Detailed information on TCONS_00185636

lncRNA-RNA interactions

Number of interactions: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257696 hypoxia inducible lipid droplet-associat... protein coding TCONS_00185636 505 305 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding TCONS_00185636 615 299 UTR3 Trans
ENST00000379565 ribosomal protein S6 kinase, 90kDa, poly... protein coding TCONS_00185636 584 310 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding TCONS_00185636 615 299 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript TCONS_00185636 560 278 noncoding Trans
ENST00000543196 polypeptide N-acetylgalactosaminyltransf... protein coding TCONS_00185636 530 305 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00185636 555 308 UTR3 Trans
TCONS_00010507 SET and MYND domain containing 2 novel protein coding TCONS_00185636 552 291 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element bind... novel protein coding TCONS_00185636 562 296 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding TCONS_00185636 601 276 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00185636 552 286 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00185636 522 277 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00185636 615 311 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00185636 615 311 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, mem... novel protein coding TCONS_00185636 644 280 UTR5 Trans
TCONS_00248986 transmembrane protein 246 novel protein coding TCONS_00185636 545 307 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00185636 622 301 UTR5 Trans

Sequence

>TCONS_00185636 (3124 nt)
ATGTGGCGCGGGTCTTTGCGTCTGGCTACTACCAGACCGCGGGTTAGGGGCTTCATCTCTCTGCGTTCTCAGTTGTGGGAGGCCTTGGTGATTCGGCCAC<br />AGCTCAGCCTCCGTCGCTCTGTGACCTGCGGGTATTGGATGATTGGTAGCTAAGACTCCCGAATACTTCAGAAGTGGGGAAATGGAACTCTTAACATTCA<br />GGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCT<br />GGTCTCCCTGGGTGTTGCTATCTCTAACCCAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGA<br />CCCCCAGTAGAGACAGGATTTCGCCATGTTGGCCAGGATGGTCTCGATTTCCTGACTTCGTGATTCGCCCGCCTCAGCCTCCCGAAGTGCTGGGATTACA<br />GGCATGAGCCACCATGCCTGGCCTCATTCTTTAAGTTTTAATTAGGAACTTTCAAATGACTTACTTTTAAGTTTGCTTATTTTTTTTTCCTGTAGAACTG<br />AGTCTTCTGTTAAAGCTTGTTGTTAAATTTTTTAGTTCTATTGTGTACTCCAGCATATGTATTTGGTTCTTTTTTAAGTTTCTCGTTCTTTTTTTTTTTT<br />TTTTTTTTAAAGATGGAGTTTCGCTCTTGTCACCCAGACTGGAGTGCAATGGCACGATCTTGGCTGACTGCAACCTCTACCTCCCGAGTTCAAGTGATTC<br />TCCTGCCTCCGCCTCCCAAGTAGCTGGGATTAGTCATGAGCCACCACACCTGGCTAATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCA<br />GGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCTGCCTCAGCCTCCTGAAGTGCTGGGATTACAGGTGTGAGCCATTGTGCCCAGCTCTCCTTCTTT<br />TTTATAACTCATTTTGTTCATGCATTGTTGCAAAAAAAAATTAGTAATCTGTGTACTTTTGCATTTTATTTTTCTTTTGTTGTTTTTTTGTTTGATTGTT<br />TGAGATGGAGTCTTGTTCTGTTGCCAAGCTGGAGTTCAGTGGTTCAGTCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGTCTCA<br />GCCTCCCAAGTAGCTAAGATTACAGGAATGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGTTTCACCATGTTGGCCAGGATGGTCAC<br />GATCTCCTGACCTTGTGATCCATCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCTCCTCGCCTGGACTCTTATTGAGATTTTTTAAGAT<br />AATTACTTTGAATTCTCTGTTAGACATTTTCTAGATCTGTGTTTTATTGTTAGTTGTTCCTGGAGCATTTTTAGTTTCTTTTTGTGCTGTTAGGTTTGCC<br />TGATCCTTCATAATCTGTGAAGCCTTGTTTTGATGTTCTTGCATCTGAAGGAGTAAATACTTCTTTCAGTCATTACAGACTAGTTTAGGGAGGTAAATAT<br />CTTCTATTGGTTTTCTGGGCTGATGAGATTTTCACTAGGATCACAGTCAACTGCATTGGATCCTGGTCACGTAACTACTACTGGGTCTACAGTGAAGTTA<br />ATGCTTGGCAGACCTGTTATTTAAGCATCAGACAGTTGAGGATTCCATTTTCTGAGGAGACTGAACTTTCTTTAAGATCTTGATCAATAAGACTGGTGCT<br />GAGAAAAAAAAAACCCAGTTAATATCTGCAAATGGAGATGCTGATACAATAAATATGAGTAGGTGTGGCTCCTGCTGTTTGGCTCTTGCGAGATGTTTGG<br />AAATGCTCTAACCTAGTCATTGGACAGGTTTCTAGATGACCGTTACTGAGCGTTGATCACAGCTGAGAGGGTGTGAAACTAATTCATAGGGCTGCTTCAG<br />GATACACAGCTGAGACCAAAGTCTTCAGGTTTGTTCTGGGTTCATGACATTTCTCCCTCCAGATTTCTAGGTGGGCAGGACTTCTCCCTGCCTCTAGCTG<br />CCAGGGACTGGAGCTTGGTTATAGGACTGCTTCACAATTCACGGTGGGAATAAAGTCAGCCAGCATGCCTACAGGGACACATGTAGCTGTGCTTTTGGGC<br />AGGTCACAGGTCAGGAAAAACTCCTCCTGGATTTTGGTTGCATGGACTTGGAGCCAAGTTGTAGTGCCACGTCAAGATCCACCATCAAATAAATATTGGC<br />AAGCCTACATCCAGGGGCAGAGATGGATATTTCTGTCTGTGGGTCCCTGTGTGAGTAGGATTTCTTCCACATCATGACTGACATGTGCAAGGGGTGCAGT<br />TTGGGGTAATTCAGAGATCACAGACAGAAGCAACATCTAAAGGCCTTTCACCTGAGACACAGGACATTATGAATCCTCCTAAGTGTCTTGGCAGATGGTG<br />CTAGTGGCATAAACAAAACCAAATGATAGCTATGTTTACAATGAGAATTAATTACATTTCATTCTGTATTGTGGGCAAGCATGCCACTCAAGCAAGGGCA<br />CACCCTCTCAATACAGCCCTCCTCAGTCTTCGGTTCGCAGTCTTACACATGGATTCCAAAGTTGCCGTAAAGGTTGTTTTGTCAGGGCTTAACTGCTGCA<br />TTTTTGTTACTGTAGAAAGTGTGGGTAGGGAGCCTCCTATTCTGCCATCTTGCTATGCCATATGTTCCGATATGTTCTATGTCAAATTTATCTGATTACA<br />GATTCAGAATTTCTGAAATAAAGTACTCAGATTTACACATTGTGTAATAAGTAAATGTATTGCAATGCTTCATTCTCATTAGAGCATTTTATTAATTATT<br />GAAATGCATTTGCTTTTATTGCGGCGCATGGCATGTCAAAGATTCAAAATGCCAGCTCTTCATAAGTCACAGTTGAAAACTAGTTATTTAAAGGATTGTT<br />TTTATGATACGTCTGTATTATATTCAATATTTTATAGGTCAGAATTTTCTCTTGTTTTCAACTGTATTTTACTGGGGAGTCTCTTTTCATGTAGGTTCTC<br />CTTGATCATTTACTTTTTTGTGTG

