Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000232564 | guanine nucleotide binding protein (G protein), beta polypeptide 4 | protein coding | TCONS_00191972 | 508 | 305 | UTR3 | Trans | |
ENST00000263955 | serine/threonine kinase 17b | protein coding | TCONS_00191972 | 591 | 283 | UTR3 | Trans | |
ENST00000330676 | TLC domain containing 2 | protein coding | TCONS_00191972 | 621 | 304 | UTR3 | Trans | |
ENST00000357613 | transmembrane protein 170A | protein coding | TCONS_00191972 | 615 | 280 | UTR3 | Trans | |
ENST00000450928 | antisense | antisense | TCONS_00191972 | 536 | 284 | noncoding | Trans | |
ENST00000475187 | THO complex 5 | retained intron | TCONS_00191972 | 555 | 285 | noncoding | Trans | |
ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | TCONS_00191972 | 526 | 282 | noncoding | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | TCONS_00191972 | 600 | 283 | CDS | Trans | |
ENST00000498813 | delta(4)-desaturase, sphingolipid 1 | processed transcript | TCONS_00191972 | 557 | 303 | noncoding | Trans | |
ENST00000568559 | transmembrane protein 170A | nonsense mediated decay | TCONS_00191972 | 615 | 280 | UTR3 | Trans | |
ENST00000569540 | transmembrane protein 170A | protein coding | TCONS_00191972 | 615 | 280 | UTR3 | Trans | |
ENST00000604000 | Lix1 homolog (chicken) like | protein coding | TCONS_00191972 | 637 | 282 | UTR3 | Trans | |
ENST00000620139 | melanoregulin | protein coding | TCONS_00191972 | 529 | 302 | UTR3 | Trans | |
TCONS_00008758 | flavin containing monooxygenase 4 | novel protein coding | TCONS_00191972 | 514 | 299 | UTR3 | Trans | |
TCONS_00010841 | epoxide hydrolase 1, microsomal (xenobiotic) | novel protein coding | TCONS_00191972 | 533 | 299 | UTR3 | Trans | |
TCONS_00070307 | pecanex homolog (Drosophila) | novel protein coding | TCONS_00191972 | 612 | 283 | UTR5 | Trans | |
TCONS_00083866 | RAB27A, member RAS oncogene family | novel protein coding | TCONS_00191972 | 620 | 283 | UTR5 | Trans | |
TCONS_00098745 | transmembrane protein 170A | novel protein coding | TCONS_00191972 | 615 | 280 | UTR3 | Trans | |
TCONS_00116668 | desmoglein 3 | novel protein coding | TCONS_00191972 | 559 | 303 | UTR3 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | TCONS_00191972 | 620 | 282 | UTR3 | Trans | |
TCONS_00140732 | NCK adaptor protein 2 | novel protein coding | TCONS_00191972 | 607 | 302 | UTR3 | Trans | |
TCONS_00141667 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00191972 | 618 | 302 | UTR3 | Trans | |
TCONS_00141670 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00191972 | 618 | 302 | UTR3 | Trans | |
TCONS_00141673 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00191972 | 618 | 302 | UTR3 | Trans | |
TCONS_00141679 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00191972 | 618 | 302 | UTR3 | Trans | |
