Detailed information on TCONS_00177454

lncRNA-RNA interactions

Number of interactions: 24

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding TCONS_00177454 535 277 UTR5 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00177454 553 286 CDS Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00177454 504 265 UTR3 Trans
TCONS_00011154 SprT-like N-terminal domain novel protein coding TCONS_00177454 526 299 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00177454 633 286 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding TCONS_00177454 752 431 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding TCONS_00177454 752 431 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00177454 511 279 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding TCONS_00177454 606 291 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding TCONS_00177454 621 289 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 627 413 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 680 291 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 627 413 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 680 291 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 627 413 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 680 291 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 627 413 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00177454 627 413 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding TCONS_00177454 736 449 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00177454 627 436 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00177454 549 272 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00177454 627 436 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00177454 549 272 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00177454 657 445 UTR5 Trans

Sequence

>TCONS_00252827 (6782 nt)
CCCTGCTGGTGCTGGGAGTAGGGCGCAAGATGTCGGCGGATGCAGCTCCGAGGAGGTAGGCAGTGGGAGCCGGCGTTCAGTCCGGCCCGTGCCAACAGTG
GTTCCTCTCTCCCCCGTAGTTCGAGGAGACCACGCGCTGCCCCTCTGGCACGATCGTGGATGAACCCCCTGGCAACTGAAATGGGAAAGGCAGCGCCCCC
GACTCTGGGGACTGGACCGAAGTCCACGGTAGTGACAGCTGCCAGACCCTGAGGAGAGGACGAGAAGACCCGAGGCCTCTGCTACGAACACTGGCAGCCG
