Detailed information on TCONS_00170862

lncRNA-RNA interactions

Number of interactions: 27

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding TCONS_00170862 550 250 UTR3 Trans
ENST00000379565 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein coding TCONS_00170862 598 309 UTR3 Trans
ENST00000380641 centlein, centrosomal protein protein coding TCONS_00170862 613 288 UTR3 Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay TCONS_00170862 541 286 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00170862 662 309 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding TCONS_00170862 612 280 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00170862 622 285 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding TCONS_00170862 550 250 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00170862 622 285 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00170862 506 234 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding TCONS_00170862 649 287 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding TCONS_00170862 649 287 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding TCONS_00170862 611 285 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00170862 547 289 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00170862 510 273 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00170862 650 293 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00170862 650 293 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00170862 563 290 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00170862 609 257 UTR5 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00170862 614 292 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00170862 600 285 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00170862 636 284 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding TCONS_00170862 636 279 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding TCONS_00170862 626 302 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00170862 601 288 UTR3 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding TCONS_00170862 680 295 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00170862 609 285 UTR3 Trans

Sequence

>TCONS_00253055 (6929 nt)
CTTCTTTCTTAGAACTGCTTTTGCTGCATTTTGTAAGTTTTGGTATATTGTATTTCCACTTCTGTTTGTCTTAAGATATTTTTAAATTTCCCTTTTAAGT
