Detailed information on TCONS_00161408

lncRNA-RNA interactions

Number of interactions: 38

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000292069 zinc finger protein 667 protein coding TCONS_00161408 540 290 UTR3 Trans
ENST00000304748 formyl peptide receptor 1 protein coding TCONS_00161408 522 290 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding TCONS_00161408 618 315 UTR3 Trans
ENST00000424496 sense_intronic sense intronic TCONS_00161408 605 286 noncoding Trans
ENST00000504904 zinc finger protein 667 protein coding TCONS_00161408 540 290 UTR3 Trans
ENST00000591790 zinc finger protein 667 protein coding TCONS_00161408 540 290 UTR3 Trans
ENST00000592189 zinc finger protein 667 nonsense mediated decay TCONS_00161408 540 290 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00161408 563 299 UTR3 Trans
ENST00000623752 TEC TEC TCONS_00161408 660 287 noncoding Trans
TCONS_00010507 SET and MYND domain containing 2 novel protein coding TCONS_00161408 545 293 UTR3 Trans
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding TCONS_00161408 540 295 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00161408 599 287 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00161408 616 301 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00161408 658 287 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00161408 573 296 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00161408 616 301 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding TCONS_00161408 635 285 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding TCONS_00161408 514 239 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding TCONS_00161408 635 286 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding TCONS_00161408 616 299 UTR3 Trans
TCONS_00102930 suppressor of cytokine signaling 7 novel protein coding TCONS_00161408 613 299 UTR3 Trans
TCONS_00102933 suppressor of cytokine signaling 7 novel protein coding TCONS_00161408 613 299 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00161408 603 302 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00161408 604 299 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding TCONS_00161408 602 285 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding TCONS_00161408 602 285 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00161408 623 288 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding TCONS_00161408 604 285 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00161408 633 301 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00161408 653 299 UTR5 Trans
TCONS_00213182 tubby like protein 4 novel protein coding TCONS_00161408 603 300 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding TCONS_00161408 605 281 UTR3 Trans
TCONS_00226572 diacylglycerol kinase, beta 90kDa novel protein coding TCONS_00161408 542 273 UTR3 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding TCONS_00161408 646 299 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00161408 604 302 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00161408 604 302 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00161408 604 302 UTR3 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00161408 615 269 UTR3 Trans

Sequence

>TCONS_00253055 (2191 nt)
GGTCATAAATTTAAGACATGTAGTTCTTAGATTTAAATTTGATAGTGGTTGAAAAAATTTGACAATAGTTCACATTCTTAAAAGTCAAGGAAAATAAAAA
CATAACCGCATTATGGGTTGAATTTTCCCCCAAAATATATGTTGAAGTCCTAATGCCTACACCTAAGAATACAGCCTTACTTGGAAACAGGGTCTTTGCA
GATATAAGATGAGGTCACAATGGAGAAGGGTGGGCCCTTAATCATATTAGAGAAGACACAGAAACAGAGACATGGGGAGTAACACCATGTGAAGACAGAG
GTGGAGATTGGAGGGGTGCATGTACCAACCAAAGGAATATCAAGGGCTGGCAGCAGCACTAGAGCAAGCGAAAGGCATGAAACAGATTCTCCCCTAGAGC
TGTAAGAGGCAGTGTGGCCCTGGCAACACCTTGCTTTAGGACTTCTAACCTCTAGAATAATGAGATAATGAGAGTATATTTCTGTTGGTTTCGGCCATGC
GGTTTGTGGTAACTGGTTCCAGCAGCCCTAGGAATCTAATACACTGCCCATGGAACAAATCCTTTCTTGACCACCAATGGCTGCATGACTTATCCTGAGA
AGATCATGGGGATTTTGGATGCCAGGTCAACCCTTACACTCAGCAAGGAAGTGGAAGGGCCTCAGTTTCAAACACTTTGTAAACACAGAGATAAGGTCGT
CCCTCTGTCACCCAGCCTGGAGTGTAGTGGTGCCGCCAGGCCTCACTGCAACCTCCAACTCCTGGGCTCAAGTGATCCTCCAACCACAGCCTCCTGACTA
GCTGGGATTACAGGTTATTTTGAGGATCAAGTGAAACTTAGAAACAATAACAACAAAAAAAGCAAAGTCTGTGATCAAGAAGAATTACTCTGTTGCAACA
ATATAAACTAAGAAAAAAATACGCAAAATTCTCTGCTGCCTTGGGAGATGATCTCATGATGTGTATCATTTACTTTTAATATTTTTATTTATTTATTTTT
GAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTTCGCCTCCCGGGCTCAAGTGATTCTCCTGCTTCA
GCCTCCTGAGTAGCTGGGATTATAGGCATGTGCCGCCATGCCTGCCTAGTTTTTTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGCTCT
CAAACTCCTGACCTTGTGATCTGTGCGCCTCAGCCTCCCAAAGTGCTGGGATTACTGGTGTGACCGACCGTGCCTGGCCAATGTGTATGATTTAATAGCC
AGCAGCAACAGGCCACTAACATGCCATCTGCTAACAGGGGCTCTAGCTATTAACATCAACAGAGCTAAAAACTCTTATGTCTGATCCCTTGCAAATGGCG
AAGACCTGGCTGAGAATTATTATCTCATGCTTTCAGAGAAAACTTTGCTTGTCCTGCACTGAAAAATCTGGCTGCAATAATCACATGGAAGAAGGTATGT
TTGTTGGCATGGTTCATGGGCTGGCTTATGACTTCTAAGCAGAAGATACAAAATAATATAAAAATCCTGCAACATGCACAATGTAGCTGATATTCATGTT
CTCTTTAAATATCTTAACACTGACTTACATATTTAAGGGTGTGGAGTCTTTGAGCTTGGGAAGCATCTTATTACTGAGGTACAAATGCTAAAAGAGGGAC
ATTTCTTCTATCTACCGCATTTTCAATGAAAAGATGCTGAAGGTGAATAAACAGCTCTGCAAACCCAGTTTTGTTTAACTTGGCAACAGCAGTAAGTAAG
TATCACTGGACACAGAGACACTGGAATAGATTCAGTCTTTAGTCTTATTCATCACGTCTGACCTTGGGCATATTACATGGTTTTCCTGAGCCTATGAAAT
CATGCGGCTGAACGAGCTGAAAACTAAGATTCTTTCCTTTGCTAATAAATTTCAGCAAACGATAGGAGTAAGAACGGCTGTCTAACGAGACTACCAAATG
CTACGAGACGCAGCAAGCAATGTCCCTTTACCTAATGGATACAGCTTCTTAACTGTTTATCCAAAGTCTCCCCAAGCAAATTCTAAATTATTCTAAATTA
TTTGAGTAACAAAGATTGGGCCCTTATACCTGTGACGTGTCTGGCAATGACAAAGAATGTGGAACATGGGAAGCATTTAATACATATTTATT

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.