Detailed information on TCONS_00150911

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihy... processed transcript TCONS_00150911 507 288 noncoding Trans
ENST00000513143 podoplanin protein coding TCONS_00150911 527 288 UTR5 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00150911 524 287 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-recept... novel protein coding TCONS_00150911 510 254 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-recept... novel protein coding TCONS_00150911 510 254 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element bind... novel protein coding TCONS_00150911 657 283 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element bind... novel protein coding TCONS_00150911 657 283 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR3 Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding TCONS_00150911 642 290 UTR5 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding TCONS_00150911 618 289 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding TCONS_00150911 631 280 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding TCONS_00150911 631 280 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00150911 579 274 UTR3 Trans
TCONS_00199319 sorting nexin 24 novel noncoding TCONS_00150911 618 281 noncoding Trans
TCONS_00203985 family with sequence similarity 169, mem... novel protein coding TCONS_00150911 601 289 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, mem... novel noncoding TCONS_00150911 601 289 noncoding Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 li... novel noncoding TCONS_00150911 601 289 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 li... novel protein coding TCONS_00150911 601 289 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00150911 639 288 UTR5 Trans

Sequence

>TCONS_00150911 (7144 nt)
GGAGTGCGCATGCGGCCGAGTGCGGGACTGGGGCTCCTGGCTGTGGGTGTGGTACTGAGGCTTCAGCGGGTGCCGCCCGCCTAGAGGGAGTGGAGCGGTG<br />AGCACGTCAGGGGTGGGGGGCGCAGGTCAAGCTTTCACCAGTTTTTAATTCTTTGATGGGGTAAATTTGAGCAATTTTCTCGACTTGTCGACATTCGTTA<br />TTAACTGAGCAGGAATCAGGAGAGGAACCCGGTCCTCTCCACACAGCCCAGCAGAGAGCCTACGACTAGATTTGCATCTTTACGTCCTGCGCGGAGGCTG<br />CTACACACATGCAGAAGTCATGCTGGTGGCCTGGACATTGAAGGGAGAGAAGTGGATTTGGGAGACATTTAGGAGATGGCACCGAAAGCGAAGGAAGCTC<br />CTGCTCCTCCTAAAGCCGAAGCCAAAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCGCAGCCACACGCAAAAAAGAGGATCCGCATG<br />TCACTCACCTTCAGGCGGCCCAAGACACTGTGACTCCGGAGGCAGCCCAGATAGCCTCAGAAGAGCACCCCCAGGAGAAACAAGCTTGGCCACTATGCTA<br />TCATCAAGTTTCCGCTGACCACTGAGTCGGCCGTGAAGAAGATAGAAGAAAACAACACGCTTGTGTTCACTGTGGATGTTAAAGCCAACAAGCACCAGAT<br />CAGACAGGCTGTGAAGAAGCTCTATGACAGTGATGTGGCCAAGGTCACCACCCTGATTTGTCCTGATAAAGAGAAGAAGGCATATGTTCGACTTGCTCCT<br />GATTATGATGCTTTCGATGTTGTAACAAAATTGGGATCACCTAAACTGAGTCCAGCTGGCTAACTCTAAATATATGTGTATCTTTTCAGCATAAAAAAAT<br />AATGTTTTTCATAAGAATGACAACTTAATTAGAATCAAATCTATAAGCTTTAAGATTTTACGTTTCTAGTAAGTATAATATTAGCTTATTTGACTAGAAC<br />TCAAGCAGAATAGGAATTTATGCTTGTTTTATATTCAATAATGATAATTTTGAAGATATAGTTGTTTTATTACACCAAAAATACTATATTAATCTTATTT<br />AACTAAGTTTTATCCAAATCATGTTAACTTAAGAAACATTTGATCAGTTCCTATATTTCTAGGAGTTTGGTGAATATTTATTTATAAATGCTTATTTTTT<br />TCCAAGCCAAGTTAGAATAGAGCACTTTTAGAGGATTTCATAAATGAATTTTGCAATGCTCTCTGGAGTTAAGAAAATATCACATATACATAACATACAT<br />TATTAGATACACAAACACAAATAGAGATTTCATAGCTTTCATCCTGAAATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTCAGACATCT<br />ACTTGATCGGATTGAGAGACACACATAGTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGACT<br />GGATTAAGAGACACACATAGCTGGTCAAACATGATTTCAGCCATGAATCAGCCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGAGTGGATTAA<br />GAGACACACATAGCTGGTCAAACACAATTTCAGCCATGAATCAGGCATAAATATTTTGACGGTTAATTTTAGACATCTACTTGATCGGATTGAGAGACAC<br />ACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGAGTGGATTGAGAGACACACATAGC<br />TGGTCAAACACAATTTCAGCCATGAATCAGGCATAAATATTCTGACGGTTAATTTTAGACATCTACTTGACTGGATTGAGAGACACACATAGCTGGTCAA<br />ACACGATTTCAGCCATGAATCAGGCATAAATATTCTGACGGTTAACTTTAGACATCTACTTGACTGGATTGAGAGACACACATAGCTGGTCAAACACGAT<br />TTCAGCCATGAATCAGGCATAAATATTCTGACGGTTAACTTTAGGCATCTACTTGATTGGATTGAGAGACACACATAGCTGGTCAAACACGATTTCAGCC<br />ATGAATCAGGCATAAATATTCTGATGGTTAATTGTAGACATCTACTTGACTGGATTGAAAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATC<br />AGGCATAAATATTCTGATGGTTAATTGTAGACATCTACTTGACTGGATTGAAAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATA<br />AATATTCTGATGGTTAATTGTAGACGTCTACTTGACTGGATTGAGAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTC<br />TGATGGTTAATTGTAGACGTCTACTTGACTGGATTGAGAGACACACACAGCTGGTCAAACACGATTTCTGGGCATATCTATGAGGGCGTTTCTGGAAGAC<br />ACTGAGATAACCATGACCCAATGTGGATGGGCACTGATATGGTTTGGCTGTGTCCCCACCCAGATCTCATCTTGAATTGTAGTTCCTGTAATACCTACAT<br />GTCGTGGGAGGGACCCAATGGGAGGTGACTGAATCGTGGTGGTGGTTACTGCCATGATGTTCTCATGACAGTGAGTGAGTTCTCATGATCTGATGGTTTT<br />ATAAGGGGCTTTTCCCCTTTGGCTCAGCACTTCTTGTTGCTGCCATGTGAAGAGGGATAGCTTTGCTTCCCCTTCTGCCATGATTGTGAGGCCCCTGCAG<br />CCATGTGGAACTGTCAGCCCATTAAACCCCTTTGTTCTTTATAAATTGCTCAGACTCAGGTATTTCTTCATAGCTGTATAAAAATGGATGAATACAGGCA<br />GCATCCAATTGGTTGAGAGCCCAGATAGAATAACAAGGAAGAGGAAAGGTGAATTATCTCCTTCTGAAATGGAAACATCCTTCTTCTCCTGCCCTTGACA<br />TCAGAACTTCAGGGTCTCAGACCTTTGGCCTCACAATCAGAGTTACACCATTGGCTTCCCTGATTCTGAGTCCTTTGTATCTGGAGTGAGCCATGCTACC<br />AGCTTTCCTGGTTCTCCAACTTGGAGACAGGCTATTGTGGAACTTCTCAGCCTCCATAATTATGTGAACCAGTTCCCCTAATGAATCTTCTCTCATCTGT<br />CTACATATATCCTATTGATTCTGCCTTTCTGGAGACCCCTGACTAATGTGATTACAATAACTACAAAATTCACTAGTTTATATAGAAGACTTGGTTTTTG<br />TCTTTGCCCCATTTTATATTTGTATTATAACTATGTATCTGGAAAATGGAACAAGTTTTTTCTTCTTCATATGAGGGCTAAGGCTTTTTTCTCACCAATA<br />TTTTTGGAGATTTTAAAGATTTTCTTTTTTTTGACATAGAATCTTATGGAGGCTGAGAAATAATTTTTTTTCTATTTTATTCTTCAGCCCCAGGTGTTTG<br />CTTTTGCAGATTCTTGAGCACATTGAGAGCCTCCAAGGCATGGAGTGGGGTGCCTGAAGTTTCAGTGATTATAGGGAGTTGAGAGACTCAACTGGGAAAG<br />GAAAGGTCTAAAAGGAGGCAATTTGGAAGATAAAAATTTTCTCAAAGGAGCCATTAAAGTTGTAAATAATTCTTAGTAAAGTCATGCAAACAGGAAAAGA<br />AGTAGAATTAGTTCCATATTGGTGGAACACATAGTCAGCAGAGGTTTGAGAAGGGAGAATTCAGTGAACTGAGAAGTTCCCATGAAAGCAGCAAGATCAA<br />GATCACAGAGACCCCTTGAAACAAAAAGCCAGGAATAACTTCCAACCCAAGAGGAGAACAGAGAGGCCTCAAAACCAAAGCTAGGATAAGAAACTTGTAG<br />CCCAAGAGTTATCTTCCAGACAAAGAAGCCTGAGATTCCAACGCAGCTTCAGAGAGTGCTCACTCAAAATGTTACTGAAACTGTAGGCTTTTTAATGACT<br />TAGCCATGCCTGCAAAAGGCATTCCCTAAGGTGGCACAGAAGACGGAGCCCCCATATCCAAAGATAGCCAAGGAGAAAGAAAGACCCCTGTTGCCATAGC<br />CAGTGGGCAAAGGCAACAGAAAAGGAGACAAGGGTCCTAATGGGATGAGATCCTTTCAGATTTAGGCTTATACAAACTCCTGAGAACTGGCAGGTTGACA<br />GCCATAAATGGGGTACCAAACTTTCTACTCATTGGATTACAAGTTCTCAGGCATCCAGAATGATTAACAAAATGACAATTTCTAGGGCTTCTGTGGGAGA<br />GTATGGAAAGGTCTTTTTGAACCTTTTAATGCTGTCAACGGAAAAATGATGAGGTTCATAAATTTGGAAAGGAGACATTTCTTCATTTCTATGCTTATTT<br />TTATTTTTTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTTGGTTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGA<br />TTCTCCTGCCTCAGCCTCCTGATTAGCTGGGATTACAGATGCCCACCACCACACCTGGCTAATTTTTTGCAGTTTTGGTAGCGACAGGGTTTCATCATGT<br />TGGCCAGGCTGGTCTGAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCCACCCAGTGAGAGA<br />TTTATTATCTATAAAGGGTTGTAGCCTGCAGGGTTGTCCTTCTGACAGGCTGGGAAGCATAGCCTCCAGCCAGAAGCCAGAAACAGACGCTTCAAGGAGG<br />AGGTAAAGGAAATAGCAATTTATGCTGAGTGGAATGGCCAAATAGATTTATTTAATAAGCTCTAGGAGGAGTCATGAATATTTATGGAAGGAGAAATGCA<br />TGCACGCACAATTGAGTTTCTTGCTTCTTCATGGGTCCCATGTACAAAAAATGGCAGTGTTAGCATGATCCCAGGGTGGAGTTTTCAGCCCTCTGACATT<br />AAAAGGTGAAGCAGAGGACATGAAAACTCGCTCTGTGCATCCTCTGTACGCTGGCCAGAACCTCTCCATCGTGGGTGGTCTCTTATCAGGCAAGAAAGGA<br />GAGGTTGATATCAGTGGTGGAGGCTTTGAAAGGGCTGGTTTCTGTTAAATCCTTAGGGAAGAAAGCCTCATCATGGTTAGCAAAGGAGGGGGTATAACGA<br />TGTGTATCTTAACCCCATCATCCCATCCTAGCAAAGCTGAGAACTCAGTTTTGAAAGTTACTCTGGGGTCCCCTCAGCCAAGAGTGGGTCTGTTCAGTCA<br />GTTGGGAGCTTAGAATTTCATTTTCATTTATCAATGCTAATGCGAAAGAGTACGCTGTCTTCATGGCAGCTGAATTTGCAAGAAACTCCTTGGATGGGGT<br />TAATGGCAGCTGTATTTTTCTGGGAGCTCTGCTTTAATTGGATAAAGTAAGTTCTGGTAAGATTTCTTCATCTTCAGTATCTCAAATGTTTTCATTTAAA<br />TAATCTTTATAACAACTTTTGATGTCTGAGTGGATTCCCACACAGTCATCTATTGTAAGACTTTCTGATTCCTTTTTTTTCCTTTGGTCATTATGAATAG<br />GGCTTCTGTAAATAACTGCATGGTAGCTTTTGATGGGAAATAACATCAAAGTAGTTGTCAAAATACTTAGGAATGTTATTTTTGGATTGTAAGGTGAGAC<br />TTGTTTAGCTTTGGAAAAAAATGCACAACTTGTAATAGGGGAGGAAAAATAATTTTCTGTTTTTGGAATTCTTAGATGGAACGCTCTGTAAAAACTGACA<br />GATTAAAATGAGAAAAACAGAAAAGTTTAAAAACATGTATATCTTATGGTTACATGGGAGATACTCAGGGAAAAATGAGTAAATCTCCAACAGGTGGCTT<br />TCAATTCAAGCATAAATACTATCTTCAACTTAAAGAAAGAAGATTTGAGGTGCAGTAGTGGGGAGCTAACCAGCAAAAGCACATTAGACAAGGGTAAGGT<br />GCGTTATACAGACTTAAGTCCACGCATTCTCCATTGATAAGACTCTTCAGTGATTTAGTTATCCTTCTCTTCTTGGCGTCGAGAGAGGTAGCTTTTAAAT<br />GGTGATTTCCTTTATAGATGTAAATTTTCCTTACACAAGTAACTTCTCTATTTTCACAACTTCCTTTGTTAGCATTTTTTTTCAAAATAATTAGCTTGGA<br />ATAATTCTTAAGCCAAAGGGACATATTTTGGGGTTGCATATTCTGGTTTCCTACCATTATATTTCGGGGTGGCATAGTTTGGTCTTATACACTGTGTTCC<br />ACTGGCAATGAAAAGAGTTCTTGGTTTTCCTCCAGCAATTTGTCATTTGTTAAAGAGCTTAGCAGTTCTAAGAGATATAGACCAGCTGTGCTATCTTTTT<br />GTGGTTTTCAGTTCTCTAGTATGTTGAGCATCTTTTTGTAAGTGTACTTGCCATCTGTAGATCTTCTTTGGTGAAGTGTCTGTTCAGATCTGTGTGCATT<br />TTTAATTGGGTTGTTTAACTTATTGTTTAGTTTTAACAATTTTTTATATATTTTGAATACAAATTCTCAGATCTGTATTTTGCAAATATTTTCTTCAACA<br />TGTGGCTTGTCTTTTTGTTCTCTTAACAAGGTCTCTTCCAGAGTATAAACTGTAAATATTAAGAAATCCACATTGTCATTTCTTCTGTGTATATCAACCT<br />TCTGTGTCATTTGTTAAAATTCATTACGAAACGCAAAGGCACATAGCTTTTCCTCTATAGTTTCTTCTAGAAATTGTATAGTTTTGCATTTTTAGTGTAA<br />GGATGATTTTGAGTGATTATTTGTGTAAGTTGTAAAGTTTTCATCTACATGCATATCATTTCTTATGGTTTCCAATTAATCATTCCCTCACTATTTTTGG<br />GAAAGACACAGGATAGTGGGCTCTGTTAGAGTAGATAGCTAGCTAGACATGAACAGGAGGGGGAGCTCCTGGAAAAGGGAAAGTCTGTGAAGGCTCACCT<br />GGAGGGACCACCAAAAATGCACATATTAGTAGCATCTCTAGTGCTGGAGTGGATGGGCACTTGTCAATTGTGGTTAGGAGGGAGAAGAGGTACCTACGCA<br />GAAACACCCTAGAACTTCTCTTAAGATGCCCCAATCGGATGGGC

Expression



Full and truncated open reading frames discovered in TCONS_00150911

In silico ORF/peptide predictions
>peptide 1 (80 aa)
MAPKAKEAPAPPKAEAKAKALKAKKAVLKGVRSHTQKRGSACHSPSGGPRHCDSGGSPDSLRRAPPGETSLATMLSSSFR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT124573 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P62752|RL23A_RAT (Evalue: 2.0E-54)