Detailed information on TCONS_00149644

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding TCONS_00149644 575 255 UTR3 Trans
ENST00000424496 sense_intronic sense intronic TCONS_00149644 560 255 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00149644 521 254 noncoding Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00149644 518 241 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00149644 518 241 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00149644 621 251 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding TCONS_00149644 606 257 UTR5 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding TCONS_00149644 610 257 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding TCONS_00149644 610 257 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00149644 580 252 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding TCONS_00149644 532 352 UTR3 Trans
TCONS_00227594 GLI family zinc finger 3 novel protein coding TCONS_00149644 527 211 UTR3 Trans

Sequence

>TCONS_00227594 (3656 nt)
GTCTCACTCTGTTGCTGGAGTACAGTGGCACGATCTCGGCTCAGCACAACCTCTACCTCCTGGGTTCAAGCTATTCTCCTGCCTCAGTCTCCCGAGTAGC
TGGGACTACAGGCACCTGCCACCACGCCTGGCTAATGCTTTGTATTCTTAGTAGAGACGGGGTTTCACCGTGTTAACCAGGATGGTCTCAATCTCCTGAC
CTCGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACCGTGCCCGGCCAAATGAGATGAACTCTTCATATGTGTTGCCTAA
GCTGGTCTCAAACTCCTGGGTTCAAGGAATCCTACCACTTTGGCCTCTCAAAGTGCTGGGATTACAGATTCAGCGATTACATCTCTATGGGTATCTGTAA
ACCCCTGCCGACCTCTCCCTCACCTTCAGTCCCACACTTCCACCCGCCTGAGGAACTCTTCCACTGTGTTGTCTCATGCACGTTGGCCCCAAGCTTCAAT
GCTCCAAATTGACCTCATCATTCTTGCACCTCCCAGGCTTGAAACCTAGGAATTATTTTCAACTCCTACCTCTCCCTTGGCACAGGTACCCAATTAGTCA
CCATTTTAATCATCCGCTGCTGGTAATCACTGTGACATTTATCCTATTGTATCTGGCAGTGAGATGGCTGTGGCTGTCAAGCTGACACACAAATCAAGCA
GAATAAAACCCCACCCAGAAAAGGCTGGCATCAGCATGGAACTCTGTTACAAACATCAAAAGCAGTCTGTGGGCCGGGTGCATTGACTCATGCCTGTAAT
CCTAGCACTTTGGGAAGCCGAGGCAGGAGAATCACTTGAGCCAAGGAGCTCAAGACCAGCCTGAGCAACAGATTGAGACCCCATTTCTTTTATTTATTTA
TTTTAAAAAAATTTTTTAAATTTGTTTTTGAGACAGAGTATCTCTCACTGTTGCCCAGGCGGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCG
CCTCCCAGGTTCAAGCGATTCTCCTGCCTCAATCTCCAGAGTAGCTGGCATTACAGGCATGTGCCACCACGCTGGACTAATTTTTTGTATTTAGTAGAGA
CAGGGTTTCACCATCATGGTCAGGCTGGTCTCGAACTCCAGGTGTGAGCCACCATGCCTGGCTGAGACCCCATTTCTATTACACAAATAATTAGCCAGGT
GTGGTGGCTTGCACCTGTAGTCCCAGACATTCGGGAGGCTGAGGTGGGAATTTGAGGCTGCAGTGAGCCATGATCATACTACCACGCTCCAGCCTGGGCA
ACTGAACAAGGCCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGTGGTGTTATGGGGCTGACGGGAGGGGATGGGGAGATGTGATCAAGGCCAAGCTAG
