Detailed information on TCONS_00161305

lncRNA-RNA interactions

Number of interactions: 63

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000330676 TLC domain containing 2 protein coding TCONS_00161305 603 303 UTR3 Trans
ENST00000398055 chromosome 12 open reading frame 66 protein coding TCONS_00161305 622 302 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00161305 600 283 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00161305 501 271 CDS_UTR Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding TCONS_00161305 612 276 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00161305 631 296 UTR3 Trans
ENST00000560870 sense_intronic sense intronic TCONS_00161305 546 268 noncoding Trans
ENST00000591226 tropomyosin 4 retained intron TCONS_00161305 601 304 noncoding Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00161305 614 285 UTR5 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00161305 624 276 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00161305 614 285 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00161305 624 276 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding TCONS_00161305 600 297 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding TCONS_00161305 627 296 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding TCONS_00161305 627 296 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding TCONS_00161305 627 296 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding TCONS_00161305 627 296 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding TCONS_00161305 627 277 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00161305 602 295 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding TCONS_00161305 602 265 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00161305 631 296 UTR3 Trans
TCONS_00051891 RNA binding motif, single stranded interacting protein 2 novel protein coding TCONS_00161305 622 304 UTR3 Trans
TCONS_00060110 chromosome 12 open reading frame 66 novel protein coding TCONS_00161305 622 302 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00161305 604 242 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding TCONS_00161305 604 242 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00161305 604 242 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding TCONS_00161305 615 305 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding TCONS_00161305 627 301 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding TCONS_00161305 627 301 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding TCONS_00161305 567 291 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding TCONS_00161305 567 291 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00161305 644 294 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00161305 644 294 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00161305 644 294 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00161305 644 294 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00161305 610 275 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00161305 653 296 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding TCONS_00161305 610 302 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding TCONS_00161305 613 303 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding TCONS_00161305 612 301 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00161305 615 296 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00161305 615 296 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00161305 615 301 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding TCONS_00161305 615 301 UTR5 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding TCONS_00161305 659 302 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding TCONS_00161305 616 301 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00161305 611 301 UTR3 Trans
TCONS_00185321 transferrin receptor novel protein coding TCONS_00161305 602 266 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00161305 606 301 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding TCONS_00161305 605 300 UTR3 Trans
TCONS_00191796 G protein-coupled receptor 125 novel protein coding TCONS_00161305 630 301 UTR5 Trans
TCONS_00191797 G protein-coupled receptor 125 novel protein coding TCONS_00161305 630 301 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding TCONS_00161305 606 268 UTR3 Trans
TCONS_00210637 polymerase (DNA directed), eta novel protein coding TCONS_00161305 535 268 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00161305 615 292 UTR5 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00161305 641 303 UTR5 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding TCONS_00161305 644 299 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00161305 611 298 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00161305 635 260 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00161305 611 298 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00161305 635 260 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00161305 646 285 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00161305 604 300 UTR5 Trans