Expression



Full and truncated open reading frames discovered in TCONS_00185636

In silico ORF/peptide predictions
>peptide 1 (93 aa)
MELLTFRDVAIEFSPEEWKCLDPDQQNLYRDVMLENYRNLVSLGVAISNPDLVTCLEQRKEPYNVKIHKIVARPPVETGFRHVGQDGLDFLTS

>peptide 2 (90 aa)
MIAMFTMRINYISFCIVGKHATQARAHPLNTALLSLRFAVLHMDSKVAVKVVLSGLNCCIFVTVESVGREPPILPSCYAICSDMFYVKFI

>peptide 3 (85 aa)
MESCSVAKLEFSGSVSAHCNLRLPGSSNSPVSASQVAKITGMCHHTWLIFVFLVETVSPCWPGWSRSPDLVIHPPRPPKVLGLQV

>peptide 4 (73 aa)
MHLLLLRRMACQRFKMPALHKSQLKTSYLKDCFYDTSVLYSIFYRSEFSLVFNCILLGSLFSCRFSLIIYFFV

>peptide 5 (70 aa)
MPTGTHVAVLLGRSQVRKNSSWILVAWTWSQVVVPRQDPPSNKYWQAYIQGQRWIFLSVGPCVSRISSTS

>peptide 6 (50 aa)
MWRGSLRLATTRPRVRGFISLRSQLWEALVIRPQLSLRRSVTCGYWMIGS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT094501 (Evalue: 2.0E-112)

Best hit to Swiss-Prot:
sp|Q15928|ZN141_HUMAN (Evalue: 3.0E-39)