Detailed information on TCONS_00139999

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000287675 endo/exonuclease (5-3), endonuclease G-l... protein coding TCONS_00139999 502 281 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding TCONS_00139999 566 287 UTR5 Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript TCONS_00139999 557 287 noncoding Trans
ENST00000620139 melanoregulin protein coding TCONS_00139999 597 285 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding TCONS_00139999 611 280 UTR3 Trans
TCONS_00020726 processed_transcript novel protein coding TCONS_00139999 618 286 UTR5 Trans
TCONS_00020768 processed_transcript novel protein coding TCONS_00139999 618 286 UTR5 Trans
TCONS_00109814 lincRNA novel protein coding TCONS_00139999 528 282 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00139999 590 280 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding TCONS_00139999 600 281 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00139999 609 292 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding TCONS_00139999 648 280 noncoding Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00139999 637 306 UTR5 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding TCONS_00139999 525 281 UTR3 Trans

Sequence

>TCONS_00139999 (4126 nt)
ACAAGTATGAAGAGAATGTCGGGAGAGGAAGTGGTGGCTATGAGTCAGCATGAGTCATCTCGTTCCAATGAGAATGAAGGCTGAGGTGTGCGCCTTTTTT<br />TTTTTTTCCTTCTTAGTCGTGTGTACATCATTGGGAATGGAGGGAAATAAATGACTGGATGGTCGCTGCTTTTTAAGTTTCAAATTGACATTCCAGACAA<br />GCGGTGCCTGAGCCCGTGCCTGTCTTCAGATCTTCACAGCACAGTTCCTGGGAAGGTGGAGCCACCAGCCTCTCCTTGACAAGCAAAGTGGATCAGCAAA<br />GGCTGCAGTCACCAGCATCTTTTCCAACCTTAATGAACTGTATCCTCAAAAGAACACTATCAGACTGGTAAGACAAGCATTATTGTCCCACTTCACAGAT<br />GAAGAGCTTGGGGGCCCTGTGGATGTGTAGGAGAGTCGGCCTTCCTTTTTATAGGCCTTTTGCTGAGCTCAGAGGACAGAGCAGAAGACAAAGCCGAAAG<br />CAGCCCTAAGCAGACACTATCCCAGCCCAAGGAGCTATGCAGACAGCTCCTGCCTAGAGGAGAAACAATTCTCTCCTTCAGCCAGGCATGTGGCACAGAG<br />GTGAACAGGAAATGCTTAGGGAGACAGTTCACAGATATATATGTACTTCACAGGGCACAATTTAATCCATAAATCAATCATGGATCACTGCTAAAGAAAA<br />CAAAATATGCTGCCACTAATTTGCCACCACCCTGTGAGCATGATTGGATGATGTTTATTTTGATTAGGAGATTGCTCCATTTATAAATCTTCAATACATC<br />CTGTCCCCCTAAAACGGCATCTGGATCTTTTGAGGGTTAAAAAAAAAAAAAGTGAAATTGGATGAGGGATGAGAGCTGGACTTCTGTGTGTCCCGGGGTC<br />TCTGGATCCACAGCCTGGTGCCTAGCATCAGTTAAGCCCACGCTGGGGTCGCATCACATCCCGCAAAGCCACGTGCTCTGTGAGGCCAACAGGAGCCCCG<br />CCGGGTGGACCAGCTGGAATCTCAGAGAGCGCCGACTCTGAAAATACCCGGCTCTGCAGAAGCACGCTGGGCCCAGGGGGCTTCTAGACTGACAGCTCCA<br />TTTATCAACTACCTATTGGTTTTAAAAATTGGAGTGTCTTTTCCGCGTTGACTGATTTTGGCTCTAAGAGATGTCGCTGGTCATTTCAGAGTGACTGAAC<br />CTCCCCTCTAACAGATCCCGGGAATTGTTTTCAGGAAAGGTAAAAGGCAGCCTTTTCTGTCACAACACAACGCTGAGCCGGCAGCCTGGCTCTGTCAGGA<br />TCTGGGGCTCCAGCGCCCGAGAAGCCCAGCCTCGCCGGCGGCCAAGTTCACCGCGAGGCCACGCGCTGCCTGCGCTGCGCTCCCGGACCCGCACCGACCG<br />CAGCGCGCGCCGCCGGTGCTTCTCCCACCCCAGCCTGGAAGCTGCCTCCCTCCGCCTATCCCTGCAGGATAAGAAGCCCGAGGAGGCGGAGCATGGAACT<br />CGACAGTTAAAACATTTAAGAGAGAAAACCTAGTGTCTTGCTGGCCTGAAATCGAGTACGCAGCCCGGGGTGATCAGGGTCTCCCGGCCCGGATGTGTGA<br />GACTTGCTTCCCCTGGGCAATAGGCGATACGATGCTTTAGGAGGAAGGTATCTCTCCCTCCTAAGCCCCGGAGGGGAGAACTTCCAAAGACAGAAAACCA<br />CAGGGTTCCTGGCACAGAGCTTTCCCTTTATCAGCTAAAGCAGAATCTTTTCTGGCCTTAACCTGGCCCCTTCCTCTAACTGTAGGCAGAGAGGCAGACA<br />GAAAAGCACTTGCTGAAACACAAAGTTTTGTTCTGTCCTCAACGAACTGTCTAGAGTTGATTGCTGATAGTCGTGGTGCATTATGCCTTCCTGGTTTTCA<br />TTTAATTGGGCACCACGCTGCCTTTCAAGACGCCTTAAAGGAACCAACAACCAAATCCAAGAGAGCTGGACAGACCATTGAACACACAGTAGGCTGTGTC<br />TCGTGGCTTTCGTTGTCTGGTGCCTCAAAGAAAACACCAGAAAGATTGTTTCTAAGCTAGAGCCACCCCAGATTGCTTAAAGTGCAAAGCTCACTGCTGT<br />TGGGGGTACCCTTGTGAGACACTGGAAAGCTGGTTTTACCGTGGCCCTATGAAGAGGAAGACTGAAATTTAGACAGTAATACCTTTACTAGGATTGGAAA<br />AGATTTGGTTAATGACAGCCCTGTTATTTCTAAAACCCATTATCACTGTATGAGAGATTCCTTTGCGCTGCATCCTCGACAGTGCTTCCTAAGGTCCGTC<br />TTTTCTATTGTATTCATTTTAATGGGTGCATAGCCGTATCTCGTTGTGATTTTAATGTGCATCTCCCTAGTGACTAATAATGATGGGACGCTTTTCATAT<br />ACTTGTTTGTCATTCATAACTCTTCCTTGGTGAAATGTCTGTTTAGATATTTTGTCCATTTTTTTTATTTGGATTGTTTGATTTCTTATTATTGAGTTTT<br />GGGAGTTCTTTATGTATTGTGGATACAAGTTCCTTATTAGGTGTATGATTTGCAAATATTTTCTTCAAGCCTGTAGCTTGTTCTTTCATTTTCTTAACAA<br />TGTCTTTTGTTTTTAATTTCAAAGAAATCCAATTTGTCAATATTTTCTTTTACAGATTATGCTTTTGATGTAAGAAATCTTTGCCTAACCTAAGTCACAA<br />CAATATTCTCCTAGAAGCTGTAGAAATTTCAATCTGTAATGATCAATTTTGAACTCGTTTTTATATTTATTTATTTATTTATTCTTTGAGATGGAGTCTC<br />ACTCTGTCGCCCAGGCTGGAGTGCAATGGCACTATCTTGGCTCACTGCAACTTCCACTTCCCAGGTTCAAGCGATTCTCCTGTCTCAGCTTCCTGAGTAG<br />CTGGGATTACAGGTGTGTGCCATCACGCCCGGCTAATTTTTTGTATTTTAGTAGAGACAGAGTTCCACCATGTTGCCCAGGCTGGTTTCGAATTCCTGAG<br />CTCAGGCCATCCACCCGCCTCGGCCTCCCAAGGTGCTAGGATTGCAGGCGTGAGCCACCATGCCCGACCCAGAACTTATTTTTAAATATGGTGTGAGGCA<br />TGGAGCAAAGTTTACTTTTTTACATGTGTTTACCCAATTGTTCCCTCAACATTTGTTGAAAAGACATTTCTCCACTGCATTGTTTTATGTCTTTGTCGAA<br />AATCAGTGTATTTTTGGACTCTTGATTCTAACGTTCCATTGATGTTTGTCTTGATTTATTTTTTTGGCCTTGAAACAACAATTTATTTTCATCTCTCATG<br />ATATTGGAGGTTGGCCAGGTTCAGCTGGGCAATTCTTACTTGGGTTCTCTCATGCATTTGCAGTTGGATGATGGCTGGAGCAGCAATCTGGAGGCTCAAG<br />GAGGCTGAAGGCCACATATGACTCCTTCATTTCCATATCTAGCACCTCAGTGGAGTAGGCTGGAACAGCTGGGGAATGATTGAGCTTCTAATTCTCTCCC<br />TACCTCCTATCTATGTGTCTAGTTTTCACTTCTTCACAGTACGGCATTCTCAGGAAAGTCAGACTTCTTAGTAGTGGCTTACCCTAGAATGACTTTTCCA<br />AAAGCACATGTTTCAAGAGACCCAGGCAGAAGCTGCAAAGTTTCCTGTGACCTAGCTTACACATCCTATAGTTTCTTTTGCCATATTCTGTAAGGAAAGC<br />AAGTTGCTATGGCCAGACCAGGTTGAAGGAGAAGGGTATGAGACTCTACCTCTCGATTTCAGGAGCATTATTACGGAGAGGGAAGGATTGTTGGTTGCTT<br />CTGTATAAGCAATGCCAATAATAGAAGGCTCCACTGTCCTGATTAATGTAGCTTTATAACAAGTCTCAAAATCAAGCAATGTTAGTCCTTCAACTTTGTT<br />CTTCCTTTACAAAGTTGTTTTGACTGTGCTAGGTCCCTTCCATTTACATTCGAATTTTAGAATCAGTTTGTCAATTTCTACCAAAAAGAAAGCCCTTATG<br />AAATTTTGATCAAGATTGCATTGAATTTATGGATCAATTTAATGAGAACTTACAATTCAAATTATTTTAAGATCAATTTGGTGAAAATTTACACCTTAAA<br />AATATTGAGTCTTTTGACCTATGAAC

Expression



Full and truncated open reading frames discovered in TCONS_00139999

In silico ORF/peptide predictions
>peptide 1 (82 aa)
MESHSVAQAGVQWHYLGSLQLPLPRFKRFSCLSFLSSWDYRCVPSRPANFLYFSRDRVPPCCPGWFRIPELRPSTRLGLPRC

>peptide 2 (60 aa)
MPDPELIFKYGVRHGAKFTFLHVFTQLFPQHLLKRHFSTALFYVFVENQCIFGLLILTFH

>peptide 3 (59 aa)
MRDESWTSVCPGVSGSTAWCLASVKPTLGSHHIPQSHVLCEANRSPAGWTSWNLRERRL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT072142 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 5.0E-25)