ATGGAAAATTCAGACGGATTTGGGACAGTATGCAGAGTTCTCCAAGCGACAGATTAACAGAGGCTCTTGAAGAATAACTGCGTAATCACGTGTTCTGCTC
AAAAGAAGGCCTGAATGCCCAGTGCCTTATTTGGCTTTCAGGGTTGGTGAAAGAAAAAGCAAAGTAGATGCTTTCTAATGCTAAGTCATTTAATGTAGCA
CCATTCCTTGAACTTCTTTCATCTCTAAGGTCGTCCCTTTCACCTGATGATGACCTTTGGGCCATCGTACAGGCATGTGTAAACTTGGAGATCTTCCTCA
ACATTGCACCATATCTTGGGTTCATTCAAGGCAGAGTCTCCTTGCAAAAGCATTCTAAAACAATGTAAAGTCGAAGAGAGTAGAGCAATACCTCCATAGT
TGGAAAATGTGGAGGAGGCCAATTAAGGGACAGAAAAAGAAGTGCAGAGAATCTTGGAATTGTTGCAAAATTATTCTGGAGATATTTCTAAGTCTCCTCT
ATCCTTTTCCTTAGTGATTAATACAGGTTTTTATATTAAGTGGACAGTAAAATCCAAACAGAAAGAGGTATATGTCGTATAATGAAGCCTATGTTCAAAG
TATATCTGAAATTTGTTTTTATAATGTCTTTCTTGAGAGCTTATAAAGATGTCAGTATTCTGTGGGAAACAAATTGGCACATGCATAAAAGAGAAAAAAT
GAAAAAAATCAGGCCCAACTTTCAGTTTACAGATGAGGAAACTGTGACATAGAAAAGGAAATGACAAAGATCACACTGAATCAGACCTGGGAACTGGAGC
CCAGCCATGCTCCTTGGCCCAGTGCCTCTTCTTATTCTAGGAGCTCATACCCCTTTGAAAGAAACATAATATGAATGTGTCTTCAAATGATGCTCATAAA
TCTCTTCATCATACTGAGGGAGGGAGATAAGGGGATTAGTTCTTCAGGATCTAGACAGGCTTTCAAGAAAATCTTTAGCTGGGTGCGGTGGCTCATTCGT
GTAATCCCAGCGCTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCCAGATCAGGCTGGCCAACAGCGTCTCTACTAAAAATACAAAAAT
TAGCCAGGCATGGTGGCGGGAGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAAGTGAG
ATCGTGCCATTGCACTCCAGGGCAACGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAATCATCATCATCATCATCTTAGCAGAGCTCTCGCTAAATGAT
AAAGACTTGGCAACTGATATCCTTTTTTTCAGAGAACTTAAGTAGAGACTGGATAATCACTAATTGGGGTTGTGTTTAAGGGCATTCAAACCTCTGAAAT
CTCTTCCATCTGCAGGTCTAATTATTTGGTTACTCTTTCAGTACATGTGTGCAGGAAGCATGGGGGGAAAGAAAACTAATCCCTCTCCAAAGTCTTCTTT
GAATAGGTATTATGTTTGCATTTTCATACATGTTAGTTCACTTAGTCTTCACCATAGGCTTTCTAGGTTGGTATTATTCTTAGTCTACCTAAGAAGTTCA
CAAAGGTTAGGTGACATGCTCCAAGCCACACAGATGATAGGCGGCACAACCAGATGATACTACAGGTCTCCAGATGAGTGAGCCAATGATTACATAGTTT
GTTCCCCAGCCCCTCCCCAGTGTAGGTAAAGTGCCTGCACTGCTCACTGGGTCATCAGAGCAAGTTGCTCCCACTGCCCTCTTGGTCTAACGGCTAGAAA
CAAAGCTGCAACAGAGGCCCACTCCTACTAGGAGACAGGCATTTTAATTGGCACCTCCTTACAAAGGCTCCAGTGTTCTAGAGCTTTGCATACAGGAAGA
TTCTCGTTGAACAATGAAGCCAAACCTCGCTTCCAAAATTCCCAGTTTGGTAGTTCACTGTGGATGAAGAGGCCGGAGACACCCTTAGACAAGCTGGGAC
CGTGATGATAGGAACCAGTTTGTGAAGGGAGGAGGCTGGGCTAACAGGATCTAGGGAGATAGATGATATCTGGACCTTAGGTAGTTCGTGTTACTCAAAG
TCAGCAAGGTTTTTGTTGTTTTTTGAGACAGTCTTGTTATGTTGCCCAGCCTGGAGTGCAGCAGTGCGATCTCAGCTCGCTGCAACCTCCACCCCGTGGG
TTCAAGCAATTCTTGTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCGGGCCGCCACACTTGGCTAATTTTTTGTACTTTTAGTAGAGATGGAGTT
TCACCATGTTGGCCAGGCTGGTCTTGAAGTCCTGTCCTCAAGTGATCTGCCTGCCGCAGCTTACCACAAGTGCTGGGATTACAGGTGTGAGCCACTGCAC
CTGGCCAAGATCATTTGATGTTCTTGGGTGAATGGCCACTTTCACCTGGATCCCACCAATTTTTGGTGCCCTAGGGAGCATGATCCAGAGTTCCCTCAAG
ACAGAGGATGTGCTAAAGGCAAACTCCAGAGGTCATCCTATCCCCATGCCTTCCGCCTTTCTAAAGAGAAGCTCTTCTGCCCTGCTGTTACCACTCAGTA
CTCTAGATTAAACCTGTTCCCCACGTTCATTCTGTACCCATGACTATATTTCTGCTTCCTGGAAAGTTGTAGCCATAGGAATGAAAAACTCACCAATCAG
TTGTGGTCTTCCTGAGGCAAGTCAGTCACCTTCCTACTCTGGTATCTTCCATGGCTACCAGCTGGCCACAGAACCAAGCACTGACTCACCAGCCTCCAGT
CTGGTTCCTTTTCAGCCTTTTTGCCACCCCTACAGCCCATACTACATCATCCATTCTGGCCATCTCAGATTCTTCCTTGCTAGCTCCCACCTTTCCCTGC
ATCCAGTCCTCTGTACTATTTCATCTATTTGAACACTCTTTTCTCCCTGCATCCTGGGTCTCCATTCAAATCTTCCTCTTCCCTGGAAGTACAGCTTCAG
TGGTTAACATCACAAAGCAAAGCTGACTTCAGCAAACTTTCCAAGACAACCAGGGACCAACACAGTTCAGATTAAAGGGGATAAATAAAGTGGCTTTAAG
ATCACTTGTAGTTCAGAGGTCACCCAGGGGATTAGGATCTATGCAGAGACCTGCAGAGCCACGCTGCTTCCCCAAGGGACCCCCTTCATGCTGCTGGAAC
TTGCCCTACCCCTCAGGAGAAACTGGGCTGCTGTAGCTGCGTCACGCAGGCGGCTGTGGGCCAGCCCGGAGCAAAACTGTGTTGCTTGGCATTTCTCCAC
TTCCTCTCGTGGCCGACGTCATTCTGTGACTGTGCAGGGATTCATGCTCGCCATTGCACTCCACAGTGAGATACTTGAATTGATTTAAAATTTATTCACC
CCAGTGTTCACTCCCACCTTAGCCCCATTCCATGCGCCCTTACCCTTACTCATCGCAGTATCAAAATAACTCCCAAATGGGATTGCTGTGCTTGAACACC
TCCCATCATGCCTCTTACCTTCTGCATGCATTTAGTTAGTTCCTGAAGCATACAGCCCCCTCACCTGCAAGCCCCGCCTCAGCGCACACCCTTGCCAGGT
TGGAGGAAGTCCTGGTACCCGGAGCAGTTTGCTTTGTTTTTGCAGTGTCAGTGATCTCACAAGCACTTGGTTGGCCACACAGTCCTATCGATAACTTCCA
GCAGATAACCCAAGTGGGTGACTGGGGGGTGGAAGCCAGGTCTCGGTTCCTGTGTGTGACCCAAGGCCCCCCAGCACAGGGCCCACCCTCTCATCTGGCT
CAGCCAGGTCTTGCAGAATGGGCTCTGCTGAGATCTAACCAGACACATTTGCTATCTGTTAGGTGAGCTCATTCCTGGAACCTAGCAGGTATTCCGTTCA
TGGCTGACTCTCAAGGGAATGAAGGGAAAAGGAAGAGCGGGTCTGAGATCCTTTGGATTATCTTTACGAAGCAAAAGCTTCTGTGAACTGTGATCTTCAG
AACGAATGCTGGGCCTATCCAGGTCTGTCCGCAGTACCCAAAGTCGTAGCTCCGTGATGAGCTATGATGTAGCCCAGCCACACTCAGTGACGGCTCCTGG
TTCCTCACTTGCCAGGGCAGCTTCAGTTCCTGCCGCGGTGTCAGTGCAGATTGATTCCCGCTGCGTTACTGAACGAACTCCTGACCCTGGGCTCTGAGCT
GATGAGCTGGCTCCAGAAGGTGTTAATCATCATCACTCAGGTGTGCTGTCCTCACAGAGTCCTGGTGCACCTGGGATCCCAGTAGCTCCACATTTTCTTT
GCTGCCTTCGAGGTTCACATCTTCAGGGTCCCACTATGGAGAAAAGATGCAAAGGGTAGCTGGGTGGAACGGATAGATGCTTCTCATCTGTCATAACCCC
