Detailed information on TCONS_00189783

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00189783 551 298 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00189783 604 294 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00189783 604 294 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00189783 522 290 UTR3 Trans
TCONS_00116334 low density lipoprotein receptor class A domain containing 4 novel protein coding TCONS_00189783 869 773 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding TCONS_00189783 634 294 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00189783 551 298 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding TCONS_00189783 533 295 UTR3 Trans

Sequence

>TCONS_00251973 (5234 nt)
CACTATGTTGCCCAGGCTTGTCTCCAACTCCTGGACTCAAGTGACCCTCCTGCCTTCACCTCCAAAAGTGCTAGGGTTACAGGTGTGAGTCACCGCGCCC
AGCCTATCATTTCCTTCTACAACATCGACACCCCCTTGTCCTGTCCTCTGGTCACATGGTGGCACTGCATTCCTGACCCAGCCCTGGGATCAACCCCTCT
ATGCTCACTTTTACTTTTTATTACTATAGCAACAACAAGGGCTATTATTATTAATTAAAATTTATTGAACACATACCATGTGTCAGGCAAGTAGATTACT
TTCTGTTTAGAAAATGCCATCACAAAGGGGACAGCACATGCAAAAGACAATGATCTGAATCTGCAAGTGGGGAAAAAACTAAAATGGATTTTCAGTTGTT
TGAAATAAAATTCCTTGCCATCGGCATTTGCTCAATATTGATAAAGGGAAGATTCAGGTCCCTTTGTAAGAGAGAGAGGGAAAAAACAGAGACATCGATC
GAATCCATACTGTGAAACTATGCAGTAGGTATTGACCCATCATTGCTCTCAAACAGTGGAAAAAGACTGAGATGAATTTGCTTTGTGGAGTAGCCAATCA
CTCAGGTGGCTGAGTCACAAACAAGATTTAATATCTGATTGCTGCACAAAAATGTCTACAAAGAAGCTCCTGTGGAAGATATTTTTCCTCACCCATTCAA
GGTTGCAGAGGTAGTTCTCTTTGTGATTTGTGAGTGGTGTAGGAGTGTGAAGAGTATAAATTAGAGAAGAATATAAGGAAGTTTGCTGTGTGTTTAGCAG
GAACTGCAACCTAAGAGAATCAAGATCCTGCAGCCGAGAAGAGAACTGGGATCCAAAAGGTCACATTAAAACAGGTTAAGTGTTTGCAAATCCCAATTAC
AATAGGTGCCGTTAGCTATTAAATCTTATTGATCGGCCAGGCGCAGTGGTTCATGCCTATAATCCCAGCATTTTGAGAGACTAAGGCAAGCAGATTGCCT
GATGTTAGGAGTTTGAGACCAGTCTGACCAACGTGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGGCGTAGTGGCGTGCGCCTATAATCTCAG
CTACTCAGGAGGCTGAGGCAGGGGAATTGCTTGAACCAGGGAGACAAAGGTTGCAGTGAGCCAAGATTGCGCCACTGTACTCCAGCCTGGGTGACAGAGC
GAGACTCTGTCTCGAAACAAAAACAAAAACAAAACAAAAACCTTACTGATCAAATAGCTAAGAAATAAAGAATTTCCTCCATTCTTTGCTGAGGTGGGAA
