Detailed information on TCONS_00129912

lncRNA-RNA interactions

Number of interactions: 80

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262031 RNA binding motif, single stranded interacting protein 2 protein coding TCONS_00129912 738 448 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00129912 550 309 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00129912 628 291 UTR3 Trans
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding TCONS_00129912 525 299 UTR3 Trans
ENST00000330676 TLC domain containing 2 protein coding TCONS_00129912 610 274 UTR3 Trans
ENST00000334197 zinc finger protein 347 protein coding TCONS_00129912 611 298 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding TCONS_00129912 651 295 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding TCONS_00129912 655 283 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding TCONS_00129912 525 299 UTR3 Trans
ENST00000407780 inducible T-cell co-stimulator ligand protein coding TCONS_00129912 600 282 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding TCONS_00129912 601 314 UTR3 Trans
ENST00000450928 antisense antisense TCONS_00129912 548 299 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00129912 566 292 CDS Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript TCONS_00129912 542 287 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00129912 541 299 CDS_UTR Trans
ENST00000517408 antisense antisense TCONS_00129912 512 298 noncoding Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding TCONS_00129912 527 298 CDS_UTR Trans
ENST00000560870 sense_intronic sense intronic TCONS_00129912 525 263 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00129912 822 468 UTR3 Trans
ENST00000579685 adenomatosis polyposis coli down-regulated 1 nonsense mediated decay TCONS_00129912 521 290 CDS Trans
ENST00000592474 phosphoribosyl pyrophosphate synthetase-associated protein 1 retained intron TCONS_00129912 606 286 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00129912 630 263 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00129912 620 294 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00129912 625 284 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00129912 625 284 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00129912 630 293 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00129912 611 287 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding TCONS_00129912 604 267 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding TCONS_00129912 616 284 UTR5 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding TCONS_00129912 616 284 UTR5 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding TCONS_00129912 632 283 UTR5 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding TCONS_00129912 653 284 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding TCONS_00129912 653 284 UTR5 Trans
TCONS_00051899 RNA binding motif, single stranded interacting protein 2 novel protein coding TCONS_00129912 738 448 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00129912 640 282 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding TCONS_00129912 640 282 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00129912 601 284 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00129912 640 282 UTR5 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding TCONS_00129912 658 282 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00129912 610 297 UTR3 Trans
TCONS_00104867 hepatic leukemia factor novel protein coding TCONS_00129912 625 280 UTR3 Trans
TCONS_00104871 hepatic leukemia factor novel protein coding TCONS_00129912 625 280 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00129912 822 468 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00129912 522 296 UTR5 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding TCONS_00129912 637 284 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00129912 653 294 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00129912 609 264 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00129912 611 298 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding TCONS_00129912 687 282 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding TCONS_00129912 604 300 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00129912 550 309 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00129912 628 291 UTR3 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding TCONS_00129912 607 417 UTR5 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding TCONS_00129912 612 260 UTR5 Trans
TCONS_00163891 inducible T-cell co-stimulator ligand novel protein coding TCONS_00129912 600 282 UTR3 Trans
TCONS_00175724 TSC22 domain family, member 2 novel protein coding TCONS_00129912 616 284 UTR3 Trans
TCONS_00182613 processed_transcript novel protein coding TCONS_00129912 659 283 UTR5 Trans
TCONS_00182614 processed_transcript novel protein coding TCONS_00129912 659 283 UTR5 Trans
TCONS_00187165 NEDD4 binding protein 2 novel protein coding TCONS_00129912 615 284 UTR3 Trans
TCONS_00189321 transcribed_unprocessed_pseudogene novel protein coding TCONS_00129912 610 294 UTR5 Trans
TCONS_00189329 transcribed_unprocessed_pseudogene novel protein coding TCONS_00129912 610 294 UTR5 Trans
TCONS_00189333 transcribed_unprocessed_pseudogene novel protein coding TCONS_00129912 610 294 UTR5 Trans
TCONS_00189336 transcribed_unprocessed_pseudogene novel protein coding TCONS_00129912 610 294 UTR5 Trans
TCONS_00189341 transcribed_unprocessed_pseudogene novel protein coding TCONS_00129912 610 294 UTR5 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding TCONS_00129912 572 299 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding TCONS_00129912 572 299 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding TCONS_00129912 572 299 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00129912 618 298 UTR5 Trans
TCONS_00199319 sorting nexin 24 novel noncoding TCONS_00129912 529 275 noncoding Trans
TCONS_00203947 ectodermal-neural cortex 1 (with BTB domain) novel protein coding TCONS_00129912 554 299 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00129912 673 282 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding TCONS_00129912 673 282 noncoding Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding TCONS_00129912 635 285 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00129912 635 285 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding TCONS_00129912 562 290 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding TCONS_00129912 562 290 UTR3 Trans
TCONS_00230811 kielin/chordin-like protein novel protein coding TCONS_00129912 613 285 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding TCONS_00129912 651 295 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding TCONS_00129912 593 287 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00129912 608 284 UTR5 Trans

