Detailed information on TCONS_00189255

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000296498 protease, serine, 12 (neurotrypsin, moto... protein coding TCONS_00189255 6126 2208 CDS_UTR Trans
ENST00000296498 protease, serine, 12 (neurotrypsin, moto... protein coding TCONS_00189255 2194 781 CDS Cis
ENST00000296498 protease, serine, 12 (neurotrypsin, moto... protein coding TCONS_00189255 6786 2456 CDS_UTR Cis

Sequence

>TCONS_00189255 (4374 nt)
GGGAGTGAAACAGCATAGGCTCCGCCCCTCGCGGCGCTTCCCCCGGAATAGCGTCATCAGTTCTATAAGAGAGCGTGTGCCGAAGGCCTCGGCCTTTCAC<br />ATTCGGGAAGCGTCGGGATTAGGTGAAAGAAGCTGAGCTGAACACATTACGATGGATGATGGAAACATAAGACTATCAAGAAATCCAAGTGGTAATGGGC<br />GAAGTTTATTCAGCATCCGGCAATGGACTTATCGTAGTTGGGGAAACGGGTGTTCCGAATAATATCCTGGAAGTTATCAGGACACCTATTTTAAATATAG<br />GCCTGAATTTTGTAAAGTAATATTTAAGGTGGTCCGTGATAATTAAATAAAATGCTTAATTCATGTGGCTACTCATTGTTCCTTGACTGAGTGATTAATA<br />GACGGAAAGGTAGTTAATAGCATAATACCTCCTATTTAGTGTTACACGCTCATGTGGAAGTAGTGTGAGTACAGTTCTAAGGTAATTGCAGCCTTTGTGA<br />AAAATGTAAAATATAAAAATTACCAGGCTACCCCCAAGGGAGACAGCAGACTCTTTTTAAACCATACAAAAATTTAAGGCAGTTATACAAGGTGGAAAAT<br />TATGTATTTATTTACACAAATATGCACAGAACACTTGTATCTTTCAAAAGTCACACTTAAGACATAGTAAAAGCATGTTGTATGAACCATGTATTCTTAA<br />GGATTGAGCAAACTGCAGGCTGCTTGCTGCCTTTTAGGTTTGCTAGTCCCTGATCTACTTGAAACAGATGTTGCTTGCCCCAACACTAGTTTAATTATAA<br />GGGCAGCCTGTGAGAAAGTTTCAATAGACATTTTTCTCACCTATATTGCACGTTTTTCTGAAGCCCTTGTGCAAGTGTGTGTGCCATGTGTAGTTCTATT<br />TACATATAAACGCTACTTTAAAAGTTTATCAAAATCATGAGTTTTTACAAAAGTTTTTAATGCTCTTCTGCATTATATGCAGCATTGCAAATCTGCAAAG<br />TAGTAAAACTATAAAGCACCTTTAGGTTTGCACCAGTTATTACAGAAATGGGGATTTGTGAAAAGGATGTAATTTGATGTAGAAGGGCAAAGTCCTTTAA<br />TGACTGGCATTCAAGAGGATTACTTAAAACAATTTGTAAGTTCATGCTAACCTCTTCCCTATATTTATACTACTGGGACCTGGGGAAGGATCCATGACAT<br />GGAAGTATCTTGAGTGTGCCTTTTAAATTTGAGCATTACTGCTAAGAATGTTCTGTAAAGGTGCATAGTTAAGCAGCTATCCCTTAACTCTTGGAGAAAT<br />AGCCATAGGGAAACCAATCATTTAGGTAGGAGAACCATGGGGAAAAAAATCAGCATTTTTTCTGGAGTTTGGAATCAGTTTCACCAACTGGTCTCACTTT<br />GAGGCAAGCCTGTTTTCCCCCATTTGAAAACAAGGGCTACTACCATAAGATTTACTGGCCTTTTGCAAATTGTCAGTGATGTGCAAAGCTGCCTAATGCA<br />GTGCCTGGCATATGTTATAACTGCTGTATGTATTAGAACTTTTCAATGTGTAGGCCAGGAAAGCATTTTGACTAGTATATTTTAAGATTGGATTGTATCA<br />GGTTGGGCTTGGGAAAACCTGCAGGTATAAGTCAGTTACAGGGAAGTGTCAGTGGGTGGCACTCTTACATCATGGTCGGGGAACGTGGACTATGATGAGG<br />TGCTTGTTAAAAGCAAATATAGTAGATATGTTAATGTGTTGGATAAAATAGGTTGTATGTCCAGCTGGCATTTAGTTACCAGAAATCCTTTCAAATTTTG<br />CTAGTTTATACGCTGTAGGTAGAAAGTATTTTTATCTTATGGTTTCTGTAGCACTTGGTACTCAACAAGGATACTTGTTTCCAAATATCAGATCACTTTG<br />AGAATATATTGTGACAGGCAGATGTCCTTGAGGCTTTACTACTCCTATTCAGGCCTAAAAGTTTATAGTGGAATTCTTTAACCACTGATTTCCTCACTTG<br />ACAAAGGCTACAGAGAATATGAAGATTTCTTGTCAAGTCTTTTGAAAAGACCTAAGCATAAATATGCCACTCATGAGTGTAGTAAAGGGTACCGCATTTA<br />TGTCAAATGTGGGTATTTAATATGATTTCAGACACCACTGATTCAATTAAAAGGGGTTCTCAGTTCAAATGTAAAAATGATCTTTTGTAAAATCAGCATA<br />GAATGATTTTGAGAAATAGGTAGGGGATAGATGAGGCTTAGAATAAGTCACTCCAGTGAAATTAGGGTAGAAAATGTTCATTTAAGGATTATCACTTCCA<br />CTACACTGAGGCCTCTGAAAATGTTCACAAATTTCTCAAAAGCAGCAGGGGGTACACAATTTTTTACCACAACACAAAGCAAAAACAGATCTTGCCATTT<br />GTTGTCATCTCTGCTGAGTGCTAATAGTGGGGGTTCAAAGTTTTCCATTTGTTTAAATGCTGCTTTGAAGTTTCCATGAAGAATTACAGTTTGGTGACAC<br />TTTTTATCCAAGGTACAAAGGCTGAGACTTTGGTATAAACACCAGGAGAATCCTTGACTCCACAGCCATACCCCCAGGAGGTCACCCCATACACCACCCA<br />GCTCTCTCCGGGCCGTTCACACATGAGTGGTCCTCCGCTGTCTCCCTGGCAGCTGTCCACGCGTTTGTGTTCATGGAGGTTTCCAGCACAAAGCATTCTC<br />CCTGTAAACCGACCCTTATAACGTTCTTCACAAAACCTTTTAGGAAGTAAGGGAATGGCTGCTTGTTGTAGTGTTCTTGAATAGGCTCGTCCTACTCAGA<br />CCAAACATCTGATTAGTGGCATTCCAGATAACCATCGCAACATTTAACAGTTACTGAGCATGTAATAGTTATGAAAATAAAATCCCTGTTGTGGCATTAG<br />TGTAGTTTAAAATGAGCAATGACTAACTGGTATGTACTATTGTTAGCTGCCTTTTTTAATGTTGACACAATCTTAACCTTCACAAATTTCTCAGTACTGA<br />ATTGTCTGAGGAATAATGAATAACATTTATGGATTTGTAGAGTAAGGTGACCTAAGAAAGCATATTTGTGCAGGCTTTCGTATTTGAATTCTGTATATTA<br />AAAAGCATAGAATGCATTAATGCTGGTTTCGCATTAGCACATCAATTCATATCTACTTCACTGAATTAAACTGAGTTCTCAGTTTATGCTAAAGTTCTCA<br />TTAGAACCAACAATACCTCCAGAATATAAGTCTCAATTACATGCATGCATTTCACACTAAGCAAAATTTCTCCAAATAAGTCTGAATCCATTTAAGATCT<br />TATTGCCCATTGCACACCCAAATATATGGATAATACCAGACACAAAAAGGTGCCCTGCTTTTTTTGATTATGCCTTACCTGTGTCACCCCATCCTGTTAT<br />GTAACAGTTGGATGCTGTTTTCTGTGGCCTCTCTCTCCAGAGTGGTAAACAGGCTGGCAAAACATGGCTGCTGAATCTGGCACATTGCTCTTCTGGTCCT<br />TGTAATCTAACCAGGGCTATGTCATAATCACTGCGGTCGGGTCGATACTCCCGATGAATCACAATCTGTTGAACTCCAATTTCTTCCTCAAACTCCTCTG<br />GTACCAGAGTATGATAATCTCCAACCCTAACAGCATAGCTCCTAGTGCTGTTGCCATACCTGAGAGGCAGAGAGTACTAATGAGAGACTTGCTTCAGATA<br />CTGAAAATTATTGTCAAGAAGGAAGACTAATGAAGATACAAGCCTTTCTTCCAAATCATCAGCCCCTTTTGTAAATTCAACCTTTCTTTCCATTTATCTG<br />ACCCACCATTCCTGATCCTCTACTGCAAACCCATTGTCATAACCTCATCTTCATTTCATTATGTAATCTGTTCTCCAAGAAGGAGCAAATGTGGAGGATG<br />AGTGGAAAATAAAGACTAATCATTAATCTGTCATTTCCCAAATGAAAAGCGATCAAAACAGGAATAGGTCAAAATTATTGTCCTGTGTTGTTGCCCTGTT<br />ATTTCCAAGAATTGTTAGTTTGTCATGAAGCTCTGTGAGGGCAGAAACTAACTTTGTGTCCCTCAAAGTACTTAGTACAATCGACTTCACTCTTGCAAGG<br />TGGACTTAAACTACTTCCCTTTCCTCTAAAGTGAATGCAAACCCAAACTATACTTTCAGATAAACATATATTCCTTCTATCCTTTCCCCTCTTTTAAATC<br />TTTATTCAGATGTCACCTCAATGAAGCCTACTTTGACACCCTCGTATTTAAAATTGCAACCCATCTTTCTTTTTCCTCCCATCATCAAACACTCCCAATA<br />TCATTCATCTCTACTTTTCCTCGTTTTTAAGCATCACTTTGTAACAAAACTATCTAATTTACAATTTATTGCAT

Expression



Full and truncated open reading frames discovered in TCONS_00189255

In silico ORF/peptide predictions
>peptide 1 (82 aa)
MRLRISHSSEIRVENVHLRIITSTTLRPLKMFTNFSKAAGGTQFFTTTQSKNRSCHLLSSLLSANSGGSKFSICLNAALKFP

>peptide 2 (58 aa)
MNHNLLNSNFFLKLLWYQSMIISNPNSIAPSAVAIPERQRVLMRDLLQILKIIVKKED

>peptide 3 (51 aa)
MKPTLTPSYLKLQPIFLFPPIIKHSQYHSSLLFLVFKHHFVTKLSNLQFIA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT097972 (Evalue: 9.0E-153)

Best hit to Swiss-Prot:
sp|P56730|NETR_HUMAN (Evalue: 3.0E-58)