Detailed information on TCONS_00139999

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000287675 endo/exonuclease (5-3), endonuclease G-like protein coding TCONS_00139999 502 281 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding TCONS_00139999 566 287 UTR5 Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript TCONS_00139999 557 287 noncoding Trans
ENST00000620139 melanoregulin protein coding TCONS_00139999 597 285 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding TCONS_00139999 611 280 UTR3 Trans
TCONS_00020726 processed_transcript novel protein coding TCONS_00139999 618 286 UTR5 Trans
TCONS_00020768 processed_transcript novel protein coding TCONS_00139999 618 286 UTR5 Trans
TCONS_00109814 lincRNA novel protein coding TCONS_00139999 528 282 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00139999 590 280 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding TCONS_00139999 600 281 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00139999 609 292 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding TCONS_00139999 648 280 noncoding Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00139999 637 306 UTR5 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding TCONS_00139999 525 281 UTR3 Trans

Sequence

>TCONS_00251977 (4125 nt)
ACAAGTATGAAGAGAATGTCGGGAGAGGAAGTGGTGGCTATGAGTCAGCATGAGTCATCTCGTTCCAATGAGAATGAAGGCTGAGGTGTGCGCCTTTTTT
TTTTTTTCCTTCTTAGTCGTGTGTACATCATTGGGAATGGAGGGAAATAAATGACTGGATGGTCGCTGCTTTTTAAGTTTCAAATTGACATTCCAGACAA
GCGGTGCCTGAGCCCGTGCCTGTCTTCAGATCTTCACAGCACAGTTCCTGGGAAGGTGGAGCCACCAGCCTCTCCTTGACAAGCAAAGTGGATCAGCAAA
GGCTGCAGTCACCAGCATCTTTTCCAACCTTAATGAACTGTATCCTCAAAAGAACACTATCAGACTGGTAAGACAAGCATTATTGTCCCACTTCACAGAT
GAAGAGCTTGGGGGCCCTGTGGATGTGTAGGAGAGTCGGCCTTCCTTTTTATAGGCCTTTTGCTGAGCTCAGAGGACAGAGCAGAAGACAAAGCCGAAAG
CAGCCCTAAGCAGACACTATCCCAGCCCAAGGAGCTATGCAGACAGCTCCTGCCTAGAGGAGAAACAATTCTCTCCTTCAGCCAGGCATGTGGCACAGAG
GTGAACAGGAAATGCTTAGGGAGACAGTTCACAGATATATATGTACTTCACAGGGCACAATTTAATCCATAAATCAATCATGGATCACTGCTAAAGAAAA
CAAAATATGCTGCCACTAATTTGCCACCACCCTGTGAGCATGATTGGATGATGTTTATTTTGATTAGGAGATTGCTCCATTTATAAATCTTCAATACATC
CTGTCCCCCTAAAACGGCATCTGGATCTTTTGAGGGTTAAAAAAAAAAAAAGTGAAATTGGATGAGGGATGAGAGCTGGACTTCTGTGTGTCCCGGGGTC
TCTGGATCCACAGCCTGGTGCCTAGCATCAGTTAAGCCCACGCTGGGGTCGCATCACATCCCGCAAAGCCACGTGCTCTGTGAGGCCAACAGGAGCCCCG
CCGGGTGGACCAGCTGGAATCTCAGAGAGCGCCGACTCTGAAAATACCCGGCTCTGCAGAAGCACGCTGGGCCCAGGGGGCTTCTAGACTGACAGCTCCA
TTTATCAACTACCTATTGGTTTTAAAAATTGGAGTGTCTTTTCCGCGTTGACTGATTTTGGCTCTAAGAGATGTCGCTGGTCATTTCAGAGTGACTGAAC
CTCCCCTCTAACAGATCCCGGGAATTGTTTTCAGGAAAGGTAAAAGGCAGCCTTTTCTGTCACAACACAACGCTGAGCCGGCAGCCTGGCTCTGTCAGGA
TCTGGGGCTCCAGCGCCCGAGAAGCCCAGCCTCGCCGGCGGCCAAGTTCACCGCGAGGCCACGCGCTGCCTGCGCTGCGCTCCCGGACCCGCACCGACCG
CAGCGCGCGCCGCCGGTGCTTCTCCCACCCCAGCCTGGAAGCTGCCTCCCTCCGCCTATCCCTGCAGGATAAGAAGCCCGAGGAGGCGGAGCATGGAACT
