Detailed information on TCONS_00185636

lncRNA-RNA interactions

Number of interactions: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257696 hypoxia inducible lipid droplet-associated protein coding TCONS_00185636 505 305 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding TCONS_00185636 615 299 UTR3 Trans
ENST00000379565 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein coding TCONS_00185636 584 310 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding TCONS_00185636 615 299 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00185636 560 278 noncoding Trans
ENST00000543196 polypeptide N-acetylgalactosaminyltransferase 6 protein coding TCONS_00185636 530 305 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00185636 555 308 UTR3 Trans
TCONS_00010507 SET and MYND domain containing 2 novel protein coding TCONS_00185636 552 291 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00185636 562 296 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding TCONS_00185636 601 276 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00185636 552 286 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00185636 522 277 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00185636 615 311 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00185636 615 311 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding TCONS_00185636 644 280 UTR5 Trans
TCONS_00248986 transmembrane protein 246 novel protein coding TCONS_00185636 545 307 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00185636 622 301 UTR5 Trans

Sequence

>TCONS_00252827 (3123 nt)
ATGTGGCGCGGGTCTTTGCGTCTGGCTACTACCAGACCGCGGGTTAGGGGCTTCATCTCTCTGCGTTCTCAGTTGTGGGAGGCCTTGGTGATTCGGCCAC
AGCTCAGCCTCCGTCGCTCTGTGACCTGCGGGTATTGGATGATTGGTAGCTAAGACTCCCGAATACTTCAGAAGTGGGGAAATGGAACTCTTAACATTCA
GGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCT
GGTCTCCCTGGGTGTTGCTATCTCTAACCCAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGA
CCCCCAGTAGAGACAGGATTTCGCCATGTTGGCCAGGATGGTCTCGATTTCCTGACTTCGTGATTCGCCCGCCTCAGCCTCCCGAAGTGCTGGGATTACA
GGCATGAGCCACCATGCCTGGCCTCATTCTTTAAGTTTTAATTAGGAACTTTCAAATGACTTACTTTTAAGTTTGCTTATTTTTTTTTCCTGTAGAACTG
AGTCTTCTGTTAAAGCTTGTTGTTAAATTTTTTAGTTCTATTGTGTACTCCAGCATATGTATTTGGTTCTTTTTTAAGTTTCTCGTTCTTTTTTTTTTTT
TTTTTTTTAAAGATGGAGTTTCGCTCTTGTCACCCAGACTGGAGTGCAATGGCACGATCTTGGCTGACTGCAACCTCTACCTCCCGAGTTCAAGTGATTC
TCCTGCCTCCGCCTCCCAAGTAGCTGGGATTAGTCATGAGCCACCACACCTGGCTAATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCA
GGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCTGCCTCAGCCTCCTGAAGTGCTGGGATTACAGGTGTGAGCCATTGTGCCCAGCTCTCCTTCTTT
TTTATAACTCATTTTGTTCATGCATTGTTGCAAAAAAAAATTAGTAATCTGTGTACTTTTGCATTTTATTTTTCTTTTGTTGTTTTTTTGTTTGATTGTT
TGAGATGGAGTCTTGTTCTGTTGCCAAGCTGGAGTTCAGTGGTTCAGTCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGTCTCA
GCCTCCCAAGTAGCTAAGATTACAGGAATGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGTTTCACCATGTTGGCCAGGATGGTCAC
GATCTCCTGACCTTGTGATCCATCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCTCCTCGCCTGGACTCTTATTGAGATTTTTTAAGAT
AATTACTTTGAATTCTCTGTTAGACATTTTCTAGATCTGTGTTTTATTGTTAGTTGTTCCTGGAGCATTTTTAGTTTCTTTTTGTGCTGTTAGGTTTGCC
TGATCCTTCATAATCTGTGAAGCCTTGTTTTGATGTTCTTGCATCTGAAGGAGTAAATACTTCTTTCAGTCATTACAGACTAGTTTAGGGAGGTAAATAT
CTTCTATTGGTTTTCTGGGCTGATGAGATTTTCACTAGGATCACAGTCAACTGCATTGGATCCTGGTCACGTAACTACTACTGGGTCTACAGTGAAGTTA
ATGCTTGGCAGACCTGTTATTTAAGCATCAGACAGTTGAGGATTCCATTTTCTGAGGAGACTGAACTTTCTTTAAGATCTTGATCAATAAGACTGGTGCT
GAGAAAAAAAAAACCCAGTTAATATCTGCAAATGGAGATGCTGATACAATAAATATGAGTAGGTGTGGCTCCTGCTGTTTGGCTCTTGCGAGATGTTTGG
AAATGCTCTAACCTAGTCATTGGACAGGTTTCTAGATGACCGTTACTGAGCGTTGATCACAGCTGAGAGGGTGTGAAACTAATTCATAGGGCTGCTTCAG
GATACACAGCTGAGACCAAAGTCTTCAGGTTTGTTCTGGGTTCATGACATTTCTCCCTCCAGATTTCTAGGTGGGCAGGACTTCTCCCTGCCTCTAGCTG
CCAGGGACTGGAGCTTGGTTATAGGACTGCTTCACAATTCACGGTGGGAATAAAGTCAGCCAGCATGCCTACAGGGACACATGTAGCTGTGCTTTTGGGC
AGGTCACAGGTCAGGAAAAACTCCTCCTGGATTTTGGTTGCATGGACTTGGAGCCAAGTTGTAGTGCCACGTCAAGATCCACCATCAAATAAATATTGGC
AAGCCTACATCCAGGGGCAGAGATGGATATTTCTGTCTGTGGGTCCCTGTGTGAGTAGGATTTCTTCCACATCATGACTGACATGTGCAAGGGGTGCAGT
TTGGGGTAATTCAGAGATCACAGACAGAAGCAACATCTAAAGGCCTTTCACCTGAGACACAGGACATTATGAATCCTCCTAAGTGTCTTGGCAGATGGTG
CTAGTGGCATAAACAAAACCAAATGATAGCTATGTTTACAATGAGAATTAATTACATTTCATTCTGTATTGTGGGCAAGCATGCCACTCAAGCAAGGGCA
CACCCTCTCAATACAGCCCTCCTCAGTCTTCGGTTCGCAGTCTTACACATGGATTCCAAAGTTGCCGTAAAGGTTGTTTTGTCAGGGCTTAACTGCTGCA
TTTTTGTTACTGTAGAAAGTGTGGGTAGGGAGCCTCCTATTCTGCCATCTTGCTATGCCATATGTTCCGATATGTTCTATGTCAAATTTATCTGATTACA
GATTCAGAATTTCTGAAATAAAGTACTCAGATTTACACATTGTGTAATAAGTAAATGTATTGCAATGCTTCATTCTCATTAGAGCATTTTATTAATTATT
GAAATGCATTTGCTTTTATTGCGGCGCATGGCATGTCAAAGATTCAAAATGCCAGCTCTTCATAAGTCACAGTTGAAAACTAGTTATTTAAAGGATTGTT
TTTATGATACGTCTGTATTATATTCAATATTTTATAGGTCAGAATTTTCTCTTGTTTTCAACTGTATTTTACTGGGGAGTCTCTTTTCATGTAGGTTCTC
CTTGATCATTTACTTTTTTGTGTG

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.