Detailed information on TCONS_00150911

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) processed transcript TCONS_00150911 507 288 noncoding Trans
ENST00000513143 podoplanin protein coding TCONS_00150911 527 288 UTR5 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00150911 524 287 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00150911 510 254 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00150911 510 254 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00150911 657 283 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00150911 657 283 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00150911 613 283 UTR3 Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding TCONS_00150911 642 290 UTR5 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding TCONS_00150911 618 289 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding TCONS_00150911 631 280 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding TCONS_00150911 631 280 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00150911 579 274 UTR3 Trans
TCONS_00199319 sorting nexin 24 novel noncoding TCONS_00150911 618 281 noncoding Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00150911 601 289 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding TCONS_00150911 601 289 noncoding Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding TCONS_00150911 601 289 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00150911 601 289 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00150911 639 288 UTR5 Trans

Sequence

>TCONS_00252827 (7143 nt)
GGAGTGCGCATGCGGCCGAGTGCGGGACTGGGGCTCCTGGCTGTGGGTGTGGTACTGAGGCTTCAGCGGGTGCCGCCCGCCTAGAGGGAGTGGAGCGGTG
AGCACGTCAGGGGTGGGGGGCGCAGGTCAAGCTTTCACCAGTTTTTAATTCTTTGATGGGGTAAATTTGAGCAATTTTCTCGACTTGTCGACATTCGTTA
TTAACTGAGCAGGAATCAGGAGAGGAACCCGGTCCTCTCCACACAGCCCAGCAGAGAGCCTACGACTAGATTTGCATCTTTACGTCCTGCGCGGAGGCTG
CTACACACATGCAGAAGTCATGCTGGTGGCCTGGACATTGAAGGGAGAGAAGTGGATTTGGGAGACATTTAGGAGATGGCACCGAAAGCGAAGGAAGCTC
CTGCTCCTCCTAAAGCCGAAGCCAAAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCGCAGCCACACGCAAAAAAGAGGATCCGCATG
TCACTCACCTTCAGGCGGCCCAAGACACTGTGACTCCGGAGGCAGCCCAGATAGCCTCAGAAGAGCACCCCCAGGAGAAACAAGCTTGGCCACTATGCTA
