Detailed information on TCONS_00133039

lncRNA-RNA interactions

Number of interactions: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic TCONS_00133039 592 255 noncoding Trans
ENST00000448214 antisense antisense TCONS_00133039 603 281 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay TCONS_00133039 517 276 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00133039 614 260 noncoding Trans
TCONS_00030165 antisense novel protein coding TCONS_00133039 603 281 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00133039 550 273 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00133039 553 245 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00133039 560 257 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding TCONS_00133039 610 280 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding TCONS_00133039 610 280 UTR3 Trans
TCONS_00210637 polymerase (DNA directed), eta novel protein coding TCONS_00133039 527 275 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding TCONS_00133039 651 276 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00133039 609 276 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00133039 609 276 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding TCONS_00133039 607 270 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00133039 640 261 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00133039 608 253 UTR3 Trans

Sequence

>TCONS_00253055 (2441 nt)
GGCGCTCTCCCGTATTCTGGCGCCGCTGACTCCCAGGGCTGGGCTATCCTCTGAGTCGGGTGAGGCTGGGGCTGGGAGCCGGGCGCCACTGTGGCCGCTG
CTTTTCTGAGGGAAAAGAGCGCGGAGTGGGCCAGGTTTTGCAGGCCGGGCCAAGGTGGAGAAAAGGTTCCTGTGGAGCCTCAGGCCGGTGTGCTTTTTTT
CCCGGGACTGAGCTTCTGCAGCCCTGAGGCCTGGAGGCCCGGGCGGTAGTAACTGTGCCGGACCAGGTTCGTGGGTGCGGCCTGTGGTGCAGTTGGAGAC
CGAGGCCCCGCGCATCCTCGTCCGCGCTTCAGCCACTTAGGCTCGGCCGTAGCGAAAAGGCCCAAGAGGGAAGTCAGAGGTGAACGCCCCAGGATGAAGG
TCCCCTGCAAAACGCTGGGACCTAGATTTGGGGTGGGTGTCTGGGGTCTAGGAGGACACGCTGGACAGTTCCGAAAAGACACAGTGGGTGGTCCCGGGCG
TGGGCAACCGGGTGCGGAACTACAGCGTACCCGGAGCTGCGAACCCAGACGCGGGTGACTGCTGACCCTCTGCCCTGTCGTTTCCATTTGTGCATGCAGG
TGGCGGTTAGTTGGGGCCAGGGAAGCGTGGAGGGTGGGTTCCAATCGAGTCAAGAAAAGCCTGGGGTGTCCTGAACTCTGCCTGCTTCCCCAGCCCTGCC
AGTTTCCAGAGAAGGCGCTTGAGAAGGAGAAACGAATCGCTGCTGCTCTTCTAAAAGCCGGTTCCCTCTCTGGTGTCTGTGGACCCTGCTTCTGAAGTAC
ATGAACCTTGAGGAAAATTGACCAGTTCTAGCAGTTCTAAAATCATGGCTCGTGATTTGGTGATGTTCAGAGATGTGGCTGTAGACTTTTCTCAGGAAGA
ATGGGAATGCCTGAACTCATATCAGAGGAATTTGTACAGAGATGTGATATTAGAGAACTATAGCAACTTGGTGTCACTGGGTAAGCCTAGCATATCTGTG
TCAGATAATTTAGACATTCACAGGACTGAATTTCTGGGCTGTCTTTGTTTTTTTCCAAAGACGAAGTCTCGCTGAGTCACCAGGCTGAAGTGCAGTGGCG
CAATCTTGGCTTACTGCAACCTCTACCTCCTGGGTTCAAGCGATTCTACTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCACACCACCACACCCA
GCTAATTTTTGTATTTTAAGTAGAGACGGGGTTTCACCAGGTTGGCCGGGATGGTCTTGATCTCTTGACCTCATGATCTGCCCACCTCAGCCTCCCAAAG
TGCTGGGATTACAGGTGTGAGCCACCGCGTCTGGGCTGTCTTTCTAAAAACTAGCTAAATGTCTGCTTTGTGCTTTGACAGTAAGTACCACTATTAAGCA
CCTTCATCTTTCTGTATAATTCAGTGACCGTTATATTTTTCTTCGACTTTTCTGTTATTACCGGTCTTTAATGACAGCTGGATATAAATTCTTAGACACT
CATGGCAAAACCATTGTCAAAACAATCTGATTTCATACTGCTATGGATGGTCCATGTTATTTGTAACTCATTTACAGTGAGAATAGGAAGACAGAGGTGT
CTGGCTCTACATAGCTATTAAAAGAGCTTTTACAGTGTATGTGATGCTGGGTTGAATTGACAGTTTGTTAAAACTCAAGTGGACAGTATTCAGTTTCCTA
CAACAGACATATTTTAACTGCTTTGTGATTAAGTTTAAAATACATGAATTTGCATTTAATATTGTATGCATATCCTGGCAAGAAACTTATTTTTCTTTAA
AAAAAAAATCAAAAAATAGCAAATGTAGTACCTCATGAACATATATGATGGTTAACATGTACCAGGTACTCATCTAAACACTTACATTAAATCGAATCTC
ACAACAATGCTATATATACGCATTACTGTTATCCCTTTTTCACGTCTGAGAAAAATGAGGTGCAGAGAGATTGAATTAGTTGCTCTACTGACATGGGAAA
GAGAGGCAGGATTTGAAACCAGTGCTTTCAACTATTCTTTTCTCTCAAGAGACAGAGCCTGTGTAAGTTTAAATTAAAATAAAACCAGGTCCCTACTTCT
GTGTTCTTGTTTTTCCTTGTGATCCTGAAGTAACTCTATGCTATGAATGTTTTTCAATCCTGATAGTCTTCTTTGTTTTGAAGCCTTAAATAAATTCTTT
ATTATATTCTATTATTTATTTTTAAGCAGGATGTTCTATTTCTAAGCCAGATGTGATCACCCTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGTGAGG
GATGAGAAAAGAAGATGGACTCTAGGCCCTACCTTCAAATACCATCACCTTGGGATTCGTGTTTCAACATAGGAATTGTTACGGGAACACAAACATTCAG
CCCATAACAGATTTTATCAAAGAAGTACTTCATGAAATGTAA

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.