GAAACAGCTGCTGGAATGAGTTTGCAGATGGGGAGAAAAGTGGTTCTTAAAAACTCAGGAACTATGGTGTACCCTTTCGTGTGCCGATTAAAATGAAAAC
ATGAATCCCGGTCTTCCCTGGCCAATGGGAACACTACAGGTGGGGAGAAAGAACCTCCTCTCTTTATGTTTCTGTAAATCATCCTGCCTTACTTTGAACC
CCTGTGCCTTCAAAAAGGGAGGACTTTGAGCCCCTGTGCCTTCAGAAAGGGAGGAAACTGTCCTTAAAAGAGCTCTGCTATCTCCCTGGAATTTATGTCA
TGACTATGACATAAAAAATTTGCCCAGTGCTAAAAATTCAGGACATGGCATCTGGTGATTGAGTCACTTACCCACACAGGTTAGCAGTAAGACACTCATT
CTGTATTTTAGCACAGCCCTGGAGCTCCGGTGGCTTTGTGACGCCATGGCGTGGTCTCAATTTCTGAGCTGCACACAGAGCCACTTCTCCTCCCGGGATC
TTGCCACTTCCTTGTTTGCACTGCACAGAAAGCACACAGCAGCTACTCACCTTCTCATTTCCTGCAGGTTTGGAGAATCCTTGTGGTGGGGCTTTTAGTT
GTCTCCTTGTTTCTTACAAGTATTTTGTTGACACCACATTATCTTCCTTCTCTGGAACTGGTGTATTCAGGATTCCCAAGCCCAGGAAACTTAGTGCTGC
TTTTTTTTCCCTTATGGTTACTACTCAGAAGCAAGAGGCAAGAGGCAAGAAATGCATGATTGAGTACCTGCTTGATTTAGGAGGGGAGAGGAAAAGAAAC
AGGTTGAATTTTAAAAATGTTATTGAGTTGGCTGGGCACAGTGGCTCACATCTGTAATCCAAGCACTTTGGGAGGCTGAGGAGGGTGGGTCACCTTAAAA
TCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTATCTACTTAAAATATAAAAAATTAGCTCAGCGTGGTGGTTGGTGCCTGTAATCCCAG
CTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCACACCATTGCACACCAGCCTGGGCAATAAGAG
TGAAACTTCGTCTCAAAGAAAAATGTTATTGAGTCACAGTTGTGTCAGAGTTCTCAAAATGCAGAAGCCAGCTTTCTAATGCTGTGGCCTCTGTCCAGGA
CAGATATATACCATGCAGATGAGAGAGGACCCAGTGTAGTTCTTAAAAATTTCAGTGCATGAGACCGAACACGCAACCACCACTTCTCACCATTTCACTC
TCTGGCCAATTTGTTGGTTTTGTTGCTGTTGTGACTTCTTGTTAGTGATACAGGCATTTGCCCATACACACCATTTTAAGAATTCCTGGCACAAAGAGAT
GCTTAAGAAATATTACGTGATGTTTGATATAGTTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTATAGTTCTGATAATCCCCATGTGTCATGGGAG
GGACCCAGTGGGAGGTAATTGAATCATGGGGGTGGTTTTCCCTGTGTTGTTCTTGTGATGGTGAGTGAGTTATCATGAGAGCTGATGGTTTTATAAGCCT
CTGGCATTACCCCTGCTGGCTCTCATTCTCTCTCTTGCTGCCCTGTGAAGAGGTGCCTTCTGCCATGACTGTAAGTTTCCTGAGGCCTCCCCAGCCACAT
GCAATTGTGGGTCAGTTAAACCTCTTTTTAAATAAATTACTCAGTCTTGGATATTTCTTCATAGCAGCATGAGAACAGACTAATACAGTAAATTGGTACC
AGGAGTGGGGTGCTACTATAAGGATACCCCAAAATGTGGATGCAAATTTGGAACTGGGTAACAGGCAGAGGTTGGAACAGTTTGGAGGACTCAGGAGAAG
ACAAGAAAATGTCAGAAAGTTTGGAAATTTCTAGGGATTGGAGGGCTCAGAAGACAGGAAGATGTGGGAAAGTTTGGAACTTCCTAGAGACTTGTTGAAT