TCATCAAGTTTCCGCTGACCACTGAGTCGGCCGTGAAGAAGATAGAAGAAAACAACACGCTTGTGTTCACTGTGGATGTTAAAGCCAACAAGCACCAGAT
CAGACAGGCTGTGAAGAAGCTCTATGACAGTGATGTGGCCAAGGTCACCACCCTGATTTGTCCTGATAAAGAGAAGAAGGCATATGTTCGACTTGCTCCT
GATTATGATGCTTTCGATGTTGTAACAAAATTGGGATCACCTAAACTGAGTCCAGCTGGCTAACTCTAAATATATGTGTATCTTTTCAGCATAAAAAAAT
AATGTTTTTCATAAGAATGACAACTTAATTAGAATCAAATCTATAAGCTTTAAGATTTTACGTTTCTAGTAAGTATAATATTAGCTTATTTGACTAGAAC
TCAAGCAGAATAGGAATTTATGCTTGTTTTATATTCAATAATGATAATTTTGAAGATATAGTTGTTTTATTACACCAAAAATACTATATTAATCTTATTT
AACTAAGTTTTATCCAAATCATGTTAACTTAAGAAACATTTGATCAGTTCCTATATTTCTAGGAGTTTGGTGAATATTTATTTATAAATGCTTATTTTTT
TCCAAGCCAAGTTAGAATAGAGCACTTTTAGAGGATTTCATAAATGAATTTTGCAATGCTCTCTGGAGTTAAGAAAATATCACATATACATAACATACAT
TATTAGATACACAAACACAAATAGAGATTTCATAGCTTTCATCCTGAAATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTCAGACATCT
ACTTGATCGGATTGAGAGACACACATAGTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGACT
GGATTAAGAGACACACATAGCTGGTCAAACATGATTTCAGCCATGAATCAGCCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGAGTGGATTAA
GAGACACACATAGCTGGTCAAACACAATTTCAGCCATGAATCAGGCATAAATATTTTGACGGTTAATTTTAGACATCTACTTGATCGGATTGAGAGACAC
ACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGAGTGGATTGAGAGACACACATAGC
TGGTCAAACACAATTTCAGCCATGAATCAGGCATAAATATTCTGACGGTTAATTTTAGACATCTACTTGACTGGATTGAGAGACACACATAGCTGGTCAA
ACACGATTTCAGCCATGAATCAGGCATAAATATTCTGACGGTTAACTTTAGACATCTACTTGACTGGATTGAGAGACACACATAGCTGGTCAAACACGAT
TTCAGCCATGAATCAGGCATAAATATTCTGACGGTTAACTTTAGGCATCTACTTGATTGGATTGAGAGACACACATAGCTGGTCAAACACGATTTCAGCC
ATGAATCAGGCATAAATATTCTGATGGTTAATTGTAGACATCTACTTGACTGGATTGAAAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATC
AGGCATAAATATTCTGATGGTTAATTGTAGACATCTACTTGACTGGATTGAAAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATA
AATATTCTGATGGTTAATTGTAGACGTCTACTTGACTGGATTGAGAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTC
TGATGGTTAATTGTAGACGTCTACTTGACTGGATTGAGAGACACACACAGCTGGTCAAACACGATTTCTGGGCATATCTATGAGGGCGTTTCTGGAAGAC
ACTGAGATAACCATGACCCAATGTGGATGGGCACTGATATGGTTTGGCTGTGTCCCCACCCAGATCTCATCTTGAATTGTAGTTCCTGTAATACCTACAT
GTCGTGGGAGGGACCCAATGGGAGGTGACTGAATCGTGGTGGTGGTTACTGCCATGATGTTCTCATGACAGTGAGTGAGTTCTCATGATCTGATGGTTTT
ATAAGGGGCTTTTCCCCTTTGGCTCAGCACTTCTTGTTGCTGCCATGTGAAGAGGGATAGCTTTGCTTCCCCTTCTGCCATGATTGTGAGGCCCCTGCAG