Sequence

>TCONS_00252827 (4665 nt)
CCCACCTCAGCCTCCTGAGTAGCTGGAATGACAGGTGCACACCACCACGCTCAGCTAATTTTTATATTTTTTGGTAGAGACAGGGTTTTGCCATGTTGCC
CAGGCTGGTCTCAAACTCCTGATCTCAAGTGATCTGCCTACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCCACCCTTCCTAC
CCTATTTTGACACCAGCCACCACAGCTGGCATAAGACTGCTTGCAAATGTTTATAAAAGAGGGGGCCCCAATCTGGAAGCATCCAGCTAATGGCTTCTCT
TGAAGCCACATTTGCATAACAAGCACAGTGCATTTACCAAATTAGATGTTGCATTGGTCAGCATCAGCTAGTGGCTGTAACAAACATTCCCAAGATATCA
CCAGCTAAACACAGTCAACATGTTAATGTCATAGTCCAAGGTGGTTGAGAAGCAGAGATGCAAAGCTCCATAAATCAGTTGGGAGCCAAGTGCATCTTGT
AGCTCTGTCATCCCTCTGGGCTTTGGGGGATATCAGCTGACAGACAGGGGACACAACCTATAAGATTGTGCAGCAGGGTTTTATGCGCCAGGTCTGGATA
TTTCCCATAGCCCTTCTACCCCACATCCCATTGGCCAGTTCTCATCACATGACAACCCTAGCCGCAAGGGAACCTGGGAAATGTAGTCTACGTAGGTGCC
AGGAGAAAGGGGGACAGAACTTGGTGTGAAAGTTCCCCGTCTTTGCCTGCCACAGAAGTTTCACTGGGGTAGCTTTTCTTGGGTGGTGGGGGCAATGGTG
GGGGGAGCTACCATTAACCACTGCCCTGGACTCATTCCTAATTCCCCTGCCCCCTGAACTTCATCCACAGAAGGCTGAAGCTCTTCTTCAGCAAAATGGC
GACTTCCTGGTTCGCGCCTCTGGGTCCCGTGGGGGCAACCCCGTGATCTCCTGCCGCTGGCGGGGCTCAGCCCTCCATTTTGAGGTGTTCCGTGTGGCCC
TGCGTCCCCGGCCAGGCCGACCCACAGCCCTCTTTCAACTGGAGGATGAGCAATTCCCCAGCATACCGGCTCTGGTTCACAGTTATATGACAGGCAGGCG
CCCACTGTCCCAGGCCACAGGGGCTGTGGTCTCCAGGCCTGTGACTTGGCAGGGGCCTCTGCGACGCAGCTTTAGCGAGGACACCCTGATGGATGGCCCA
GCTCGGATAGAGCCTCTCAGGGCAAGGAAGTGGAGCAACAGTCAGCCTGCAGATTTGGCACATATGGGGCGGTCAAGAGAAGACCCCGCTGGGATGGGTA
AGTGTCTGCTAGAATGGCCTGTGGCTCAGGGATTGGCTCTGCCACTCACCACCTAAGAGATCTTGGTCAGGTGCAGGCACCTCTTCGAGCCTCAATTTCT
TGCTTTAGAAAATGATGACAATCACGATGACTTAAAACATGCAGGGACTTTGTGGGTGCTTAAAATGTGTGTTTACAAGGCTGAGCGCGGTGGCTCATGC
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCCGGTGGATCACTTGAGGTCAGGAATTCGAGACCAGCCTTGCCAACATGGTGAAACCCCATCTCCACTAA
AAACACAAAATTAGCCGAGCGTGGTGGCACGCACCTGTAATCCCAGCTACTCTGGAGGCTGCGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGC
AGTGAGCCGAGATGGCGCTACCGCACTCCAGACTGGGTGACAGAACAAAACTCCATCTCAAAAAAAAAAAAAAGTGTTTACAATTATTCCAAGGAGCTGT
ACCTGTTCTGACCACAGCTTACCTTGCTAACAACTTCTGCTACGTACCCTCCTCATGCTGGTCACACAGCCCTCCTTGCAGTTGTTCGAACCCTCAGGCT
TTTATTCCCGCCTCGGGGCCTTTGCATTTTACATTTCCACCAGTGACGGGAACATTCTCATTCCCCTAATTTTTTCCTGAGTGGCTCCTCTCCATCCAGG
GTAAGTTCCTCAAAGCAGTTGAGTCTGACGGTCTTACCTAAAGGAGGACTCACCTGAATGCCCCCTCATGCCCCTTTTTTCCCATCCTTCTCCCAACCCC
ATTCAACATGAGCCGTCCCTGCATCCCAGGCCCTGCACGGAGTGCTAGGATACATCAACAAACCAGAAAGAGACAAAGATCCCTGCCCGATGGGAGCCAA
CAGTCCACGAGAGGACAACAAACCATGAACCACAAAAATAAGGCAATTTTGTTTGCTTCAAGATGAAAATTAAAACACAGGAAGGGAAGGCCAGGCACAG
TGGCTCAGGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGCGGGCGGATCACCTAAAGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCG
TCTCTACTAAAACTACAAAAATTAGCCGGGCGTGGTGGTACACACCTGTAATCCCAGCTACTCGGGAGACTCGGGAGGCTGAGGCACGAGAATTGCTTGA
ACCCGGGAGGCAGAGGTTGCCGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGACAACAGAGTGAGACTCTGTCTCAAAAAACAAACAAACAAACAA
AAAACAGTAAGGGAAGGGTGAGGTGGCTCAGGTCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGC
CTGGCCAACATGGTGAAAACCCATCTCTACTAAAAAAAAATAAAATAAAATAAAATACAAAAATTAGCCAGGTGTAGTGGCATATGCCTGTAATCCAAGC
TACTTGGGACAGAGTGAGACTGTCTCAAAAAAACCGAAAAAACAAAAACAAAACAAAACAAAAAAAACAGAGTAAGGGAGATAGAGACTATAAAGATGGA
GATGTATATTGCAATTTTATTTTATTTCTATTTATTTATTTATTTTTGAGATAGAGTTTTGCTCTTGTTGCCCAGGATGGAGTGCAATGGCGTGATACCG
GCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCACCACGCCCTGCTAATTTT
GTATTTTTAGTGGAGATGGGGTTTCCCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCAACCTCCCAAAGTGCTGGGA
TTACAGGCGTGAGCCATTGTACCCAAGCAAGCAATTTTAAGTGGTAGTCAGGAAAGGCCCCATTGCAGAAAAAAATAAAATTGAAGGAAATGAGGGAGGG
AACAGGTGGATAACTGGGGGATAAGCAGGCAGGAGGAAGAGGCAGTGCAAAGGCTCTTGGGTCAGAACAAGAATTTAAGCTGTTCATTCAACCAAAAAAT
GAGTGGGTAGCTGGGTGTGGTGTTGCACGCCTGTGGTCCTAGCCACTTGGGAGGTTGAAGCAGGAGGACTCCTTGAACCCAGAAAGTCAAGGCTGCAGTG
AGCCGTGATCGCACCATTGCACTCCAGCCTGGGCCACAGAGTGAGACCCTGACTCAAATTTAAAAAAAAAAAAAAAAAGAAGAAGAAAAGAAAGGGCTGG
GTGCAATGGCTCAATTTCTTCTTAAAAAAAAAAAAAAAAAGATACACGTGCAGAATGTGCAGGTTGAGCCTATTCAAAGGCATGGTAAATACAGTCTCCC
AAAAGTCTTAGTACAGTTTTAAGTACTAATAGTCCAGAAATTACAAGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGCGGATCACGAGGTCAAGA
GATCAAGACCATCCTGGCCAACATGGTGAAACCCCGTGTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCCTGTGGTCCCAGCTACTCGGGAG
GCTGAAGCAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAATAAGCCGAGATGGCGCCACTGCACTGTAGCCTGGTGACAGAGTGAGACTCCGTCA
AGAAAGAAAAGAAAGGAAGGAAGGAAGGAACGAAGGGAGGGAGGGAAGGAGGGACACACGAGTGTAGCTGAAGCAGAGGGAATGAGGGGAGAGTCAGAGA
GAGAGACCCTGGGGCTCAGATTGTGAGGATTTTTCAGCTACTGTGAGCACTTTGGACCTTAACTCAGAGTGAGCCAGGCACTGTTGGATGATTTCAAGTT
CCTAGAAAAGAGCCTATTCAAAGGCATGGTAAATACAGTCTCCCAAAAGTCTTAGTACAGTTTTAAGTACTAATAGTCCAGGAGATCAACATGCCACCAA
CTTACAAAGGACGTCATTTGAAAGTTTACGATGAGGGGAGGGAACTTAGAGGAGGGGTCAGTAGGTGCAGCAAACCACCATGGCACACAGATACTGAACC
TGCACATTCTGCACATGTATCTTTTTTTTTAAGAAGAAATAAAAAAGAAAAAAAAGAAAAGAAAGTTTAATAAGCTTGGTTTCTTTGACACTTATCTGAG
TGTCATACCATACGCAGCTTTGTGAATTTTTTATACTTTGTCTCTCTATAGATATCTATATTAATTGTATATATTTTATATAGATATGTCTATGGAGAGA
TATATTATCACAAAAAAAGTAAAATATCTATCATATATAAATGTAATTATATGTAGTATATAGGGC

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.