Detailed information on TCONS_00138667

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00138667 547 282 UTR3 Trans

Sequence

>TCONS_00116668 (3955 nt)
GCCATGTGAAGACAGAAGCAGAGATTTGAGTAACGCATGTATAAACTAAGGAACACAAAGGATTTCCAGGACCTCCAAAAAGGAAGTATGGTGTTGATGA
GCTTGAGTGAGAAAAAAAATGGATTTGGGTTAGAAGACTTGGGATCTTGCACTTACCAGGTGCTGAATGTGGAGAGGCAAATAAAATGGACACACAAGCC
TTGACCTCTTGGAGTGATTATGATCAAGATTATGATCATTGTGACACACATTAATCCAGGAAGCAAACAAGTGTGAAAACAGAGCTGCAGAGGTGACACT
TGGATGCCCCCTGGCCAGGTGGTGACTAGAGGTCAGATCTCTTCTCTAGTTGAGTGGTAGTCCAGGTTCCTGGGCTCTTTCCGCCCTGACCTACAGGCCT
GACAGAGCCGTCAAAACATGAGAGCCCTCTTTCTAATCATCTCACTTCTTGGAAAAAATAGAATGGGTGGTGTTCTATACTATCAACAACAGTAATTCTC
AAATTGCTGCATATCAGAATCATGTGGACAGTTTTGAAATACCTAGTGTCCAGACTGCACCCCAGACAAACTAAATCTAGTGAGGGGCCATCTGAAACTC
CCCAGGTAATTCCAGTATGCAGCCAAGATTGACAATCCATGCAGTAGAGACCTGGAGGAAAGTTAATAATACAGATAGCATTACTGGTCCAGGGATTATT
ACACAGAGATATGCCAATTTTCTTTACAAACAACAGGAGATACAGGCTCCTAAAGTACCCTCTGCTTTATGCTTTTCTCTCTGGAATGCATGCTTCAACT
TACCCATAGAGTGTAGCTGTGAGTCTAGGGTTCGGGAGGGGGCAGAACAGCTGTTTCCATGAGCCAAAAGACACCTGGCATCTTAACAATCTGAGAGGCA
GGCTGGCTGGACCTCTCTTCTTTGCGTACTCCTGGTGGTTAGATAAACCCTTCCCTGGCCATTTCTGCCATAGTACCTGGGGGAACAAAATAGGATAAAA
GGCAGCAAGCTCCTAAATGTTCAGTTTGTAGGGCTAGATAAGGCAAAGCACTTTGGGAGTAGCTCACAGTGGAAGTATCTCTGGGGCCATCCATCAATAA
CATTACCACCAGAGGTTTCTGTTATTTTAGGGGAATTCCCAGCTACTTACTAGTTCCACACAATGACGGTGTTCTCTGCATCTCAACTCAGAATTAGGTA
ACAAAGCTAAAATTGAATGTACTTCTGTAGAGTTTTGAGGTATTGCCTGGGAAATTGGTTCTTGATGGAGCAAGACAGGGCGTTTTAGTGGCTGCCTGTG
TTATTTGTTGCAACACAGAAAAATGAGATAAACCTCAGCCTTGTTTGTATATATGATATTTATGTCTGGCATCAACATAAAATAAGCTCATTGCCTGAAG
TGCATTTTTTGCAGAGATTTGAGGCTAACTTGTTAAAGCATCATATTATCCAACACTTAAACAATTTTGAAATATTAAAAAAATTTCCGAACTACGTATC
ACTCTTCTGACTTCCAAATATACTAAACAGTAATGATATTTTCAAAAGGAAGAGATCTTGTGTATGTGTTTGGGTGGTGACCCAACCCAAACAAGAAAGA
TATTTTAAAAAATCAGAATGAAGGCCCTTGGAAAACTTGTTCTCTCCTCCCTTCCCCCTTCTTTCTTTCCTCCTTCCCTCCTGTATTTATTGAATACTAA
CTCTGTGTTAGGAAATAGACCTTGTCTTCGGGAGCTTAGGAGCTAAAAGAGGAAAAAGACATTGTCTTAGTCCATTTATTCTGCTATAAGAAAATACCTT
AGACTAGGTACTTTATAAATATTAGAAATGTATGTCTCATATTTCTGGGGGCTGGGAAGTCCAAGATCAAGAGTCCAGTAGATTCAGTGTCTGGTGAAGG