CCATGTGGAACTGTCAGCCCATTAAACCCCTTTGTTCTTTATAAATTGCTCAGACTCAGGTATTTCTTCATAGCTGTATAAAAATGGATGAATACAGGCA
GCATCCAATTGGTTGAGAGCCCAGATAGAATAACAAGGAAGAGGAAAGGTGAATTATCTCCTTCTGAAATGGAAACATCCTTCTTCTCCTGCCCTTGACA
TCAGAACTTCAGGGTCTCAGACCTTTGGCCTCACAATCAGAGTTACACCATTGGCTTCCCTGATTCTGAGTCCTTTGTATCTGGAGTGAGCCATGCTACC
AGCTTTCCTGGTTCTCCAACTTGGAGACAGGCTATTGTGGAACTTCTCAGCCTCCATAATTATGTGAACCAGTTCCCCTAATGAATCTTCTCTCATCTGT
CTACATATATCCTATTGATTCTGCCTTTCTGGAGACCCCTGACTAATGTGATTACAATAACTACAAAATTCACTAGTTTATATAGAAGACTTGGTTTTTG
TCTTTGCCCCATTTTATATTTGTATTATAACTATGTATCTGGAAAATGGAACAAGTTTTTTCTTCTTCATATGAGGGCTAAGGCTTTTTTCTCACCAATA
TTTTTGGAGATTTTAAAGATTTTCTTTTTTTTGACATAGAATCTTATGGAGGCTGAGAAATAATTTTTTTTCTATTTTATTCTTCAGCCCCAGGTGTTTG
CTTTTGCAGATTCTTGAGCACATTGAGAGCCTCCAAGGCATGGAGTGGGGTGCCTGAAGTTTCAGTGATTATAGGGAGTTGAGAGACTCAACTGGGAAAG
GAAAGGTCTAAAAGGAGGCAATTTGGAAGATAAAAATTTTCTCAAAGGAGCCATTAAAGTTGTAAATAATTCTTAGTAAAGTCATGCAAACAGGAAAAGA
AGTAGAATTAGTTCCATATTGGTGGAACACATAGTCAGCAGAGGTTTGAGAAGGGAGAATTCAGTGAACTGAGAAGTTCCCATGAAAGCAGCAAGATCAA
GATCACAGAGACCCCTTGAAACAAAAAGCCAGGAATAACTTCCAACCCAAGAGGAGAACAGAGAGGCCTCAAAACCAAAGCTAGGATAAGAAACTTGTAG
CCCAAGAGTTATCTTCCAGACAAAGAAGCCTGAGATTCCAACGCAGCTTCAGAGAGTGCTCACTCAAAATGTTACTGAAACTGTAGGCTTTTTAATGACT
TAGCCATGCCTGCAAAAGGCATTCCCTAAGGTGGCACAGAAGACGGAGCCCCCATATCCAAAGATAGCCAAGGAGAAAGAAAGACCCCTGTTGCCATAGC
CAGTGGGCAAAGGCAACAGAAAAGGAGACAAGGGTCCTAATGGGATGAGATCCTTTCAGATTTAGGCTTATACAAACTCCTGAGAACTGGCAGGTTGACA
GCCATAAATGGGGTACCAAACTTTCTACTCATTGGATTACAAGTTCTCAGGCATCCAGAATGATTAACAAAATGACAATTTCTAGGGCTTCTGTGGGAGA
GTATGGAAAGGTCTTTTTGAACCTTTTAATGCTGTCAACGGAAAAATGATGAGGTTCATAAATTTGGAAAGGAGACATTTCTTCATTTCTATGCTTATTT
TTATTTTTTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTTGGTTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGA
TTCTCCTGCCTCAGCCTCCTGATTAGCTGGGATTACAGATGCCCACCACCACACCTGGCTAATTTTTTGCAGTTTTGGTAGCGACAGGGTTTCATCATGT
TGGCCAGGCTGGTCTGAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCCACCCAGTGAGAGA
TTTATTATCTATAAAGGGTTGTAGCCTGCAGGGTTGTCCTTCTGACAGGCTGGGAAGCATAGCCTCCAGCCAGAAGCCAGAAACAGACGCTTCAAGGAGG
AGGTAAAGGAAATAGCAATTTATGCTGAGTGGAATGGCCAAATAGATTTATTTAATAAGCTCTAGGAGGAGTCATGAATATTTATGGAAGGAGAAATGCA
TGCACGCACAATTGAGTTTCTTGCTTCTTCATGGGTCCCATGTACAAAAAATGGCAGTGTTAGCATGATCCCAGGGTGGAGTTTTCAGCCCTCTGACATT
