Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000262031 | RNA binding motif, single stranded interacting protein 2 | protein coding | TCONS_00165503 | 746 | 555 | UTR3 | Trans | |
ENST00000338758 | parvin, beta | protein coding | TCONS_00165503 | 703 | 540 | UTR3 | Trans | |
ENST00000450928 | antisense | antisense | TCONS_00165503 | 513 | 271 | noncoding | Trans | |
ENST00000517408 | antisense | antisense | TCONS_00165503 | 509 | 271 | noncoding | Trans | |
ENST00000524264 | SAP30L antisense RNA 1 (head to head) | antisense | TCONS_00165503 | 549 | 265 | noncoding | Trans | |
ENST00000549365 | DNA-damage regulated autophagy modulator 1 | nonsense mediated decay | TCONS_00165503 | 566 | 267 | UTR3 | Trans | |
ENST00000572705 | transient receptor potential cation channel, subfamily V, member 1 | protein coding | TCONS_00165503 | 605 | 266 | UTR3 | Trans | |
ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | TCONS_00165503 | 563 | 260 | UTR3 | Trans | |
TCONS_00023682 | pre-mRNA processing factor 18 | novel protein coding | TCONS_00165503 | 602 | 266 | UTR3 | Trans | |
TCONS_00023685 | pre-mRNA processing factor 18 | novel protein coding | TCONS_00165503 | 602 | 266 | UTR3 | Trans | |
TCONS_00023687 | pre-mRNA processing factor 18 | novel protein coding | TCONS_00165503 | 602 | 266 | UTR3 | Trans | |
TCONS_00023689 | pre-mRNA processing factor 18 | novel protein coding | TCONS_00165503 | 602 | 266 | UTR3 | Trans | |
TCONS_00027001 | programmed cell death 4 (neoplastic transformation inhibitor) | novel protein coding | TCONS_00165503 | 604 | 266 | UTR3 | Trans | |
TCONS_00027009 | programmed cell death 4 (neoplastic transformation inhibitor) | novel protein coding | TCONS_00165503 | 604 | 266 | UTR3 | Trans | |
TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | TCONS_00165503 | 657 | 267 | UTR3 | Trans | |
TCONS_00051899 | RNA binding motif, single stranded interacting protein 2 | novel protein coding | TCONS_00165503 | 746 | 555 | UTR3 | Trans | |
TCONS_00080928 | SH3-domain GRB2-like 3 | novel protein coding | TCONS_00165503 | 611 | 269 | UTR5 | Trans | |
TCONS_00089065 | eukaryotic elongation factor-2 kinase | novel protein coding | TCONS_00165503 | 694 | 552 | UTR3 | Trans | |
TCONS_00089066 | eukaryotic elongation factor-2 kinase | novel protein coding | TCONS_00165503 | 694 | 552 | UTR3 | Trans | |
TCONS_00089066 | eukaryotic elongation factor-2 kinase | novel protein coding | TCONS_00165503 | 639 | 421 | UTR3 | Trans | |
TCONS_00107851 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00165503 | 605 | 266 | UTR3 | Trans | |
TCONS_00118919 | potassium channel tetramerization domain containing 1 | novel protein coding | TCONS_00165503 | 626 | 275 | UTR3 | Trans | |
TCONS_00135884 | zinc finger protein 347 | novel protein coding | TCONS_00165503 | 568 | 265 | UTR5 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00165503 | 613 | 534 | UTR3 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00165503 | 614 | 266 | UTR3 | Trans | |
TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00165503 | 614 | 266 | UTR3 | Trans | |
TCONS_00147106 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00165503 | 614 | 266 | UTR3 | Trans | |