Sequence

>TCONS_00252827 (5573 nt)
ACACTTGAAGAGGATCAATCCATGTCATCATGTCCCCAATTTCATAGCACCAAGTATTTTGTTTATTCACAAATGCCCTATTATGGACATCTAGCAAACA
ATGATACATCAGAAAAGGAGATGTGCATAAATTTTCATGGAATAAGGTTGTGGAAAATGCACTAGAATCAACAAACATGGGGACTAATTCAACTCGGATA
TCATGTCTTCAGAGAAGTTTCTCCTGCCCTCCTCTCCCTGTAGAATTAAGTATTCTTCCACTGTGCCACCCTCTAACTTGTGCTCATATCTTCCTCTATT
GTAGTTATGTGTTCACATCCCTGTTGTTTTTGTACCGGCTTCTCCCAAAGGGAGACATTTAGTCTTATTCTTCTTGGTAACTTTAGCACAGACCTGGCAG
ATTGTTGACACTCAACAAATGTTTATTGACTCAAATGCATTCAGTTGAACATTGACCTTTGATCAACTCTGGGAAAAGTCTGCAAAGCTAGTTAGGACAT
TCAGAAATTCATTTCATTTCAATCCTAACTAAATAAATTATTGAAGTCTCAGAACTTCTCAGTACTTGATTTAGACACATAGAAACTTGGGTAAATAACA
CCTATATTGTTATATTCCTCAAGAAAAAGTTTATCTTTTCATGAAATGAATCTACTGAGGATATTTATAGAAACTGAATGTAAGTGAGCAGAATAAAGTG
GTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAATTTGAAGAGTAGGTGGGAGAAGGTTGTGATAGGATAGCAGATCTTGTTTATGATAGTCACCAGCTA
TAACAGACACTGCCTGATGCCTTTCCAATATCCACTTCCCTTTTCTTTTTTTTCTTTTTGGAACAGAGTCTCACTCTGTCCCCCAGGCTGGAGTGCAACA
GCACGATCTCGGCTTACTGCATCCTCTGCCTCCTGGGTTCAAGCAATTCTCATGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCTCTCGCCACCACGC
CCAGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCT
CTAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCTCTCTTTTCTTACTTAATGTCTGTGTCAATTAAATAGAAATGTATCAAGTTAAAAACCTT
GCCTCGGTAGCTTCCAGTGCAAATAAAGGTACCCATGCCACCCCATTCTGGCCAGCAGTAAAATTGATGGAAGCCTCTGGTTGGGGCTTCAAGGAAAGCT
TTATCAAAAGATAAACTCACTGGCTTTGTCCCTTAGTTCAGTGGTCCCCAACCTTTTTGGCACCAAGAGACCAGTTTTGTGGAAGACAATTTTTTCCATG
GACCAGGAGGGTTCCGGGGGATGGTTTTGGGATGAAAATGTTTCACCTTAGATATCATCGGGCATTCAATTCTCATAAGGAGCCTGCAACCTAGACCTCT
CACATGTGCAGTTCACAATAGGGTTCATGCTCCTATGAGAATCTAATGCCACTGCTGATCTGACAGGAGGCAGAGCTCAGGCAGTAATGCTCACTAGTTC
CGTTGCTCGCCTCCTGCTGTGCAGCCCAGTTCCTAACAGGACACAGACCAGTACTGGTTCGCAACCCAGGGTTTGGGGGCCCCTGTCTTAGTTCCTTTGC
CTTCCTTCCAGATGGATGCCTGGAGGAACAATCATCCCGCAATTGTGAAAATTGAAGCCATATTTTAAAGTTGGTTTCAATTGTAATACAGAAGAAATCT
GGACCTTGATGACATTTGAGCTAGAGTACTAATCTTGATCTTCCTATTCATGAGCTTGTTGCAAGAGACAAGACTTTTACTGATTTAACTCATTGTTGGG
ATTTCTTGGAACTAAACACAGTCATAATACATTTTTTCCTTCCCAGGAAAATGGTAGAGCATGACTTTTCAAATCTAATAAAACTCATGTGTAGCTAAAA
CCACTCTACTGAAACAATTCCATCTCAGCCCATGGTACAAGGGATTTTCCTGAATGAAAAATGGTGTCTGATCATTTTGTTGGTTTCTTTGTTGGTTTTT
CCTGAAACTTAGGGTTAAAGAATCCAGGAAAGTTGTCTTAGATAGAGTTATAATTTCCGTGGACATCAACTGATAAATGCAATTACAGTTTGTATGCCTA
GGTTTGGCAAAAATCATATAAGCAACATCCCTCACATAATATTGTTTTAATTAAATTTTATTTCTTTCTTGGTATGAAACATACTGCAGAAGCACAATCA
ATGAACATTGGATAGTTTCCTTAAATCTTGCTCTTTGTCCTATTTATATAATTTATTGTGTCAGTGGTTCTCAAGTGGTATGCTCCTGCAACTCATCATC
TGAAAATCCTTCCCAGATGTGCTGAAAAATTTTCATTAATTTGTATATTCTATTTTATTTTTATAACTAAGTACACATGCTTGTGACTGGAAGAGAAGAC
ACCCCTCATTTAATCCCAGAGGAATATTTGGCCTTGATTCATGCCCTGCTCACTCCACCCCATTATTAAGATAGAGATCGCTGAAGAAATCCCTGCTCTA
TAAATGTAGCTGATCCAAAAACAAAATGGAAATTCATTATTTTAAATATTTCTACAAGATCTTTGTACAACTCTATTTTTTTTTCCTATTAAGAATTACA
TGATTCTAGAATAAGTTCCAACCCTAAGTATCAACACTGGAACACAATTTTAAAACAGGAGGCGATTATCTCTATAGTGAGATTTAACTACAGAGGTGAT