TCTTCTCTGACCCATTGGTTGTTCAGGAGAATGCTGTTTAATTTCAACCTATTTGTAAATTTTCCAAAATTCCTCCTGTTAATGATTTATATAGGTTGGT
CCAAAATAATTGCGGTTTTTGCCATTGAAAGGAATGGCAAAAATGCTATTATTTTTGCACCAATCCAATACTTTCCTACCAGTGTGGTTGGAATAGACAG
TTGGTATGATTTCAGTCTTTTAAAAGTTGTTAAGACTTGTTTTATGGACTATCATCTGATCTGTCCTAGAGAAAATTTCATGTGCACTTGAGAAGAATGT
GTATTCTACTCTCATTGAATGGAATGTTCTGTATATGTCTGTTAGGTCCATTTTCTTTAAAGTATAGTTCAAGCCCAGTGCTTTGTCATTGATTTTCTGT
GTAAATGATTTATCCATTGTTGAAAGTGTAATATTGAAGTCCCCTACTATTATTGTATTTCATTCAATCTCTACTTTCACATATTTATTTATTTATTTAT
TTATTTATTTGAGATGGAGTGTTGCTCTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTAGGCTCACTGCAGCCTCCACCTCACAGGTTCAAGTGATCC
TCTCCCATCAGCCTCTCAAGTAGCTGGGATTACAAGCATGTGCCGCCACATCCAGCTTATTTTTTGCATTTTCAGTAGAGACGAGGTTTCACCATGTTGG
CCCCACTGGTCTCAAACTCCTGACCTCACATGATCCACCCACCTTGTCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCAGCTCAGATTT
ATTAATGTTTGCTTTATATTATATTATATATATATTTTATATATTTACAGCAAACATTAGGTGCTGTAACATTAGGTACATGTGTATTTACAGTTGTTAT
ATCCTCTTGATGAATTGATCCCTTTATCATTATATAATGCCCTTTTTGGTCTCTGTATCGTTTTTTGTTGTTGTTGTTGTTTTTGAGATGGAGTCTCCCT
CTGTCACTAGGCTGGAGTGCACTGGTGTGATGTCGGCTCACTGCAATCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTAG
AACTACAGGCACGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGACAGGCTGGTCTCGAACTCCTGACCTTG
TGATTCGACTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCCAGTTTTTCACATAAAGTCCATTTTGTCTGATATAAAC
ATAGCTGCTCCTGCTCCTTCAGGATCCCCTACCCCTTGGTGTTTAATCCTCTTAACTCTCTGAAAATGCATTTGTTTAGACATGTTAGTTTGAGTTCCCC
AAGAAACAGACTCTGAGACAAGGATTTGAGTGCAAGTAGTTTATTTGGGTTGAGAGTAGGAGAGTTAAAAGTGAAACACTGAGGAAAAGGTGGCCAATAA
AGAGTGAATTACTAAGCCAGCTCTCACTGTGGGCAATTGGTACTCAATTCTGTGCAGGAATAATTGGGAGCTGGTGTAGAACACTTACCTCAGAGTTATT
CCATCTGAAGAGTGAGGAAATGAGTATTTATACCCTAACTTCTTTAGTCTTTGGCTAAGAGCTGCTCTTGAGGGTATATAGGTGGCAGAGTAGGTTACAG
TGATAAGAAAAGCCCTTAGGCCAAATGGAGCTGCTGGTAGTTGGAAACCAAGAGTTGTGGTAAGGAGGGGGGATATATAGGTGGATATTAGCAGCATCCT
CTATCCCAGGCTTCTGACTGAGCATTGTGGTTCAATGGTGAGCGCATCATGGTCTCCAGAGTAGACTGACCTGTGTCCAGCACCTGGCAGATATTCCTCA
ATAGCCTTTAGTTTCATCTCCCTTTAAAAGAACGAGGAAAAATCTATCACTTTTTAAATACGTATTTTAATCTTTCTTTAAAAATCATTTCAAGCACTTT
AATCTTCAAGCATTTTTAAGCCAGCACACTTAGAGCTATACCTAAGAGGATCGTTCTTGAGGTGCCGCCTCCTGTTATGTGGCAAACGTAGTAATAGATG
TTGGGGATAACAGAAATAAAAGACATGATTCCAGCCCAGAGAAGTTCCTGGGCTAGTGGGTGATTATTAGATGGTTTATCTAGGGATCCTTTTTCAAGTG
AAAAGGGACTTGAAGTGAATCATTTAGTCAACAAAAATATGTTTGTAGGTGCTTTAGAATTTGGGTCAAACCTTTTTCAGTTTCAAACCCTAGCTCTGCC
