAAGCAGTATTCATTTTATTAAATCTCAACCCTTGATTATATATACATTTAAAAAATATTCTATGTAATGAAATG
GGAAGTATCCATTAAGGTCTTCTGCTGTATACCAAAGTATGATGGTTGCCTTGAAGAAAACCACTTGTACAGTTGTTTAAGTTGTGAGTTAAAGGCCAGG
CTCTGTGGCTGATGCCCGTAATCCCAGCATTTTGGGAGGCCAAGGCGGACAGATCACAAGGTTAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACC
CCATCTCTACTAAAAATACAAAAATTAGCTGAGCATGGTGGCACGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGA
GAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCATTCCAGCCTGGTGACAAAGTGAGACTACGTCCCCACCCCCAAAAAAATTGTGAGTTAAACC
AACTGCTTTTTTGACAAAACACCATATTTTTCACCAAAGAATGAAAAACTTTGTTTGTTCAGACTTGGGCAGTAGGAAAACATTTTCTTGCAAGTGAGCC
TGTCACTTCAAAAATAACTAATATTTGTTGCCAATGATATAATTCAATCTGTCATGTTAAAATTAGAATTTTGTAAAATGTTTATTCATAATTTTGAGCT
TTATAGCTTCCTAATACATTAAGATTTTTTATGAGATGGGTGGTAATATTAACATGTGATTTTTTGATGTTGTATAGTGAACTACGTCAACATTTCAAAG
ATCTGCATAACTCTTTGAATCAGTATTTTCCAAATGACCAGTGTATGATGTTACAAAATTACACATGGATAAAAGATTATTCAAAGTGCAATGTAACATA
GTATGAAAAGTTCACAGATATGATTTTATATTCCACATTGTACTTAACCTGCCAGACACTACCATTTCTTAAGTTTTAGGGTGGTGTCAAAGAAAAATAT
CCACAGTTATCTGCATGGACTAGTAAAATATTCTGCCATTTTCCAACTATGTACCATGAGAGGCTAGATTTTCTTCATATACTTCATATATATGATTTTC
TTCATATATTTCAACCTAAATAACATATTGCCATAGATTGAATGCAGAAGCAGATATGAGAATCCAGGTGTCTTTTATTAAACCATCCATTTAAAAGATT
TGAAAAAATTTAAAACATCTTTTGTTTTGTTTTAGAAAAGATTATTTTTATAACAAATCATTTATGTTAACAGTTAATGGTTTATTGTTATTTTAAGTGA
ATTAGTAAATATCTTAAAATTTCTCTGTTTAAATTTTTAACATGACAAATATCAAAAT

Expression



Full and truncated open reading frames discovered in TCONS_00253752

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.