AGTGAGAGCAGATCCAGTAAGTGGAGTGAGCAGAGGAATGAAGTCATGAGCCGAGAGCCCACCCAGCGGCTGAGTTCAACCTTGAAGGCTCTGGGGGAGG
AGCACCTAACATTTGTTTGGCATCTGCTAAGCAATCAAGGCCTTTTGCATATTTTATCATCTTCATCCTGGCAGCAAGACGTGGGATAGATGGTGAATCT
GACATTTGCCTGGCACCTTTGGTTTTTGTTTTCTTTTCACAAACTCTAACTCATTTGATTCCATGGTAACCCAGTGAAGTGGTCAGAGCCCTCTTTGGTG
AATGAGAAAACTGGATCCAAAAGTCCTCCATATCCTCGTTACTCAAAGTGTGGTCATCAGTATCACCTGGGAGCTTGTTAGAAACACAGATCGCCCGCTT
ATCCCAGGCTCACCCACTGGAATGTGCATTTAAACAAGAAGCCCAGGGATTCGTGGGCACATTAAAGCTGATCTATGTGACTGCTGGAGGAGTCTGGACC
AGCCTTACACAGCTAAGTCTGCCCCTGGTCAGCAACGTTTGGCACAAATGCCAAGGTTACCTGCAACTCTGAGACAAGCTTGGCCATCAGCGGGGAGTGA
GGCTGACAGAGCTGGGGACTGGGCGGTGAGAGGAGAGTGGAAAAGGGAAGTCAAGTCAAGGGTTGTTTGTGGGGATTATGCTGTGTGCTCCAGCACCCGT
CAGGTGCTCCAGGACTGATGATGCAGCTGAGGACTGGGAAGCAGGAGACCATCAAGGAAGATGGCAGCCCAGCCCATGGAGGCAAGCAAAATGGAGTGGC
TGAAGAGTTAGTGCTGGAGGAGGCACAGTCCCCTGGGAGTGGAGGGTCTTCCTGAGTGAGAGAGAAGGCAGGAGGAGGTGAGTAGGCCTGGGATGTGGAG
GGCCCTGCACACCTGGCTGGGGAGTGCAGGCTTGATCTGGGGTCAGTGGAAAGTCTACGCTGGAGAGCTGTCCTGTGCCTCTTCCTCCACCCTGTTTCCC
TCACCGGCGTCTCCTCATGGAAACATCTGTCTTGATAATCTTGACAGTCTCCTCTGGGACATCATAGCTCATAGACCTGCTCCCAGCCAATTCTCAACAA
CCAGAATTGAGCCCAGCCTGTCCTTTCCCTCTTCCTGAGCCTCCAAAGAGCCACCACTTTTCACCCAGTCACTGGCCACTCACCTTGGGAGTGATCTCAG
ACTCCTCCTGGTCCTGTAACCTCCACACTGCATTGTTCTTTGAGTTATCTCTGCTAAAAACCCTTCATCATCCCTAAGCAGCCTCCCCACCTGCAGTGTC
TCCAGCCCACTCTCAGGCTTCCTTTGTTGGGTCCAAATTCCTCAGCCTGAGCTATTGTTCATAGCTCTCTACACCTTCCTCCTACCTTATCTTACCTGTG
ACTGCTCCCAGGGTCCCATTTCCCCCTCCTCCCCACCCTGCCTCCACTCCTGCCCTTTGATCTCCTTGTCCCTTCCTGCTTGTCTGTCCCCTGCTGGTGA
GAGGTGAAGCCAGCTGGACTTCCTGGGTTGAGTGGGGGCTTGGAGAACTCTTCTGTCTTATAAGAGGATTGTAAAATGCACCAGTCAGCACTCTGTAGCT
AGGTTTGTAAAACGCACCAATCAGCACTCTGTGGCTAGCTAGAGGTTTGTAAAATGCACTAATCAGTGCTCTGTAAAAACACACCAGTCAGCACTCTGTG
GCTAGCTAGAGGTTTGTAAAATGGACCAATCAGCAGGACATGGGCAGGGACAAGTAAGGGAATAAAAGCTGGTCACCCCCAGCCTGGAGCGGCAACCCGC
TCAGGTCCCCTTCCACGCTGTGGAAGCTTTGTTCTTTTGCTCTTCACAATAAATCTTGCTGCTGCTCATTCTTTGGGTCCGTGCCACCTTTAAGAGCTGT
AACACTCACAGTGAAGGTCCACGGCTTCATTATTGAAATCAGCGAGACCACGAACCCATCAGAAGGAACCAACTCCAGACACACTGGGAGAGACCAACCC
TCTTTGTTTCCTCTGGCCAAAGCCTGCCTGTCTTTCTATGCCCATATACATGCCTTTACTTCCTTCCTGTTGGGATTAGAAGATTAGAACCCAGGATTTG
TGACTAGTGGCCAGGTTATAATTTTTTTTTTTTTTTTGAAACTGAGTCTTGCTCTGTCATCCAGGCGGGAGTGCAGTGGCATGAACATGGCTCACTGCAG
CCTCGACTTCCTGGGGTCAAGTGATCCTCCTGCTTCAGCATTCCATGTAGCTGGGAC

Expression



Full and truncated open reading frames discovered in TCONS_00227594

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.