CTCACTCTCTGCTTCACAGACGGCCCCTCTTACTGTGTCCTCACATGGTGGAAAGGCAAAAGGGGCAAAAAGGGACAAATGCTGTTTCCCCATCCGGTAG
AAGAGAAGGGTGGGCAAAAAGGGACAAACTTGCTCTCTCAAGTCCTTTTATAAGGGCACTAATCCCATCCATGAGGGCAGAGCCCTCACAGCCTAATCAC
CTTCCCAAGGCCCCCTCTTAATGCCATTACCTTAAGGTTTAAGTTTCAACATATGAATATCGGAGGGACACATGTTCAAGCCAAAGCAGATACCAAAGTA
AATGAGAGACAGAAAACATTATAGGGTCTATAATTGAAGATGAGACCCTTCTCCCCCTCCCTCCCTCCCTTCCTCTCTTTTCTGCCTTACTAAAAATGCC
AGCAGTAACTTGCAAAGATACATACACATAAGGTTAAAAAGAAGAAACTGTGAGGGAGAAATTTGAAAGTGAGAAAATGATGGAAGTCAGGTTAGTCAAC
AGATTACATTCCTTAAGTTTTCTCTAAATTATTGAAGGTGGGCCACAAATTTAGATCTAACTTCCTAGAAGCCAGCACAAAGAGGAATACATAACCAATT
GCAAAATTCAGTGTCCATAGGATGAAAATTATGTAGTTCCCCCAAAGAACCACAGGGATTAGGTGCAGTTTTTATAAGGTATTATGGGATGTCGTGAGCA
ATGTCCTCAGTAACATCCCTAATGGCACCAAGGAGTTTTGTAGAGCATGACAAAAATTTGTATGGTTTGGAGAAAGCAGAAAAGAGATAATATTAAATCC
TGGCCGGAGCTAAACCCTTTTGTTGGGATTGGACTGGATTAGTTTGAGCCTCTGCTTATATTTTCCTGTAATTCAGCATTCTATTTTAGGTACTGCACTA
GGGGTATGCACTGGAGGTTATGGGAGTGGAGAGGGACACTCACCTTTGCCTCTGCCAGGGAAATGTGGGCTGATGCCAGCACTCTGGATAAGATGATGCC
TTTTGAAGGATCTGGTTGGAAGTTATTCAGAAGGATAAGGCAAGGAAGGCATTTCATGCATGAGAAAAGAGCATCAGTGTGGTACGGAGGTATATTGAAT
GCTGACAGGGAGCTACAAGGCAGTTTAGAACTGAAAAAGTATGAAATATGAGGCAGGCAAAGTATGGTAGGAGTTGGAGCTGAAAAAGTAAGCAAGCATC
AGACTGTGTCCATCTTACATGCTCTGCTAAGAAATGTAGCTTCACTCCACAGAAAGGTGCTGAGATGCCCCCAAAGGGATTTAGGCAGGGGAGTTGTATC
TGCTAACTATTGCATTAGTAATGCTGCACAATAAATCTCCCCAAAAGTCGGTAGCTTAAACAACAGTCTTGTTTTCTCACACACAGATCTGTGAGTCTGT
GAGCATAGCTCTGCTTCATGCTGCAGATCTTCAGGTTGGCTGGGGTGGCTGAGTGTGTGGCTCAGACTGAAGGAACAGCAGCTACCCAAGGTTAGCTCTT
CTCCTGGTGAAGCGTGGAAAGAACAGACGGGGTCTCACTCTTTCGACCAGAGTGGAGTGCAGTGGCACGATCCTGGCTCACCACAACCTCCGCGTCCCAG
GCTCAAGCGATTCTCCTGCCTCAGCCTCCCGATAGCTGGGATTATAGGCACGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAAAGATGGGGTTT
CACCATATTGGCCAGGCTGGTCTTGAATTCCTGACCTCAAATGATCCACCTGCATCGGACGCCCAAAGTGCTGGGATTACAGTTATGAGCCACCGCCCCC
GGCCACCAGGAAAAGTTTTTAAAGGGGCATGTGCCCCTTTGCAGTTGTTATTACCTTCTTCCTGCCTTACACGTAGCTGGATGGCTAGAGTTCCACCAAC
CATGTTATGGACACGAGGCAATCATCCCAAAGGGGACTGAGCTGAGAGAAGGAGCCTAAGATTTTGACGACCTCATGAAGATACCATACCAGCCCTCAGC
TGCCTCTCTTTAGAATACCAGGTAGGTGAGAAAAAATAAATGACTTTTTTAAAGTG

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.