Detailed information on TCONS_00129916

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00129916 573 275 UTR3 Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00129916 502 280 CDS_UTR Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00129916 522 264 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00129916 547 282 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00129916 522 264 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00129916 573 275 UTR3 Trans

Sequence

>TCONS_00153158 (1716 nt)
AAGTTAGTTTGAGGCGGGGCCCGCAGGGGGCGGGGTCTGCAGGAGGTGTGGTCAGGTAACTGGGCTGAGTTCCCACTAGGTGTGGTCTGGGAAGGCTGGG
GCGGTGGCAAGGTGGAGGGCGGGGGTGACAGCAGCCCGGAGCCGCGGAGCCTCAGCTTCCGCCTGGACCCAGCCTCGTGGGAGCCCCGCGGGTCCTGCCC
AGATGTGGAAGACTGAGGCCTGTTGAAAGTGCAGAGCTCAGCCCTGGCACCCTCTGTTCCCAAGAGCTCCATGCAGGTGCCACAGGATGGAGAAGACCTT
GCTGGCCAACCTTGGTACCACGGCCTCCTGTCCCGCCAGGTACCACCCACAGCAGGACCTCAGCACCATCTGGTGGGGAGCCTCTCCCACCCTTGCTGAG
GATTCCTGGGTCCCTGGATGAGGGACTTAGTGCCAAGGTCTATTGGGACAGGTGGCAGAGGGCTGGGGACTGTCTTGAAGGTTGGCTGGCTGGGGACTGT
CACTATATTTAAATTATCACTTTCTTTGGGATGATGAGATTGGTGATGGAGCTTAAGGAGAGTCCTAATGCCCCCAAACTACTCTTGGCTCTGGCCGTCT
CTCCCTCTGAACTCCATCTACCTCCTGGTATTTCCCTCTAAATGTGAGGCTCCCAAGCCAGGCATGGTGGCTCACGCCTGTAATCCCAACAGTTTGAAAG
GCCGAGGTGGGCGGATCACTTGAAGTCAGGAGTTCAAGACCAGCCTGGCCAACATTGTGAAACCCCATCTCTAATAAAAATACAAAAATTAGCCAGACAT
GGTGGTATGCGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCAGGAGGCAGAGGTTGTAGTGAGCCACAATTGTGCCACT
GCACTCCAGACTGGGTAACAGAGCGAGACTCTGTCAAAAACATAAATAAATAAACAAACAAATAAATCTGAGGCTCCCACCTCCATCTGAAACTCAGTTG
TCACCCCCAAAAATTCTGGGACCCTGAGCATCTCATGAAATCATGAGAGGCAGTAGAACTTAATAGTTAAAATCCCATAATTGAGACCCAGACACCCTAG
GTTCAAATCCAAACCCTACAATTTATATTGTATGTGACCTTGGGCAGGACATTTGACCTCTCTGGGCCTCAGTCTCCCGATCTTTAACATAGGGATAGCA
GGCCAGGCATGTTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATCACTTGAGGTCAGGAGTTCCAAACCAGTCTGGGCAACAT
AGCAGAACTCTGTCTCTACACAAAAAAAAAAAAAAAAGCGAAAATTATCCAGGCATGGGTGGCATGTACCTGTTGTCCCAACTACTCAGGAGGCTGAGAT
GGGAGGATTGCTTAAGCCCAGGAGGTCAAGGCTGTGAGTGAGCCATGAGTGCTCCACTGCACTCAGCCTGGGCAATCGAGAGAGACCTTGACTCAAAAAA
AAAAAAAAAAAAAAAAGGCCGGAAGAAAAAAATGGGCCGGGCATGGTGACTCATGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGTGGGTAGATCACCT
GAAGTCAGGAGTTCGAGACCAGCCTGACCTATATGATGAAACCCCCTCTCTACTAAAAATACAAAAAAGTAGCCAGGCATGGTGGCATGCACCTGTAATC
CCAGCTACTCGGGAGGC

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.