Detailed information on TCONS_00157903

lncRNA-RNA interactions

Number of interactions: 35

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000327473 tumor necrosis factor, alpha-induced protein 8-like 1 protein coding TCONS_00157903 630 300 UTR3 Trans
ENST00000353047 cathepsin B protein coding TCONS_00157903 601 281 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding TCONS_00157903 535 250 UTR3 Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay TCONS_00157903 538 291 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00157903 644 302 noncoding Trans
ENST00000513269 NEDD4 binding protein 2 protein coding TCONS_00157903 502 288 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding TCONS_00157903 612 305 UTR5 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding TCONS_00157903 535 250 UTR3 Trans
TCONS_00027924 ADARB2 antisense RNA 1 novel protein coding TCONS_00157903 605 307 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00157903 617 284 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00157903 602 285 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding TCONS_00157903 539 299 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding TCONS_00157903 539 299 UTR3 Trans
TCONS_00090941 nucleoporin 93kDa novel protein coding TCONS_00157903 539 299 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00157903 543 283 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00157903 563 275 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding TCONS_00157903 601 308 UTR3 Trans
TCONS_00174266 GRAM domain containing 1C novel protein coding TCONS_00157903 600 300 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00157903 616 287 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00157903 602 293 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00157903 617 286 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00157903 644 284 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding TCONS_00157903 605 287 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding TCONS_00157903 645 287 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding TCONS_00157903 602 296 noncoding Trans
TCONS_00219453 WD repeat domain 27 novel protein coding TCONS_00157903 614 302 UTR3 Trans
TCONS_00230811 kielin/chordin-like protein novel protein coding TCONS_00157903 601 287 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding TCONS_00157903 626 283 UTR5 Trans
TCONS_00237101 cathepsin B novel protein coding TCONS_00157903 601 281 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding TCONS_00157903 601 281 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00157903 631 284 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00157903 631 284 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding TCONS_00157903 631 293 UTR5 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding TCONS_00157903 597 283 UTR3 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00157903 651 292 UTR3 Trans