CGACAGTTAAAACATTTAAGAGAGAAAACCTAGTGTCTTGCTGGCCTGAAATCGAGTACGCAGCCCGGGGTGATCAGGGTCTCCCGGCCCGGATGTGTGA
GACTTGCTTCCCCTGGGCAATAGGCGATACGATGCTTTAGGAGGAAGGTATCTCTCCCTCCTAAGCCCCGGAGGGGAGAACTTCCAAAGACAGAAAACCA
CAGGGTTCCTGGCACAGAGCTTTCCCTTTATCAGCTAAAGCAGAATCTTTTCTGGCCTTAACCTGGCCCCTTCCTCTAACTGTAGGCAGAGAGGCAGACA
GAAAAGCACTTGCTGAAACACAAAGTTTTGTTCTGTCCTCAACGAACTGTCTAGAGTTGATTGCTGATAGTCGTGGTGCATTATGCCTTCCTGGTTTTCA
TTTAATTGGGCACCACGCTGCCTTTCAAGACGCCTTAAAGGAACCAACAACCAAATCCAAGAGAGCTGGACAGACCATTGAACACACAGTAGGCTGTGTC
TCGTGGCTTTCGTTGTCTGGTGCCTCAAAGAAAACACCAGAAAGATTGTTTCTAAGCTAGAGCCACCCCAGATTGCTTAAAGTGCAAAGCTCACTGCTGT
TGGGGGTACCCTTGTGAGACACTGGAAAGCTGGTTTTACCGTGGCCCTATGAAGAGGAAGACTGAAATTTAGACAGTAATACCTTTACTAGGATTGGAAA
AGATTTGGTTAATGACAGCCCTGTTATTTCTAAAACCCATTATCACTGTATGAGAGATTCCTTTGCGCTGCATCCTCGACAGTGCTTCCTAAGGTCCGTC
TTTTCTATTGTATTCATTTTAATGGGTGCATAGCCGTATCTCGTTGTGATTTTAATGTGCATCTCCCTAGTGACTAATAATGATGGGACGCTTTTCATAT
ACTTGTTTGTCATTCATAACTCTTCCTTGGTGAAATGTCTGTTTAGATATTTTGTCCATTTTTTTTATTTGGATTGTTTGATTTCTTATTATTGAGTTTT
GGGAGTTCTTTATGTATTGTGGATACAAGTTCCTTATTAGGTGTATGATTTGCAAATATTTTCTTCAAGCCTGTAGCTTGTTCTTTCATTTTCTTAACAA
TGTCTTTTGTTTTTAATTTCAAAGAAATCCAATTTGTCAATATTTTCTTTTACAGATTATGCTTTTGATGTAAGAAATCTTTGCCTAACCTAAGTCACAA
CAATATTCTCCTAGAAGCTGTAGAAATTTCAATCTGTAATGATCAATTTTGAACTCGTTTTTATATTTATTTATTTATTTATTCTTTGAGATGGAGTCTC
ACTCTGTCGCCCAGGCTGGAGTGCAATGGCACTATCTTGGCTCACTGCAACTTCCACTTCCCAGGTTCAAGCGATTCTCCTGTCTCAGCTTCCTGAGTAG
CTGGGATTACAGGTGTGTGCCATCACGCCCGGCTAATTTTTTGTATTTTAGTAGAGACAGAGTTCCACCATGTTGCCCAGGCTGGTTTCGAATTCCTGAG
CTCAGGCCATCCACCCGCCTCGGCCTCCCAAGGTGCTAGGATTGCAGGCGTGAGCCACCATGCCCGACCCAGAACTTATTTTTAAATATGGTGTGAGGCA
TGGAGCAAAGTTTACTTTTTTACATGTGTTTACCCAATTGTTCCCTCAACATTTGTTGAAAAGACATTTCTCCACTGCATTGTTTTATGTCTTTGTCGAA
AATCAGTGTATTTTTGGACTCTTGATTCTAACGTTCCATTGATGTTTGTCTTGATTTATTTTTTTGGCCTTGAAACAACAATTTATTTTCATCTCTCATG
ATATTGGAGGTTGGCCAGGTTCAGCTGGGCAATTCTTACTTGGGTTCTCTCATGCATTTGCAGTTGGATGATGGCTGGAGCAGCAATCTGGAGGCTCAAG
GAGGCTGAAGGCCACATATGACTCCTTCATTTCCATATCTAGCACCTCAGTGGAGTAGGCTGGAACAGCTGGGGAATGATTGAGCTTCTAATTCTCTCCC
TACCTCCTATCTATGTGTCTAGTTTTCACTTCTTCACAGTACGGCATTCTCAGGAAAGTCAGACTTCTTAGTAGTGGCTTACCCTAGAATGACTTTTCCA
AAAGCACATGTTTCAAGAGACCCAGGCAGAAGCTGCAAAGTTTCCTGTGACCTAGCTTACACATCCTATAGTTTCTTTTGCCATATTCTGTAAGGAAAGC
AAGTTGCTATGGCCAGACCAGGTTGAAGGAGAAGGGTATGAGACTCTACCTCTCGATTTCAGGAGCATTATTACGGAGAGGGAAGGATTGTTGGTTGCTT
CTGTATAAGCAATGCCAATAATAGAAGGCTCCACTGTCCTGATTAATGTAGCTTTATAACAAGTCTCAAAATCAAGCAATGTTAGTCCTTCAACTTTGTT
CTTCCTTTACAAAGTTGTTTTGACTGTGCTAGGTCCCTTCCATTTACATTCGAATTTTAGAATCAGTTTGTCAATTTCTACCAAAAAGAAAGCCCTTATG
AAATTTTGATCAAGATTGCATTGAATTTATGGATCAATTTAATGAGAACTTACAATTCAAATTATTTTAAGATCAATTTGGTGAAAATTTACACCTTAAA
AATATTGAGTCTTTTGACCTATGAAC

Expression



Full and truncated open reading frames discovered in TCONS_00251977

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.