TCONS_00141681 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | TCONS_00191972 | 618 | 302 | UTR3 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00191972 | 633 | 282 | UTR3 | Trans | |
TCONS_00152102 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00191972 | 502 | 316 | UTR3 | Trans | |
TCONS_00152103 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00191972 | 502 | 316 | UTR3 | Trans | |
TCONS_00152105 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00191972 | 502 | 316 | UTR3 | Trans | |
TCONS_00152107 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00191972 | 502 | 316 | UTR3 | Trans | |
TCONS_00153158 | serine/threonine kinase 17b | novel protein coding | TCONS_00191972 | 591 | 283 | UTR3 | Trans | |
TCONS_00185321 | transferrin receptor | novel protein coding | TCONS_00191972 | 607 | 289 | UTR5 | Trans | |
TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | TCONS_00191972 | 607 | 284 | UTR3 | Trans | |
TCONS_00205414 | prolyl 4-hydroxylase, alpha polypeptide II | novel protein coding | TCONS_00191972 | 515 | 289 | UTR3 | Trans | |
TCONS_00226586 | diacylglycerol kinase, beta 90kDa | novel protein coding | TCONS_00191972 | 523 | 298 | UTR3 | Trans | |
TCONS_00226588 | diacylglycerol kinase, beta 90kDa | novel protein coding | TCONS_00191972 | 523 | 298 | UTR3 | Trans | |
TCONS_00235205 | epithelial splicing regulatory protein 1 | novel protein coding | TCONS_00191972 | 603 | 281 | UTR3 | Trans | |
TCONS_00235219 | epithelial splicing regulatory protein 1 | novel protein coding | TCONS_00191972 | 603 | 281 | UTR3 | Trans | |
TCONS_00235231 | epithelial splicing regulatory protein 1 | novel protein coding | TCONS_00191972 | 603 | 281 | UTR3 | Trans | |
TCONS_00237103 | cathepsin B | novel protein coding | TCONS_00191972 | 606 | 295 | UTR5 | Trans |
>TCONS_00237103 (4015 nt)
AAACAACGTTGCCACACGCGGAGAGCACGGAGATTTCTGGGGCTTTGGAGGGAATCGTGAGCGGGCGGGAGGAGGCCGGGGACCACACAGAGAATAACTT
GTCTGACTACCAGTATTCTTGGATGCAGAAGTGCTGAAGATGAGCACACACACGTACGGAGAATTTCTGGAGAATTCAGCTGCTCAGAACAAGAACTGAG
ATCCAGAGAGATGATGACTTTGCCCATAGACCAAACAAAGAAATACATGTTTCAGTCCTGTGTCCTCCTGCTATGTGTGTCCGGAATTGGTGGGTTCTTG
GTCTCACTGACTTCAAGAATGAAGCTGCGGACCCTCGCGGACCGTGTGTGAATGCCTGCTCTGTGAGCCCTCAGAATCTACTGGCTGAATGAGTGCGTGG
AGGAAATGTGCTCAGAGCTGCTGTGTGTCATCCTGTGTTTGAAGTGCTCCTGCAGCTATCATTCATCCAGTTAAGAATTTGAAGAAGTGTGTGCACAAAG
GATGTACCAGACTATTAATATTGGTGACCATGGGCTAGGGAGTATGTTCTTGATAAATTTACAAAATCTTCTGATCAACTATAGACTTTAAAAATATAAC
ATCAATTTTTTAATAAAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATGTATATATATTTGCTT
TTTTTTTTTTTTTTTTTTAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTACCTCCTGGATTCAA
GCGGTTTTCCTGCCTCAGCCTCCAGAGTAACAGGGATTACAGGCATACTCCACCTTGCCCTGCTGATTTTGTATTTTTAGTAGAGACAAGAGTTTCACCA
TGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCGCCTGGCCAA
ATGCTCTACTTTTTAATCAATGTTTTCCAAAATAGGGATTTTTGCTATGTGCTTTAGAAATTAGAGAACAAACGGTGATAATATATGCTAAACTTAAAAT
TAGTATGCCTCCTTTTATAGACAACAAGAACTTTGTCACTTCCCAGTTTGTCTTGTCATTCAGGAGGCTCAGAGCTACGATCTGTGCCCACTCGTGCTGC