AAAAGGTGAAGCAGAGGACATGAAAACTCGCTCTGTGCATCCTCTGTACGCTGGCCAGAACCTCTCCATCGTGGGTGGTCTCTTATCAGGCAAGAAAGGA
GAGGTTGATATCAGTGGTGGAGGCTTTGAAAGGGCTGGTTTCTGTTAAATCCTTAGGGAAGAAAGCCTCATCATGGTTAGCAAAGGAGGGGGTATAACGA
TGTGTATCTTAACCCCATCATCCCATCCTAGCAAAGCTGAGAACTCAGTTTTGAAAGTTACTCTGGGGTCCCCTCAGCCAAGAGTGGGTCTGTTCAGTCA
GTTGGGAGCTTAGAATTTCATTTTCATTTATCAATGCTAATGCGAAAGAGTACGCTGTCTTCATGGCAGCTGAATTTGCAAGAAACTCCTTGGATGGGGT
TAATGGCAGCTGTATTTTTCTGGGAGCTCTGCTTTAATTGGATAAAGTAAGTTCTGGTAAGATTTCTTCATCTTCAGTATCTCAAATGTTTTCATTTAAA
TAATCTTTATAACAACTTTTGATGTCTGAGTGGATTCCCACACAGTCATCTATTGTAAGACTTTCTGATTCCTTTTTTTTCCTTTGGTCATTATGAATAG
GGCTTCTGTAAATAACTGCATGGTAGCTTTTGATGGGAAATAACATCAAAGTAGTTGTCAAAATACTTAGGAATGTTATTTTTGGATTGTAAGGTGAGAC
TTGTTTAGCTTTGGAAAAAAATGCACAACTTGTAATAGGGGAGGAAAAATAATTTTCTGTTTTTGGAATTCTTAGATGGAACGCTCTGTAAAAACTGACA
GATTAAAATGAGAAAAACAGAAAAGTTTAAAAACATGTATATCTTATGGTTACATGGGAGATACTCAGGGAAAAATGAGTAAATCTCCAACAGGTGGCTT
TCAATTCAAGCATAAATACTATCTTCAACTTAAAGAAAGAAGATTTGAGGTGCAGTAGTGGGGAGCTAACCAGCAAAAGCACATTAGACAAGGGTAAGGT
GCGTTATACAGACTTAAGTCCACGCATTCTCCATTGATAAGACTCTTCAGTGATTTAGTTATCCTTCTCTTCTTGGCGTCGAGAGAGGTAGCTTTTAAAT
GGTGATTTCCTTTATAGATGTAAATTTTCCTTACACAAGTAACTTCTCTATTTTCACAACTTCCTTTGTTAGCATTTTTTTTCAAAATAATTAGCTTGGA
ATAATTCTTAAGCCAAAGGGACATATTTTGGGGTTGCATATTCTGGTTTCCTACCATTATATTTCGGGGTGGCATAGTTTGGTCTTATACACTGTGTTCC
ACTGGCAATGAAAAGAGTTCTTGGTTTTCCTCCAGCAATTTGTCATTTGTTAAAGAGCTTAGCAGTTCTAAGAGATATAGACCAGCTGTGCTATCTTTTT
GTGGTTTTCAGTTCTCTAGTATGTTGAGCATCTTTTTGTAAGTGTACTTGCCATCTGTAGATCTTCTTTGGTGAAGTGTCTGTTCAGATCTGTGTGCATT
TTTAATTGGGTTGTTTAACTTATTGTTTAGTTTTAACAATTTTTTATATATTTTGAATACAAATTCTCAGATCTGTATTTTGCAAATATTTTCTTCAACA
TGTGGCTTGTCTTTTTGTTCTCTTAACAAGGTCTCTTCCAGAGTATAAACTGTAAATATTAAGAAATCCACATTGTCATTTCTTCTGTGTATATCAACCT
TCTGTGTCATTTGTTAAAATTCATTACGAAACGCAAAGGCACATAGCTTTTCCTCTATAGTTTCTTCTAGAAATTGTATAGTTTTGCATTTTTAGTGTAA
GGATGATTTTGAGTGATTATTTGTGTAAGTTGTAAAGTTTTCATCTACATGCATATCATTTCTTATGGTTTCCAATTAATCATTCCCTCACTATTTTTGG
GAAAGACACAGGATAGTGGGCTCTGTTAGAGTAGATAGCTAGCTAGACATGAACAGGAGGGGGAGCTCCTGGAAAAGGGAAAGTCTGTGAAGGCTCACCT
GGAGGGACCACCAAAAATGCACATATTAGTAGCATCTCTAGTGCTGGAGTGGATGGGCACTTGTCAATTGTGGTTAGGAGGGAGAAGAGGTACCTACGCA
GAAACACCCTAGAACTTCTCTTAAGATGCCCCAATCGGATGGGC

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.