TGACCCAAACAAAAGCTCCAATCTTGGTTCTCATGATCCAGGCACAGACAAGGACAAAAGGGTAAGGACAAGTTACCCAGGCCTGTGTTTCTGGGACCTA
AGGAGGCAAGCATAACTTTACATCAAGCAACTAATGAACAACCACCCTAAACATAACAGCTTCACTTTCCTTCCCGCCCTCATTCTCCACTCTTCTCTGC
CTCTACCAAGTCCTTATCTAGTGACACTGAGTCATGTTCTCCTTATCCTGACTCCATGCCTAACTCATTCCTGGAAAAAACCAGGCAAACTTAATCCTTT
TTTATTTTTTTAAGACAGGGTCTTGCGGTGTCACCCAGGCTAGAGTACAGTGGTGCAATCATAGCTCACTGCTGCCTCAAACTCCTAGACTCAAGCAATC
CTCCTGCTTCAGCCTCCCGAGTAGCTGGGACTACAGGTAGATGATGGGCTCCACGGGAACAGAGCAAACGTTCGCTCCTGCTCCTACACGGTGTTTCCTC
TAAACCTGAGGCTCAGCCGACTTGTCATCACTTAAAACCCAATTCAGAGCGGGGGGGCACTGCCAGTGAATAGTTCATCACCGACTCAGTTTCCCCATGT
GTATGCTGTGGTATTGGATCAGCAACGAGATAAGAAGATCTCTCCCATTTCCAAGCGTCTATGATGATTCTGAGGCACAAGGTCACATTTGACAGTACTA
GGAAACCCAGGAAACAAGAAGCAAAGATGACAAAGGCTGTGTCTGCCTGGGCAGACGATCTATTTGGACAAGATAATAGACCCAGGCATGGACATGCTCT
CCAAGAAAGATGCCCTGACAGCTGCTCACACTGAAGCTGAATCGAACATTCCAATCCTTAGAGGTTCCAGCGAAGATCTTGAAGTCTCCCTGAGCCATTG
ACACAATGGCCATGCCATCCCAGTGATAAAACACAAATTGTGGCCTTGTTTTGGACAGAAATAAAGAGCCCAGTTTGTTAGTGATTTACTGATAATAACT
GAATCGAGTACTAATACTTGGCGATTTTAAAAGCCATCATGTTAAAAAGACCACCTGATTCCCAGTGACCCTGCAGTGACTGGGTTTGGGCAGCTCGTCC
CCTGCACCTGTTTGGGGCTGTGCCAGCCACTTCCAGTGAGAACATCGCATTAACTTGCGGTCGCAGACCTGGCTGGACCCCTTGAACCAAATTCCTTTCT
GACCTTATCAGACCCCAAATAAAAGAGCTCACCAGGCCCCTCAGCCTACGTGACCCACCTGCCCAGTGAAAAAAGTAGGGCCCTGTTCTGTTCTCTGAGG
ATGGTCAGTGTGCTCTTTGATGAAAACGGTTTCTAAGCTGAGGCCTGAGACCTAGATCATTGTTCTCACAGCGTGTGCTTGACCAGCCACACCAGAAGCA
CCCAGGCTGCTGGCTAAAAACACTGATGCTGGGGCCCACCCTAGCCCCTGGGTAGGGGGTAGAGACCTAAGGTTTGGCATTTTTACAAGCTCCTAGGGTG
ATTCTTAGATGCCCTGATGATTGAGAACCACTGCTCGAGCTTCTTAAATGGCTGCTGAAGAATGATTCTTGCCAACCGTGACCAGTTCAGCAGCCTGCAG
ACAGAAACCTGTCACTTTGATCAGGTGAGCTCTTTAAACTAGTACAGGCCGGGCACGGGGACTCACGCCTGTAATCTCAGCACTTTGGGAGACTGAGGCG
GGCAGATCACCTAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACCAAAAATACAAAAATTAGCCAAGTATAGTGGTGGG
CGCCCGTAATCCCAGCTACTTGGGAGGCTGACACAAGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGACTGTGTGATTGTACTCCAG
CCTAGGCAACAAGAGCGAAACTCCATCTCAAGAAATAAATAAATAGGCTGGGTGTGGTGGCTCACGCCTGTAATCCCAACACTCTGGGAGGCTGAGGCGG
GTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTATTAAAAATACAAAAAATTAG

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.