TTGTTGGCTGAGTGACATTTGATGAAACAATATTTAGTCTGTCTGAGACTGTATTAGTTCATTTTCACACAGCTATAAAGAACTACCTGAGGCTGGATAA
TTTATAAAGAAAGGAGGTTTAATTGACTCACAGTTCTGCATGGCTGGGGAGGCCTCAGGAATCTTACAATCATGGTGGAAGGTGAAGGAGAAGGAAGGCA
AGTCTTACATGGCAGCAGGAGAGAGAGAGCGAGCGAGCGAGGAGGGACCTGCCAAACACTTTTAAACATCAGATCTCATGAGAACTCACTATCATGAGAA
CAGCATGGGGGAAACTGCCTCCATGATCCAATCACTTCCCAGCAGGTCCCTCCCTTGACATGTGGGGATTGCAATTTGAGATGATGTTTGGGTGGAGACA
CAGAGCCAAACCATATCAGAGCCTTAGTTTCCTCAATTGTAAAATGCAATTACTAATACCGACCGCATGGGATTGGGGATTAAATGTAATAACCTTAAAA
GATGGACTGTATTTGAGTAGAAGAGATCACAAAGGGATGAGTGAGGAGAGAGTCAATGGACAGGTCACAAAACTATAGTAAGACAACAGAACAAAGATGC
AAAAGTGGGTTTGCAGCTGGATCACGGAGGATGTTGAATGTCAAGCTAAAATAGGCCGTGGGGACTTTGCAGCAGACAGTGAGGTTTTAGTGTGTCTCAA
TCAGAAAGGCTGAAGAAAAAGGCCTTCAGTCTTTACACTGTCATGATATTCTTTGGTGAATGAGCTCTCCACAGGACTTAGAGCTATACCTTTAGGGAGC
TTGGTTTTCTGCATCTCTGAACCACCAACTTACAAGTCCTGCATTCATGACTAGGACCATAGAGAACCCTCTTGACATGGTGGAGAATTTGCTTATATGG
AAACCTAAGAAGTTGACCCTATTAGGACCAGTCTTGATGCTACCAGTACTGATTCTTAAAATATACATTATTTGCATACATTAGCCACCAGCCCATTTTT
AACGTTGGGTGGGGAGGCTAAGGCTCAAGAACATGGTAGTCTCTTAATTATAGGTAGATTTTGTGAGAAGACTTCAGTCCTACAGGAGTTCAGAAATTTT
CTCTTATTACCAGTGAACTTAAAGGATTGATGGTAAGACTGATGAAAGAGGACCTTCCACTTAAAAATGGGGAATGTTTGGTTTCCAATTGAGGTCTTAC
ATATGTTTCTTTGATCTTATCATAAGCTGCTCATGTTTCCCACCTGGAGAATGTGTCAGAGGAAGAAATGAACAGACTCCTGGGAATAGTATTGGATGTG
GAATATCTCTTTACCTGTGTCCACAAGGAAGAAGATGCAGATACCAAACAAGTTTATTTCTATCTATTTAAGCTCTTGAGAAAGTCTATTTTACAAAGAG
GAAAACCTGTGGTTGAAGGCTCTTTGGAAAAGAAACCCCCATTTGAAAAACCTAGCATTGAACAGGTAAAAAGATTTTAAAAGCCCTCTTTTTATTGGCT
CAAGGCTGAAGAAATCTTTTAATCCTCCTTTTATATCTCTATCTACGGCTTCCCTCCTCCATACCCAGGTTAGAGATGTTTACCAGTCTGTGGAAATTGT
CCTGGAGGCTTTGGATCAGAGGTGTATACCTAATTTAATACATGATCTAGCTTTTGCCTTTTAGGGTTGTTACATACTCACAGTTTACTGTGTGTTTGGG
GAAGAAAAACATTAAGTAGAACATGTAGTTTGTAAGAAGAACACATGAAATGTGCTTTTTCTTGTTGTTGGTGCTTTAAAATGAAGTCTTTGTCCATTTG
CTTGGCACTGTCTGAGAAAGCCTATTGAGGTGAGGGGATTTAGTAGCAATGTGAAAAACATTGTAAGTCAAGCAAAAAAAGCAAAAAAGAAATGAGATTT
TGTACCCAGAAATGGACTTCCTGCTACATTATGATTCCTGGAAAGAAGCCGTTTTACTCAGGGAATCTGTTAAAATGTAAAGAGTTTTTCTGTTAGGTGT
TGTCAGTATCTCTCATTAGCATCACTTTTTTAGCCTTTGATTGTTTGGCTAAACAAAAACACTCTGGACTGAATTTTTTGATGAGAATGACTACTGAAGT
CATGATACCAGAATCCTTAAAAATAAATGCATTTTTATCAGTCAGTTTTCAGTAAATTTTATTTTGCCTCCAAACTCTATTAAATAAGAATTCATTGCTC
TTTTATTTGAAATTAGATGAGATGGAAATATTCTGTAGAAAGATTAAATTAACAGTTTTTTTAAAAGCCCATAATTTTGAATGATATATATATTTTGGTA
