Detailed information on TCONS_00144437

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-... novel protein coding TCONS_00144437 1433 556 UTR3 Trans

Sequence

>TCONS_00144437 (1168 nt)
CGCCGCTTGACCGAAGGGGCGGGGCCTGAAGGCTGAGCGCAGTCGCGAGGCTGTAGTTGGCAGGAGAGCGGGCGGGGCCTGAAGCCCCTCTGGGCTGCCT<br />GGACGGATGAAGTCCAGGTGGAAAGCCAGTCGACGTTTCCCGGGAGCTACGACTCCAGGGACCCTCATCCGAGCTTAACCGTTGGAACAATCACAAACCC<br />AGAAACTTTTAGCTGAGTGTTATTTATAAAAAGCGCTGTTTTGACTGCTGTTGGACTTGGAAAAGCTTTGCCCACGATACTGAAGCGTAATTAGCTGCCT<br />ACTTTTCAAAATTATGTGATGACTTCATGGGAAAAGAGATTCACAAGAACCAGTAACAGGAAAGCTTAAATAAGCTTGGAAATCTTTAAACTTTCAATAT<br />CGGTAAGCAATGATCATTTTTAATCACCCAAATTCATAAGATTTGATCAAAGGAAAAATGTAGTGTTTTGGTGATATGCAGGAAGTATGAAATGCATGCT<br />ACTAATGATTGAACAGTACATCTTTGGTATGGCAGAAAAATGTAGTTTTATTTGTTTTGTTTTTGACTTAAGGTATGTCAATCTTTTTTTTTTTTTTTTT<br />TTTTTTTTTTTAATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTG<br />AACAAAGGTCTCCGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGTGTTTGTGTCCCTGGGTACTTAAAGATTAGGGAGTGGTGATGACTCTTAA<br />CGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCAC<br />AGGGTTGGGGATAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCCTAGTACAGAACAAAATGAAAAGTCTCCCAGGTCTACTTCCATCCA<br />CACAGACCCGGTAACCATCCGATTTCTCAATTCTTTCCCCACCCTTCCCGCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCATCACCAATGA<br />GCCGCTGGGCACACCTCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGC

Expression



Full and truncated open reading frames discovered in TCONS_00144437

In silico ORF/peptide predictions
>peptide 1 (74 aa)
MTLNEHAAFKHLFNKAHLAPPLIHLTLSGHSTCFREHRVGDKVTDQQDPKAEEFFLVQNKMKSLPGLLPSTQTR

>peptide 2 (58 aa)
MKCMLLMIEQYIFGMAEKCSFICFVFDLRYVNLFFFFFFFFLIDHSWVFLAEGDLAGS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT112178 (Evalue: 0)