GGCTTTGACTAAAATGCTGATAGTGATTTGGACAATGAAGTCCAGGCTGAGGTGGCCTCAGATGGAGATGAGGAACTCGTTGGGAACTGGAGCAAAGGTG
ACTTTTGTTATGCTTTAGCAAAGAGACTTGCAGCACTGTGCCTCTGCTTGAGATCTGTGTATCTTTGAACTTGAGAGAGATGATTTAGAATATCTGGCAG
AAAAAATTTCTAAGTGGCAAAGCATTCAAGAGGAAGCAGAGCATAAAAGTTTGAAAAATTTGCAGCCTGACAATGCGATAGAAAAGAAAAACCCATTTTC
TGGAGAGAAATTCAAGCTGGCTACAGAAATTGGCATAAGTAATGAGAAGCCAAATGTTAATCACCAAGACAATGGGGAAAATGTCTCCAGGGCATGTCAG
AGACTTTCACAGCAGCCCCTCCTATCACAGGCCCAGAGACCTAGAAGGGAAAAATGGTTTCATGGTCTGGGCCCAGGGCTCCCCTGCTCTGTGCAGCCTC
AGGTCATTGTACCCTGCATCCCAGCCCCTCTAGCTCCAGCCATGGCTAAAAGCGCCAAGGTACAGTTCGGGTTATTGCTTCAGAGGGTGCAAGCCATAAG
TCTTGGCAACTTCCACATGGTGTTGAGCCTGTGGGTGCACAGAAGTCAAGAACTGGGGTTTGGGAACTTCTGCCTAGATTTCAGAGGATGTGTGGAAATG
CCTGATTGTCCAGGCAGAAGTTTGCTGCAGGGGCAGAGGCCTCATTGAGAACCTCTGGTAGGGCAGTGTAGAAGGGAAATATGTAGTGGGTGCCCCCACA
TAGAGTTCCCACTGGGGCACTGCCTAGTGGAGCTGTAAGAAGTGGGCCACCGTCCTCCAGACCCCAGAATGGTAGATCCACAACGACAGCTTCCACTGTG
CACCTGGAAAAATCGCAGACACTCAATGCCAGCCTGTGAAAGAAGCCAGGTTGGGGGATGTTCCCTGCAAAGCCACAGGTGTGGAGCTTCCCAAGGCCAC
GGGAGCCCACCTCTTGCAACAGCATGACCTGGATGTGGGACATGGAATCAAAATAATCATTTTGGAACTTTAATATTTAATGACTGCCTTGCTGGATTTC
AGACTTGTATGGGTCTGTAGCCCCTTCGTTTTAACCACATTTTCCCCATTTGGAACAGGTGTATTCACCCAATGCTTATAATTGTATCTAGGAAGTAACT
AACTTACTTTTGATTTTACAGGCTCATAGGTGGAAGAAACTGGTCTTGTCTCAGATGAGCCTTTGGACTTGGACTTTTGGGTTAATGCTAGAATGAGTTA
AGTCTTTGGGGACAGTTGGAAGGGCATGATTTTGTTTTGAAATGTGAGGACATGAAATTTGGGAAGGGTCAGGAATGTAATGATGTGGTTTGCCTTTGTC
CTCACCCAAATTTCATCTTGATTTATAGTTCCCATAATCCCTACATGTCACAGGAGGGACTAGGTGGGAGGTAATTGAATCATGGGGGCAGTCTCCCCCA
TGCTGTTCTCATGATGGTGAGTGAGTTCTCATGATATCTGATGGTTTTATGTGTCTGGCATTTCCCCTGCTGACTCTCATTCTCTCTCTTGCCACCCTCT
GAAGAGATGCCTTCTGCCATGATTATAAGTTTCCTGAGGCCTCCCCAGCCATGCAGAACTTCCAGTGATTCAAGTTTGACACACCACACCACGGTGGATG
TGCCTTGTCATGACACATCTCAGCAGCACTAGAAGATACATCCAAAGTCCTGTGAGCAAGGTCTGTGGTATCTGTTTATTATGGCAGCCCAGTAAGACTA
AGACAGGCCATCACAAGACGTGAACGTTTTGGACCTTCTCTTGGGCCCTAGTAAACAGAAATCAGAAGGAAGAAAACTTTGCTAATGCTCTGCCAAGCCT
CACTTTTCTCTCATGATTAGAAGGTTTGATGTTAT

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.