AGCTTATTGACTTCAAACAAATGATAGTAAAGAGTTTAAATTTTAGTTGTTTAGTTCAGTGGTAGGCATGATAGCAGGTTTTTGATTAGCATTTTTGTAA
TGTAAAAACAATATTTATCTAAGAACTGCATTATATGTGGGCTACTCTGCTGATAGTAAAGCAATAATTATTCTGCACAACAGTCATATTTTCTTGTTTC
AGGGGTTTTGACCTTTTCAGTCCATGGTTTTGATTTTCTCCTTAATGCTTCAGGATTTCAGCAGGCGTAGAATCACAACTCACAGCCTCTCTGTCTTGTC
ACTTTTCATCCACCGTGATCTGAGGCAAGATTCCCTCTGGGGATTGCTATTTTCTTTTAGGGAAAAGGAAGAGATTTTTGTGAATAGAGAAATGTCTGTT
ATTTTGCTAATAACCACCAATCATGCTGGCTGTGTGGGTGTTCAGAATTAGTATGATTGCATAGCTGCATGAAGAAATTGCCTTCCCTCTTTTTAAGGGT
GTGAATAACTTTGTGCAGTACAAATTTAGTCACCTGCCAGCAAAAGAAAGGCAAACAATAGTTGAGTTGGCAAAAATGTTCCTAAACCGCATCAACTATT
GGCATCTGGAGGCACCATCTCAACGAAGACTGCGATCTCCCAATGATGATATTTCTGGATACAAAGAGAACTACACAAGGTAATCAGATGCAAGTTCTTT
TCCTTTGGCCCCATAAAGCCTGTTACAGACCTAAAATTGTACTTGACTCTATAAGTATAGGGCTGCCTAGTTATCATTATGACTCCATCAATTCAGAGAT
AATGTCTTTATAATTTAACTTGCAAACTCCTGCTTTTCATTGCTATCATAATATGTTGAGGTGTGAGGGATGTAAATCATCTATACCCAGTGTGATAGCC
ACTAGCTATATGAGCACTTGAAAATGTGGCTAGTTTGAATTGAGATTTCTATGATTGTACCAAAAAGGAGTTTAAAATTGCTCATTAATACTTTTAAAAT
ATTGATTACATGTAGAAATGATAGTACATTGGATACATTGGATTAAATAAAATATATTGAAGTTAATTTTACCTGTTTTTACCATTCCAGTGTGGCTACT
AGAAAATTTAAAATCCATATGTGGCTTGTGTTATTTATCTATTGAATATAGTTGACTAGATAGCTACACTATAACTCTGAAATTAATTAGAGCCCTCACT
CAAAAAATGCAATGACCATATAATGAAGTTAAAGAATTTTTTTTAGGCTGGGCATGGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGTCTAAAGTGG
GTAGATCACTTGGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAACTGGGCATGGTGTCACGTG
ACTGTAATCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCTGGAGGCAGAGTTTGCAGTGAACTGAGATCGTGCACTCTGGGCAACAGA
GCAAGACTCTGTCTCAAAAAAAAAATTTTTTTTAAAGGAAAGATTAGCTTAGTTCCAGAACTGTGATGGAACTGACATCATTATACATATTATCTTCCAG
GTTTTGTCCTTTTAAATAACATTTTACATTAGTTATAATGAAAGAAAATGTAGAATTTTGTAGCCTTTATGTCTCTTCACTTAATATCATATCAAACATT
TCACAGGTTACATTATAGTCCATTGAGTTGATTTACCACAATTTACCTAACCATTTCTCTATTGCTGGACATTCAAACTCTGCAGATAGTCTTGGATTGA
ACATATATTTTCTTCTAAAGTGGAAATTTATTTTTATTGCTTATTACTTGCAGAATAACAGAATTGGTTTTACAAATCTTAAACTTGTACCATACAAAAT
ATAAGGACCTACATTTATTTTCATCTGAAGGACTGTGACTTGGGTCATCCATTCTTTTCAACTTTTTTATAACTTTTCTATAACTTTTCTCTGTTTATAT
TTCAGAGGCACATCAAGCTTGCATTAGGGAGCTTTAGTGCCTACTTTTTTCCTGATTTAAAGTGGGCAGTAGTATCTTTTGATAGCCTGTCAAGACCACT
TGTGCCCAGGTTATTTTCTGTAACAGCAGATAACATGGAAGAATTGTATAATTTAAAATAAGCTTTCCTCTCTGACATTGACCTAGTTTCATGTGTAACA
CACCCTTTTCCTCTCTTTCTCTTCACTTTT

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.