Detailed information on TCONS_00142544

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000283254 sodium channel, voltage-gated, type III, alpha subunit protein coding TCONS_00142544 1090 386 CDS Cis
ENST00000360093 sodium channel, voltage-gated, type III, alpha subunit protein coding TCONS_00142544 1090 386 CDS Cis

Sequence

>ENST00000360093 (5174 nt)
TGTAATAATTCTTGCTTGGTATAAAGTTAGCAAACATCATAAAATTAAGTTTTTTAATCTGAAAAAAGTATCTAGCCAAAACTGTAGTAAACATTATAAT
TAAAAGCAAAATATTGAAAGTTTTTTCTGAATTCGGAAATGAGACCCTCACCACTTCTATCCAACATTATACTAGAGGTGGTAGTCAGTAAAATGAAGGT
AGAAACAGAACTAACGTGGATTAGAAGAGAAAAAACAAAACTGTAATTAAAAAAATATTAAAAATCCAAACAAAGAAATCTCAAATGATTTAGAAATAAA
TTTATACAGTATATGAGAGAGATGAACAAGTTTCTAGATTCCTGGTCAATATAAACAAATGTATTTTTATATACTGGCAACAAACAAAAATGAAATGTAA
AAAAATACCTTTGATAAAGAATTAAAAACATCAAATTATTAATAATCTAATTAATGAAGTATAAGACTCCTATATATAATAAAACCTCACTAAGAGAGAT
GAATGAAGACTTGAGTAAATGGAAAGACATGTTATGGATTGGAAACCTAATAATCTCAATTATCACCAAATTGATGTATTGGTTCAGTGCACTCCTGATC
AAGACTCCAGTTGGTTTCATTTTGCTAATGGACCAGCTCACTCTAAAATGTTTTTAGAAGTTCAAGTACCAAGAAAGCTAAGATGATCTTAAATAACAAT
ATATTGTAGCCACCCAATGAGCTTTCCTTGCCCACTGCCCAGAAGAGCCAATCTATTAAGACAGGGAAATTACAATAGAGAAAGAGATTAATGCACTCAG
AGTGGGCTAAATGGGAGACTGGAGTTTTATTACTCAAATCTGTCTCCCTGATAATTCAGAGACTGGAGTTTTTTCAGGATAATTTGGCAGGTATGGGGCT
AGGGAGTGGGAAGTGTTGACTGGTTGGGTTGGAGATTAAATCACAGGGAGTTGAAGCAAGAAGCAAGTTTTTTTGCTGTCTTCTGTTCCTGGCTGGGATT
GCAGACTTTGTTGAGCCTGATAACCAGTCTGGGTGGTGCCAGCTGGTCCATCAGAATGCAGGGGCTAAAAAATATCTCAAACAACAATCTTAGGTTTTAC
AATAGTGATGTTATTCCTAGGAGCAATTGGGAAGGTTAAGAACCTTGGGACTCTGGCTGCATGACTCCTAAACCATAATTTCTAATCTTGTGGTTAATTT
GTTAGTCTTACAAAGGTAGTCTGAGGGCCAGGCAGGACAGGTATTGTTTCAGGAAAAGGCAGCGCTTGTCAGTCTGGAGTCACTGATGTGAAGACACTGG
CAGCAGCTGTGTAGGAGGGGCTGGGGCTGTGCACTCCGGGAGAGCTGGTGGGGGGTGGTAACAGGCAGGAGCCCTACCACCTACTGAGTTGATGGAGCAG
GAGTCCCACGTTCCTGGGCACAGCTGCAGCCACCCAGTCCTGGCTCTAGACCCAGGCATCCCTGCACTCCTGGGGGCCCAGGAAGCCCCTGGTCCCTGCA