CTCTTCTTAACTTTGATTTCCTGAAGCAGCGATTTCATCTCCGTTTCCCCTCATCACCTGTTCTTTTAACTGTTTAAAAACAGCATTACATGTTGTTGCA
AGTGGCCTCAAATTCTTTTTGGTAGAAGGGAAATTGTAATCCATGAGAAGAAAAAAATTTTCCTAACTATTCTCAGGTGTGTTTAAGGGCTGCATTCCAT
GATGCTATCAGTGCCTTCTTTCAGCTCACAGGATATCGGCCATGTTAATGAGTCTGATGTTGCTAGTATCACAGGCACCGGAAAATATGCACATTATGCT
GGAGCATTAGAATGCAACAGAAAGAGCCCTGGGCTTGGAGTATGCAGAACTGGTTCTTGTTACAACTCCTCTTACTAGTGGGCTCTGGAAGAAAACACAT
TGAATTCATGATCATGGTTAACCTTTGGAGAGAGAGAGGAGACCAGGATGAAGGAGCCAGTCGAAGATCCTGTTCAAGTGTACACTGAGCCAGCAGGTTC
ACCAGAAAGCTATTGAGCGTTTGCTGGAACACATTATGCAGGGTGAATTTCTTCTGGAATGTTGCCAAGGATTTTTTATGCTTCTGTGGCAGGCATTTCT
TGAACATTGTCATTTAGCCAAGCAAAGAAGATTTTCTTAAAGGATAGAAAATGTTTAAAAATTTTTGTTTGTTTGAAGATAGGTTAAATGGCTATATGAT
CTCAGGATAAGACAGAGAAAATCACTTATTTCTCTAAGTGATCTGATTAGGTTAGTGATGTTTTGCCTTTAAACAGATTCATCATTATTCCTAAAGTATT
GCTGTATTAATACTGTCTTCTAGAAAGTATCCACCAGTGCCTACTTTTCTTCGATATCATTAGCTGTTTTTCGAAACTGAATTTGCTCTTCAGAGATTTC
TCATATGTTTGCGTATAAGGAACTACTGGTAATAGCCAAGAAAATTTGGAGGTGCAGAGAACATGCTGAAACAGAATTTTTCACTTTCAATTCTAGAACT
ATGCCATAAAAAAAAAGGAAAATGTAAAAATGTCTTTATATTAGAGCAGATATTTTAAAAGTATTGCAAATTCAATGATAAATTCTAAGGTTAAAATTGG
ACACATAAAAAATACAATATATAAATATCTCCCCAGAAATTATTATCTAATGAATAGTAAAAGCTGACTACAAACCATGTCATTTTAACAAGGGTTTAAA
TAGTACCAAGATTCTCATCATATGCTCTGGGATACCCAGTGATGTACAAGGGTTCTCTCTAAACATGGGGAGGAAAAATTTCAAATATAAAGATTTGAAT
CTTGTCTTTGCCATTCACTAGCTGTGTGATCTTGGGTAAGTTACCTGGTTTCTCTGAGCTTCAGTGTCATCTGTAAAACAGGAATAATAATACCTAGCTC
AGAGGCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACTAGGTCAGGAGTTTGAGACCAGCCTGGCCAAGAT
GGTGAAATCCTGTCTCTACTTAAAAAAAAAAAAAAATAGCCAGGCATGGTGGCAGGCACCTGTGATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCG
CTTGAACCCGGGAGGCGGAGGTTGCAGTCAGCTGAGATCTCGCCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTCCGCCTCAAATAAATAGGTAAAT
AAATAAATAAATAAATAAAAGTAAATAAATAAATAAATAAATAATAATACCTAGCTTATGGGGCTGCTGTGGGTGTTTGTAAAGTATCTCAATGGTGCCT
ACATATTGTAAAGGCTTATGAATATATTAGTTCCTTTCTCAACTTCCTCAATTCATTCCACCACTACAAGTCAATCTAGAGATTAAAATAGGCAAAACTG
TGATCTACGTTAGGATGGGGTTGTTTGAGTGGTGGTTTATTTCTGACTGCTTCATTTTATACTTGTATTTTAAATATACAAGTTTTTGTAAACATTCCTA
AAACAAAACAGATCTGTTTTTATTTTGAAGAAGATCGGACAGATTCTGATATAATGTTTGGAGAACTAAATTATACACAGAATTTTGTCTCTGAAGAGTT
AACTCTATCATGAAAATGCACTCAGTGAAAAGCAAACATCATGCCACCTTTCCATACACGGTATTATGTGTATTTGAATGAACGCATATGGAAAAACATG
GCAATTCTTCTTTTATGCCTAAATCCTATGGAATTTGCCGGCTCCTGTATTTAAGTCTGGGCTGTGATGGTAAACTTGGTTCCTGTCAACTGAGTGTTGT
TATGTCTTTGGCACATTCCCACAGCCGAACCTCCCGTCTGTAACCTGCACCTGCAGTTCACAGGATTCAGCTCGGAGAGCTCTGTACTTCCGGGCCACTC
AGGTACTTGTTAGTGCAGACTGTAAGTTTCTACCCCACAGTTTCTCCACCAGTTTAGATACTGCAAACATTTGGGTTTTGCAGTTTCTGCAATTTTTGTT
TGGGTTCTTTAAAAACAGCTCTTCCCCCACCCCTGGCACACCACCATCTCTCCAAGGCACTCATTGTGAGATGGGAAGCCTGGCGCCTGTCGTTTGTATT
CCAGATCGAAACTAGCAGAATTGAGATTTTCCTCCCTTTTTAGTGCCATGACAAACAAAAGAGGATATGACATGTATTTATTGTTTGGTAAAATGCAGAA
GTATCAATTCCAGGAGACGCTGCAATTCCTTCATCTTTGCCTTGAGTTGTTTATGTGAACTATGGCCCTGTTTGTAGGAGACAGAGAGAAAGTATGAATT
TGGTGGGAATGACGGG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.