Sequence

>TCONS_00253055 (4931 nt)
ACTGTGTGTGGAGACTCAGGCTCACCGGCAAACCTCTTCCGGTTCCGGTCAGGGTGCTGCCTCCCTATCCACTGGGAGTCCTTTTGCGTTTCAGATGCTC
CCAGGCTCTCCCGCAGTTTAAAGACTTAACTCAGCGGCTTTCAGGGCCTGTGGTTGAGGGACTCCGAAAGAACTGTTGCTGGTGGACCGGTTCAGGGTCT
TGACTTCGCCACACAAAAGAACTTGAGAGCACGTCCAAAGTAAAGCTAAGACCTCTAGTACAGTGTTCAATGGAACTGGTGAGAAAAGACGTCCTTGCTG
TGTTCCTGATATGAAGAGGAAAGCAGTCCTTCTCCATTAAATGCTGACAACATGAGCCTCCCGTGGTCGGAACGGGCTTGTGAAGGCGGTGCTGGGGTGC
ACCAGGGCAGCAGCTACAGGTGAGTAGGCGGGGACATTTGAAAGGGGCTAATTTTCTCGTGGTCCTTTATAGGGGGATGTTTGTATGTTAAGACAGCTCT
TTCTTCCCTATACAACTCTGTAGCTGGGGTTGAGTGCATGTAAACTCAGCTAACAAAATCTTCTTGCATTCGGTTTGAGGTCTATTGCTCTGCAGAATCC
CCAGGCCTGCCACTTTCCTGGCACATCTTCTCAGCCCTTAGGCTCAGGCTGCAGTCTTTGATTAGTGGTGCATGTATGTGCGACGGGGACAGTTGTCACT
GAAATTACAGACAGCTGAATGGTGATTTGAATTGCATGAGCATTAAGGCCTTTCTTAAGAGAGATATGCAAAACCCATGGTTTGATTCTCTTGAAGCATC
GGGAAGGCCTGTATAGATAAATCCCCCTGACATCAACATAGCGGGGACACTCTAAGAACCTAATTTTAATGAATATACATTTTGACTTTCCAACTGCAAG
AGAATGAGGGCAGATTTGTTTAGATCTTCCTAATTAATAGCCCAGGTTGACTGTACTTTTCTGTTTAATATAACTGATTTCATCTCATTAAGGGAGAGGT
AGAAATTAGATGCATTCTCCACTTCCTGGTAAGAATATCTTCTTATTATAAGCTGGGCATAAAAACCCATCATGGCATGCGTACTGGGACTGCTGTGTTC
TGGGTGGAGCCACGTTCGGAAGACCTTGTCTGTAATGAAATGGGACATTTTTCTGTACTTAGTTAATAATCTTTGGGCAGCATTTGATCATTTGAAAAAA
GTCACACCATTCACTTGATCAGGAGGCATCTGCAGGGAATGCAGGTCGGGCCTGAGTCCTGTTGGCCCAGGAACAGGTAGTTGTGGCGTCAGGCAATTTT
TGTTGTTGTTGTTGATGTTGTTGTTTTTGAGACAGAGGCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACTATCTTGGTTCACTGCAACCTCCGACT
CCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGAATTACAGGCACGCACCACCAAGCCCAGATAATTTTTGTATTTTTAGTAGAGACG
GGGTTTTACCATGTTGGCCAGGATGGTCTTGATCTTCTGACCTTGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCAATGT
GCCCGGCCTGAGGTGTTTTTTTAGTCAGGTAATTGAGGTGTTTCCACCAGGACAAAGCCTCTTGGTGGCTGAGAGGGACCCCACTGAACTCTCTGCTGAC
CGATGGGGGAGCATGCTAAGTGCTTAGGAACATTAGCACATACCTTGTGAAACTGATGTTTTTATGGTCAAAAAGGGTTGGATATCAGCACTTCCATAAG
ATACAGTGGACATTGGGACGCACATTTACTCCCAGTGACCCCCCACTCTGTTCCTTGGTGCTCTGTGTCCCCACCTCAGCTGCTCTGGGCTGTGGCTTTC
TGCTCAGCAGTTCTTGTTTTGTTACTGCTGTTGTTGCCTTGGGGTGAGAAAGGATTTGTATCCGCACACAGAGGAAGATGAAAAATGTCATATTTCTTTA
TTTCGTAAAAGACTGAATTAAATACGACTCTCAAGCAATATCTTGGCAGGCTGGTGGGAAATTCAATCTCAGACATTTTGGACTTCCTTGTGCCTTCCTT
TTGGGGCACAGACATTCTGGAGGTTTTGGTGAGTTCGAGGGTGGCTGTGCTGGTCTCCATCTCTGGTGCTCACTACTGATGACCTTGTGCATGCTGTATC
ATTATTTCGAAAGATGATTTTATCTCAGTGTTTTGAATAAACATTTTCCACTGTGCTCCAAGGGCCTCCCAGTGGACTGATGGGTATTAGTTCCCAGATA
TGGGTCTTTGTGGAGGTTGTAGGCCCCGTGAGGCAGGGGACCACACCTGTCTTAATCACTGCTTCACCTCCAGAGCCCGGAACAGCGCCTGGTTCATAGT
GTCCAATAATTATTGAGTGATTGATTTAAACGGAAAAAGTCTCAGGGGTAACTGAATCAGGAAGTTGAGGATTTTAGGAGTAATCTGGATACAGTTCCTT