GGCTTGAAAGTGCCTGCTCCTGTTGTCTGGCCTCTCCCCACTCCTGGTGCCCACTCCAGGGTGGAGCAAAGTTGCAGCTGAGCCTGGGCACTGTGGTGAC
CTGGCCAGGTGTGCATATACTCTAGGTGGTGCTGACACACCAGCTTCCTGCTTCTTTAGCCCTCTCTGGACTTTGGGTGCCCAAGAGCATGGGAGCGAGG
CCAAGGGGTATTGAGGGTGGCTTAGCACAGTCTCACAGGAGCCCTTTGGCCTGAACAGCCTGTGTGCTGTGGACCACATGTTGATGGCAGCTGGAGGCAG
ACAGACAGGCTCCTGTGTGGAAAGGGGCGGGTCCCTCGTGAAGCCCCACCTTCAAGCCAGGGATGACCTGAAGCCTGAGGGCTGGGCTCAGTTCTGGGTG
GAGTCCACTGCCTGGGGTGAAAACTTATGGTGCTTTTTCTGGGCCTGCCCATGACTGCCCATGGGCCAATCAGCACACACTTCCTCCCTTCTGAGCCCAT
AAAAACCCCAGACCCAGCCAGACTCATACAGATGTGGGGACTACTAGCTGTGGGAAGAGCTACCCACTCTGGGTCTCCTCTCTGCTGAGAGCTGGACACT
TGTTGGGACTACCTGCCTGGAGAAAGGAGCTACCCACTTAGGTTCTCCCAAGAGCTGTTCTGTTGCTCAGTAAAGCTCCTCTTTGCCTTGCTCATGCTCT
AGTTGTCTGTGTACCTCATTCTTCCTGGATGTGGGACAAGAACTTGGGACCTGATGAATGGTGGGACTGAAAGAGCTATAACACAAACAGGGCTGAAATG
CTTCCACCTCCCCTACTGTCCATGTTGGGAACAACAAGATGGAGAGAAGAGCTGTGGCCCTTCAGGGAGCCCAGACCTAGGGGCTCCTCAAACCAGGGCT
GTGACACCCTCTTTGAGGCTCTGTGGTTCCTGGTATCTCCAAGTTTCCAGGCACCACTGCATTCCCTGGTGCTTGTAGTGGAAGTGATTTGTGGTATACC
TGGTCTAGATACAGCCTGGCAAGAAACCAGTGCCCGTGCTGGTGCCTGGAACTGCCTGCCCTGCTGCAGCTGGCACGTATGGTTGTGAGAAGTGGCTGGA
CCCCATGGTTGCTCACACACCCCTCACTGCTCTGCGCTTGGCTTGCCCTTAGCAGGTGTGGGATCTGGTGCCAGTAGTGCAAGCCAAGTGCAGCCTGCCA
GGCCCAGTGGGTGGAATGAACCCAGTGGGCCCAAGCAAAACTCAGGCAAAGGTGCCACCAGCCACAGAGGTTTCTGGCCAGAAAAGTGACACCCTAAGGA
TCCCAAGACATTTCCAACTTTGTTTCAAAGTTAAACTATGAACTAAATTCCTCCATAGTTAACTCAGCCTACACCCAGAAATGAACATGGGAAGCTTGGA
GGTTAAAGGCAAGATGGAGCCAGTTAGGTCAGATATTTTTCACTGAAATAATTTTCTCACTGTTATCACTTTTGCAAAGGTGGTTTCAATATTGAGAGGG
TTTACTCTACTATATGTATCAATACTTATAAAGTTGCAATAGTTAATATGGTATACTATTGATGAACAAACAAAAATAAACAGAATAGAAAGTCCAGAAT
TGTATTCCTTTTTTTATGGACACTTGACATGACAAAAAATTAGCACTTTGAAGCATTAAGGGAGAACTCTTGAAATGGTTCTGGTTCAACTAGACATTTT
TAGTAATAAAAAAATGGAACTTAGATCCCATTTCCCACCAGACAAAGAATTAATTTCAAATTAGTCATAGAGCTAAATGTAAAAACAATTAAAATGAAAT
GAGAAAGAAACCACACTTTGGGAAACTCAGTTGTAATAATGACCAGATTCTTTGATGATATCTAGTTCCCACATCAAGGGTCTTTATATGTAGTTACACG
