Detailed information on TCONS_00165503

lncRNA-RNA interactions

Number of interactions: 32

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262031 RNA binding motif, single stranded interacting protein 2 protein coding TCONS_00165503 746 555 UTR3 Trans
ENST00000338758 parvin, beta protein coding TCONS_00165503 703 540 UTR3 Trans
ENST00000450928 antisense antisense TCONS_00165503 513 271 noncoding Trans
ENST00000517408 antisense antisense TCONS_00165503 509 271 noncoding Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense TCONS_00165503 549 265 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00165503 566 267 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00165503 605 266 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00165503 563 260 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding TCONS_00165503 602 266 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding TCONS_00165503 602 266 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding TCONS_00165503 602 266 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding TCONS_00165503 602 266 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding TCONS_00165503 604 266 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding TCONS_00165503 604 266 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00165503 657 267 UTR3 Trans
TCONS_00051899 RNA binding motif, single stranded interacting protein 2 novel protein coding TCONS_00165503 746 555 UTR3 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding TCONS_00165503 611 269 UTR5 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00165503 694 552 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00165503 694 552 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00165503 639 421 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00165503 605 266 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00165503 626 275 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00165503 568 265 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00165503 613 534 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00165503 614 266 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00165503 614 266 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding TCONS_00165503 614 266 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00165503 642 407 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00165503 642 407 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding TCONS_00165503 615 361 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding TCONS_00165503 607 266 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00165503 706 554 UTR5 Trans

Sequence

>TCONS_00252827 (2500 nt)
GTCTAGGGCCTTTGGGGAACGAGGTCGGCCCCAGCGCAGGCGCGGTGGCGCGAGTTGGACTGTGAAGAAACATGGCGGCCGCGACGTTGACTTCGAAATT
GTACTCCCTGCTGTTCCGCAGGACCTCCACCTTCGCCCTCACCATCATCGTGGGCGTCATGTTCTTCGAGCGCGCCTTCGATCAAGGCGCGGACGCTATC
TACGACCACATCAACGAGGGGAAGCTGTGGAAACACATCAAGCACAAGTATGAGAACAAGTAGTTCCTTGGAGGCCCCCATCCAGGCCAGAAGGACCAGG
TCCACCCAGCAGCTGTTTGCCCAGAGCTGGAGCCTCAGCTTGAAGATGATGCTCAAGGTACTCTTCATGGACCACCATTCGCTGTTGGCAAGAAACGGCT
TTACTTACAAAACAGACTCTTTACCTTCTGCTGTGTTTGAAGTATGTTTAGTCAGCATGCTCAGGAAATAAATGTGAATTGCCCTTGAGACCTGCTTCTA
CATTGGTTGCTTTGTTAACTCTACCTGATCTTCACTTGTCAGTAATTTGAGACCACTTCAAAGCCCTCTGCAAACACCCCAAAGGCAGAATCTGCTATTT
TGAGTTTTCCATTAACTTCCAAAGAATTCTGGTTTTCAAAACAGGAGCCAGAGTTGGAGATATTACAGTCAACTTTGGCTTCTAAGCCAGTAATTCCATT
CTTAAATACCTCACTGTCTTGGCCATGGGGAAGCACTATGGCCTCAGCTGGGGGAAAGACCCTGGCCTAGGGGTCTTAGCCACTCCCCACCCTAGGGTAT
AGTTCAGGGGTATCCAATCCTTTGGCTTCCCTGGGCCATGTTGGAAGAATTGTCTTGGGCCACACATAAAATACAGTAACCATAGCTGATGAGCTAAAAC
AAAAAACAATGGTTTGTGCAAAAATCTCATAATGTTTTAATAAAGTTGAAGAATTTGTGTTTGGGCCTCATTCAAAGCCATCCTGGGCTGCGTGCAGCCT
GCAGGCCACGGGTTGGACAAGCTTGGTGTATTCTGCCTATTACTGAGTATCTTTTGGTAAGCAGTCATACCTCTCTGGGTCACAGCCTCCTGCCACAGTT
CCACTCTGATGAGTTCAGTTCATAAAAGTGCTTAGTTGGTGGGTTTGAATCCTTACTCCACTGATTCTAGCTATGGGAACCAAGGTGATATGGTTTGGCT
GTGTCCCCACCCAAATCTCGTTTTGAATTGTAGCTCCCATAGTGCCCATGTGTTGTGGGAGGGACTCGGTGGGAGATAATTGAATCATGGGAGCGGTTCC
CCCACACTGTTCTCGTGATAGTGAATAAGTCTCACGAGATCTGATGATTTTATAAGGGGTTTCCCCTTTTGCTTGGCTCTGATTCTCTTGCCTGCTGCCA
TGTAAGACGGGCCTTTCGCCTTCCACCATGATTGTGAGGCCTCCTCAGCCATGTGGAAATGCGAATGCATTAAACCTCTTTTTATAAATTACCCAGTCTC
GGGTATGTCTTTATCAGCAGCGTGAAAATGGACTAATACACAAGGGCAAGGCACTTGAACTTGCTGAACTCCGGTTTCCTTATCTGTAAAATGGGGTAGT
AGAACATACTGTGTGGGATTTTTGGGAGTATTAAAGGAGTTGCAGGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAAC
AGTTTAAGACCAGTCTAAGCAACATAGTGAGATACCCTGCCTCTACAAAAAAATTTAAAATTACCTGAGCATGGTGGCACCAGCCTATAATCCCAGCTAC
TTGGGAGGCTGAGGTGGGAGGATTACTTGAGCCAAGAAGTTAAGGTTACAGTGAGTTATGATTGTGCCACTGCACTCCTGCCTGGGGGAGAGTGAGACCC
TGTCTCTAAAAATTTTTGGCTGGGCATAGTGTCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACTTAAGGTCAGGAGCTCAAG
ACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGAGTGTGGTGGCATATGCTTGTAATCCCAGCTACTCGGGAGGCT
GAGGCAGGAGAATTGCTTGAACTCGGGAAGTGGAGGTTACAGTGAGCCGAGATTGCGCCACTACACTCCAGCCTGGGAGACAGCAAGACTGTCTTGCTCT
GTCATCCAGAATGGAATGCTATGGCCTGATCTCAGCTCAATGCAGCCTCGACCTGGGTGCAAACAATCCTCCCACCTCAGCCTCCCAGGTAGCTGGGACT
ACAGGTGTGCGCCACCACTCCCCACTAGTTTTTTTGTATTTTTTGTAGAGGTAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGACTCAAG
ACATCCTCCTGCCTTGGCTTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCATGCCCAGCCAAAAATGTTTTTAAATTAAATTTTTAAAAATAGAGGA
G

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.