AGCTCTGGTTAGTGAATTTCAGGACTAGAAATCAGGCCTGCTGTCTCTTAGCTTAGAGGAGGTATAATAAGAAGAGGATTAGAACTACTGTGTATATTAA
CAAGAAGAACTCTATTATGTTCAGCTATCATTATATATGATATTATGTTTCTTTTTATGAACTATAGTTCACTGTCTTTAAGCATAATGTTTGCCCAAGG
TGGGGGTGTTGGTGTGTGTCTGTGTGTATATGCATGTGTGCACATGTGTGTATGTATAGTTGATTCATTCATTCTGACCTACTGAATTTACTGAAGGAAT
AAGAAGAAATACCTTGAACTGAGGGACCTGGCTTAGCTCAACATCTGTACCATCTACCTTTGAGTATCCATTCCTTTACTATGAAGCATGGATGCTAAAA
CTAAAATTGCATTTGCTAAACTACTTTGTAGCTAGATTCCTGGGTGAGATTAGATTTGGTCAATTAGATGTTCTTGTGTAACATTTAGAAGGTGATAGTA
AGGCAAAGGTCATGTGACTGGCTGATTTTATTTATGTTCAATGATCTTTATTGGGGTACACTTTATATATAATAATAAATAATGCACACATTTTAAGTGT
ACAATTTGATGAGTTCTGACAAATTTATATGCATGTATAACCAGCATCAATATCAAGATATATAATGATCCCCTCATTCCAGAATAGTCTCTTGTGTTCT
TTCCAGCCAATGCCCCACCCCTGGATTCTGGCAACAATTGATCTGCTTTTTATTACCATGGATTATATTTGTCTTTCCTAGAGATACAAATAAATGAAAT
AATGTAGTGTGTCCTCTTTAACTTTGGCTTATTTCTCTCGGCACACTATTTCTGAAATTTGTCCATACTGTTGATATGGCAGACAGAATTTTAAGATGGT
TCCTAAAATTCTTGCCTCCTGGTATGTATAATTTTCTCTCGGTTTTCCGCTGAACACTAACCTAGGTGCTATTGTAAAGGGATTTCTCAAGTGTAATTAA
AGTCCCTAATAAGTTTATTTTAAGTTAGAAAAATTTTCCCAGGTGAGCTTGAGCTAAGTGAGTGACCTAAGCAGGTGAGTTGTTAGAAAAAAATTAAGAG
ATATTTGAAGCGTAGACAAAATTCTGTTGGCTTTTAAAAGAAAACTTCCATGTGATAGAGAAAGCCAGATGATAGGGAACACAAGGTTACCTCTAAATTG
ACAACCAGCAAAAAAGCTGAGACTTCAGTCTTATCATCATAAGGAATTGAATTCTGTCAACAGCCACGTGACCTTAGAGGAGGCCCCTGAGCCGCAGATG
AGATCATGGCCCTGGCCAATACCTTAAATTCATCCTGGTGAGATATGAGCAGAGAACTCAGCTATGCCATGCTCAGATTTCTCACCTGTAGAGCAGTAAA
TTAATAAGTGAGCATTATTTGAAGCTGCTAAGTTTGTGGTGATTTGTTACACATCAAGAGAAAACATATGCTGTATATATTATTAGATTTTTCCTTTATA
TTGGTGGGTGTATTTGTTATCTATTACTTCCTAACAAATCGACAATAATTAAGTGTCTTAAGACAACACATATTTATTACCTCATAGTTTCTGTGGGTCA
GAAATCTGGGCATGGTTTATGTGAGTTCTTTGATTTAAAGTTGTTGGCAAATCTGTAAACAAGGAAGCAGTCAGGACCGAGGTCTCATCTGAAAGTCAAC
TTGGGATGGGTCTGCTTCCAGCCTCACTTAACATAACAGCTGGCAGGATTCAGTTGCTCTTGGGTAGTTGGATTGATGGCCTCAGATAACTAGGTAGCTA
TTAGCTAGATTTCACCCTCAGTTTGTTGCCGTGTGGGCCTCCCTAAGGTGGCAATTTACTTCATCAAAACCAGCAAGGGAGAGAGTTGGCTACAATCTCT
AGTAATGTAGCTACAGAAATGACATCCCCTTAGCAATGAGATATTTTATTAATTAGAAAGAAATTACTCAACAGGAGGGGATTACACAATGTAGTGAATA
CCAGGAGGCTGAGATCAGAAGGAGCTAGTGTAGAAGCTGCCTACCACAGTGAGTAGTATTCTATTACATGAATATACCAGAATGTCTGAATCCACCCAAC
TGGGCATAGACGTTTGTGTTCATTCAAGATACAGACTATTATTATTTTAAAAATAAAAGTTACTATGAACATTTAAGTATAAGCTTTTGTGTGGGCGTGT
TTCATTTGTTTTGAATGAAATTGCAGGGTCGCATAGAAAATGCATATTTAATCTTATAAGAAGCTGCTTAAAATGCTTTGCAATGTGATTTTACCATTTT
ACACTCCCAACAATGTATAGCAATATATCATAGATCTAGTGGTTTCATATCTCCACAAACACTTGATATTGTCACTCAGTTTAATTGTAGCTACTTAAAT
AGGCTTATAATGGTACTCGTTATGATTTTAATATGCATTTCCCTAATGCCTATTAGGGACTAATTATGTTAAGCATCTTTTCATGTATTTGGAGGCCATT
TGTGTACCTTCATTTGTAAAATATCTGTTTAAGTAGCTTGCCCATTTGGATTGCTTTACATTTTATTATAGAGTCATAAGCATCCTTTATATATTCTGAA
TATAACTCTTTTATCAGACATACATATATATCAAATATTTTTTTCTAAGTTTGTGGTTTGTGTTTTTACTTTTTATACTGTTTATTGAATAGTAGATTTT
ATATTCATTTTATCCATTCTGTTATGATCGATATTTTTTGAACTATGAAAATATTGCTATGTAAAAATAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.