CTGGACTAACAGACAACTTAGGTAGAGAAAACATTGTTGAAATATACTTACATTATTCAGCAGAAAGAGACCTGAGGAATAATAAAACACTAGAAAGGAA
ATCACTAAGGAATTATCAGTAGACTTTCTGCAAGCAGTACATTTGTATAATTTATTACTGGATATATAACAATATGATCTCTTTTAAAATATACTTATTT
CAATATAACATACATAAATGTACATAAATAATACTTTGTGTAGTTAATGAGTCTTTACCTACTCAAAGGAAGAAAGAGAAGGTTATCAGCATCTAGAAAG
CACACTCCTGCCCCCTCCCAATTACAGCCTTCTCAAAATCTAATCCCTATCAGAGGGTCTATCATTAGGAATTAATTCTGATTGTTGAACTTTATACCCA
ATGTGTACAGAGTGTGCTTTCTTTTGTGTTGGACTTCCTTCACTCATCGTTATGTGTGGGAGATGCACCCATGTTGTGTGTGGTTGTAGTGTATTCATTT
TCATTGCAATGTAATATTCCACTGAAGAAGAAGTCGTGATTTATGCATTATACTGTTGAGGGCCGTTTGGGATGCCTACAATAAATAACAGTGCTATAAC
ATCCTTGTTCCTGTTTCTGGTGGATTCATGCAAACATTTCTATTGAGTGGAATTCTATTTAGGAGTGGAATTACTGGCTGACTTAGATCACATTCCCCAG
AAGCAAGAGTCTGAGATGGGTCTTACTGTGCAAGTGATTTACAGAAAGGGTGCTCTCAGGAGGAAGCTGGGAGGAAGCAAGGGAAGGAGGAGACAGCCTG
GGAGAAGCTATACCATATATGGGTTCGGGTAGAGTCCAGGGCAGCCTGATGCCATAGGGAGCTCTGGGGGGTGACCAGCACCACAGCATTGATCCTCTGA
GGGCTTTGGTATCTTTTCATCAGCCAGACATTGGCTGGGTGTCATCCCAGAGGGGTGGGGATAACATTGTGAAGCATCTGTATGTGTGATGGCTCCCATC
AGCAAAATCACTCTCTGGAAAAGGTGTGGGACCTCAGCAGCTAACACTCTGAGGAGCTGGGACATCGGTGCCCTGGCTCATAAAATGGCCTGGGTGGGTC
ACCAAGCATGTCTGCTACACTAAGGCAGCAAGGAGCCAATGGCCAGTATTAGCAGGCATTGCTAGTGTTTGTATGGATAGGAATACCTCGAGCATCGTAG
GAGGGTTTCTGTTGTTCCAGCTTCTCACCAACACTAGGTATTATCTGATTTTTCATTTTAGCCATTTTTTCCATTGTGCTCATTTGGCTAATAAGATACA
GTGGTATCTTGTTGTGACTTTAATTTGCATTTTCCCGATGACTAATAAGGCTCCCTTTCCTTATGTTTATTGCTGTGTGTTTATATTATTTTAAGAAGTG
TCTCAAGAACTCTACAATTACGTCGTCTTTAATTGGGTCGTCTGCCTTTTTCTTATTGTGTGGGTTAATTACCTATTCTGGACTGTAGTCCTCATCAGAT
ATTTGCTTTAGAAATGCCTTCTCCATCACTACGGTTGTCCTTTTTAATCTTGTAACATATCCTTTGCTCAACAGAAGTTCTTAATTTTAATGAAATCCAG
TGTCATCTTTTTCCTTTTATGGTTTGTGCCATTTGCCCTATTTAAGGAATCTTTGTCTGCCCCAAGCCCATGAAGATATTGTTTTATATTATCATCTAGA
AACTTCATTTTAATTTTCACCTTTCATATTTAGAGCACCAAAGCTTTGGGAACAGATCTTTGCCTATAGTGTGAGGTGGTATCTCTTTAGTCATAAATCA
AAGAACCCTATGTATGGTCTGTATCTCATTTTTCATTTGATTGGCTCTGTTTTCTATTCCAGTAGTTCTCAACCGGGGGTAAATTTTTCCCCCAACAGGG
GACATTTTGCAATTTCTGGAGTCGTTTTTTGTTGTCACAAGTGTGTGCAGAGGCTGCTACTGGCATCTCATGGGTAGAGACCAGGGATGTTGCTAAGCAA
CCTACATCACACAGGACACTCCCTAATAAAAAAACCATCCAGCCCCAAATGTCAGTAATGCTGAGGTTGGCTAAGAAACCTGGCCTGTGACTACACCAAG
GCCACAGTGTCTCACTGGCTGTGGCTGTGGCTCTGGCTCCACAATCAGCCCCTGCTTTTGGTGTTGTGACCTGTAATTCTGTGATTCTTTCCAGGCATAC
TTGGTGCTGCTTTTTTTTTTTTCTATGTAAATTTTTGAATCATTTTGTTAGTGTCCAAAAAAACAAAAAACAAACAAACAAACAAAAAAACAAAAACAAA
AACAAAAAAAAACGCTGCTGGGATTTTTATAGGATTGCCTATAATCTATACATCAACTTGAGGAAAACTGGCACCTTTCCAATAAGAACTCTTATAATCC
ACGAACATGATATATCCTTCCATTTACCTAGG

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.