TCTCCTATGATAATTTGTGACATGCCACTCATATACTTTCTTGTCTTCCTGCTTTTACTATTAATTTTTCTTTGGTTTGGAACTCATAAGAATATCTTTT
CTATACTTTCTCAGCCTATGAAAACCCTGTCCTTTTCTTACAGATTCAGGTTAAATTCCATGTATCTGTAGAGTGCTGCCTAATATTCCCAGTCTGAATG
AAGGTATTATTTCCCCTTACACTCTCCCTCATCACAGAGTTTCTATTTTACTTTCATTTAATGTAGTTTGTTTTGCGTATGTTGCTCTTTAGTCATTCCA
CCAAACTACAAGTTCTTAATTGCAGGGGTTAACTTTATCCATCTGTGCATTCCACTGCATTCAGCTGATTAGTTAGGGTAGTTTAAATTTTGCCCTGGAA
ACAATAGGCCCCCAATATTAATGAGTTATAACAAATGTTTATTTCTCATTCATGCTTCATGTTCATCACTGTCAGCTGGGGATGCTCTGTGTCTTCTCAT
TTTGGAACTAAGCTGAAGGAGCAGCTACTGTTTCAATCTTTGCCAGTGGTCTGGCAAAAGGAAAATAGAACTGTTGAAGGTCTCAGAAAGGCAGTTAAGT
GATCTTTCCAGAAAATGATCATATCACAAAAACTGGCTACTTAAGGGAAGAAGTATCATGGGTTTCCTCTTAAGCAAAAGGCAGGCCAGGAAATATAGTC
AATATATGTGCCCAGAAGGGCAGAGTACTAGAAAAACTCAATGAACAGCTCTAATGACTATAACGCCACCACGCTATTTCTCGTATTTATAATAAATATG
TGCTGAGAGAATAAATGAATGAATCAATCAAAAACTAACAGAGCCAATATGAATAAAATGAAAATGTGAACTATATAAAGATATACAATTCTATTTAGTA
AATATATATTTATGAACAATAGAATAAAAAGAAAATTTTGAAGAAATTCTAGTCAATGAAATGTTTATAAGCTTTTAAAATCTTTTCCCTTAATAACTAC
TTGATAGCCTTCTTTATTACATTACAGAGCTATTACATAAATTTAAATTACATATTTTGCTGTAAAAATACATGCAAAAGGAATGACAATTTTGAACGTG
ATTTTGGTATCCATGTTTCTATGAGTAGAAATTATCATTTTACCATTGGTGGTTGTATTAGACAACTCAGATTGCCATAACAAAATACCACAGCCTAGCT
GGATTAACCAACACAATTTATTCTCACAGTTCTGGAGGTTAGAAGTCCAAGATCAAGGTGCCATCAGGATTGATTTCTTGTGAGGCCTTTCTTCCTGGCT
TGCTGTGTCCTCAGATGGCTCTTCATCTGTGTATGTGCAGAGAGAAAAAGATTTCTCTGGTGGCCTTCTAAAAAAAAATCAGTCTTCAGAGGCAAAGTTG
GACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGC
GGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAGGTAGGGGACACAAAATACTTTTCTATCAT
CTCAGCCAGAAACATACCTATGGAAAACATAGAACACAGCTAAACAGATAATATCTTTCACTTACATGATGGCTTTATCTTTTTTAAGGTCTATGAACAC
AACAAACTTGTTATGAATATGAGCCTTTATTAAATATTTGGATCCACTCCCTGACATTAGCAATTACAGATTACA

Expression



Full and truncated open reading frames discovered in ENST00000360093

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.