TCONS_00194652 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00165503 | 642 | 407 | UTR5 | Trans | |
TCONS_00194655 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00165503 | 642 | 407 | UTR5 | Trans | |
TCONS_00196475 | F-box and leucine-rich repeat protein 7 | novel protein coding | TCONS_00165503 | 615 | 361 | UTR3 | Trans | |
TCONS_00230128 | solute carrier family 26 (anion exchanger), member 5 | novel protein coding | TCONS_00165503 | 607 | 266 | UTR3 | Trans | |
TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | TCONS_00165503 | 706 | 554 | UTR5 | Trans |
>TCONS_00252827 (2500 nt)
GTCTAGGGCCTTTGGGGAACGAGGTCGGCCCCAGCGCAGGCGCGGTGGCGCGAGTTGGACTGTGAAGAAACATGGCGGCCGCGACGTTGACTTCGAAATT
GTACTCCCTGCTGTTCCGCAGGACCTCCACCTTCGCCCTCACCATCATCGTGGGCGTCATGTTCTTCGAGCGCGCCTTCGATCAAGGCGCGGACGCTATC
TACGACCACATCAACGAGGGGAAGCTGTGGAAACACATCAAGCACAAGTATGAGAACAAGTAGTTCCTTGGAGGCCCCCATCCAGGCCAGAAGGACCAGG
TCCACCCAGCAGCTGTTTGCCCAGAGCTGGAGCCTCAGCTTGAAGATGATGCTCAAGGTACTCTTCATGGACCACCATTCGCTGTTGGCAAGAAACGGCT
TTACTTACAAAACAGACTCTTTACCTTCTGCTGTGTTTGAAGTATGTTTAGTCAGCATGCTCAGGAAATAAATGTGAATTGCCCTTGAGACCTGCTTCTA
CATTGGTTGCTTTGTTAACTCTACCTGATCTTCACTTGTCAGTAATTTGAGACCACTTCAAAGCCCTCTGCAAACACCCCAAAGGCAGAATCTGCTATTT
TGAGTTTTCCATTAACTTCCAAAGAATTCTGGTTTTCAAAACAGGAGCCAGAGTTGGAGATATTACAGTCAACTTTGGCTTCTAAGCCAGTAATTCCATT
CTTAAATACCTCACTGTCTTGGCCATGGGGAAGCACTATGGCCTCAGCTGGGGGAAAGACCCTGGCCTAGGGGTCTTAGCCACTCCCCACCCTAGGGTAT
AGTTCAGGGGTATCCAATCCTTTGGCTTCCCTGGGCCATGTTGGAAGAATTGTCTTGGGCCACACATAAAATACAGTAACCATAGCTGATGAGCTAAAAC
AAAAAACAATGGTTTGTGCAAAAATCTCATAATGTTTTAATAAAGTTGAAGAATTTGTGTTTGGGCCTCATTCAAAGCCATCCTGGGCTGCGTGCAGCCT
GCAGGCCACGGGTTGGACAAGCTTGGTGTATTCTGCCTATTACTGAGTATCTTTTGGTAAGCAGTCATACCTCTCTGGGTCACAGCCTCCTGCCACAGTT
CCACTCTGATGAGTTCAGTTCATAAAAGTGCTTAGTTGGTGGGTTTGAATCCTTACTCCACTGATTCTAGCTATGGGAACCAAGGTGATATGGTTTGGCT
GTGTCCCCACCCAAATCTCGTTTTGAATTGTAGCTCCCATAGTGCCCATGTGTTGTGGGAGGGACTCGGTGGGAGATAATTGAATCATGGGAGCGGTTCC
CCCACACTGTTCTCGTGATAGTGAATAAGTCTCACGAGATCTGATGATTTTATAAGGGGTTTCCCCTTTTGCTTGGCTCTGATTCTCTTGCCTGCTGCCA
TGTAAGACGGGCCTTTCGCCTTCCACCATGATTGTGAGGCCTCCTCAGCCATGTGGAAATGCGAATGCATTAAACCTCTTTTTATAAATTACCCAGTCTC
GGGTATGTCTTTATCAGCAGCGTGAAAATGGACTAATACACAAGGGCAAGGCACTTGAACTTGCTGAACTCCGGTTTCCTTATCTGTAAAATGGGGTAGT
AGAACATACTGTGTGGGATTTTTGGGAGTATTAAAGGAGTTGCAGGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAAC
AGTTTAAGACCAGTCTAAGCAACATAGTGAGATACCCTGCCTCTACAAAAAAATTTAAAATTACCTGAGCATGGTGGCACCAGCCTATAATCCCAGCTAC
TTGGGAGGCTGAGGTGGGAGGATTACTTGAGCCAAGAAGTTAAGGTTACAGTGAGTTATGATTGTGCCACTGCACTCCTGCCTGGGGGAGAGTGAGACCC
TGTCTCTAAAAATTTTTGGCTGGGCATAGTGTCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACTTAAGGTCAGGAGCTCAAG
ACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGAGTGTGGTGGCATATGCTTGTAATCCCAGCTACTCGGGAGGCT
GAGGCAGGAGAATTGCTTGAACTCGGGAAGTGGAGGTTACAGTGAGCCGAGATTGCGCCACTACACTCCAGCCTGGGAGACAGCAAGACTGTCTTGCTCT
GTCATCCAGAATGGAATGCTATGGCCTGATCTCAGCTCAATGCAGCCTCGACCTGGGTGCAAACAATCCTCCCACCTCAGCCTCCCAGGTAGCTGGGACT
ACAGGTGTGCGCCACCACTCCCCACTAGTTTTTTTGTATTTTTTGTAGAGGTAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGACTCAAG
ACATCCTCCTGCCTTGGCTTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCATGCCCAGCCAAAAATGTTTTTAAATTAAATTTTTAAAAATAGAGGA
G
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.