Detailed information on TCONS_00191972

lncRNA-RNA interactions

Number of interactions: 41

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000232564 guanine nucleotide binding protein (G protein), beta polypeptide 4 protein coding TCONS_00191972 508 305 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00191972 591 283 UTR3 Trans
ENST00000330676 TLC domain containing 2 protein coding TCONS_00191972 621 304 UTR3 Trans
ENST00000357613 transmembrane protein 170A protein coding TCONS_00191972 615 280 UTR3 Trans
ENST00000450928 antisense antisense TCONS_00191972 536 284 noncoding Trans
ENST00000475187 THO complex 5 retained intron TCONS_00191972 555 285 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00191972 526 282 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00191972 600 283 CDS Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript TCONS_00191972 557 303 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00191972 615 280 UTR3 Trans
ENST00000569540 transmembrane protein 170A protein coding TCONS_00191972 615 280 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding TCONS_00191972 637 282 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00191972 529 302 UTR3 Trans
TCONS_00008758 flavin containing monooxygenase 4 novel protein coding TCONS_00191972 514 299 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobiotic) novel protein coding TCONS_00191972 533 299 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding TCONS_00191972 612 283 UTR5 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding TCONS_00191972 620 283 UTR5 Trans
TCONS_00098745 transmembrane protein 170A novel protein coding TCONS_00191972 615 280 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00191972 559 303 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00191972 620 282 UTR3 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding TCONS_00191972 607 302 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00191972 618 302 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00191972 618 302 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00191972 618 302 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00191972 618 302 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00191972 618 302 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00191972 633 282 UTR3 Trans
TCONS_00152102 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00191972 502 316 UTR3 Trans
TCONS_00152103 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00191972 502 316 UTR3 Trans
TCONS_00152105 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00191972 502 316 UTR3 Trans
TCONS_00152107 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00191972 502 316 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00191972 591 283 UTR3 Trans
TCONS_00185321 transferrin receptor novel protein coding TCONS_00191972 607 289 UTR5 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00191972 607 284 UTR3 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding TCONS_00191972 515 289 UTR3 Trans
TCONS_00226586 diacylglycerol kinase, beta 90kDa novel protein coding TCONS_00191972 523 298 UTR3 Trans
TCONS_00226588 diacylglycerol kinase, beta 90kDa novel protein coding TCONS_00191972 523 298 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00191972 603 281 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00191972 603 281 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00191972 603 281 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding TCONS_00191972 606 295 UTR5 Trans

Sequence

>TCONS_00237103 (4015 nt)
AAACAACGTTGCCACACGCGGAGAGCACGGAGATTTCTGGGGCTTTGGAGGGAATCGTGAGCGGGCGGGAGGAGGCCGGGGACCACACAGAGAATAACTT
GTCTGACTACCAGTATTCTTGGATGCAGAAGTGCTGAAGATGAGCACACACACGTACGGAGAATTTCTGGAGAATTCAGCTGCTCAGAACAAGAACTGAG
ATCCAGAGAGATGATGACTTTGCCCATAGACCAAACAAAGAAATACATGTTTCAGTCCTGTGTCCTCCTGCTATGTGTGTCCGGAATTGGTGGGTTCTTG
GTCTCACTGACTTCAAGAATGAAGCTGCGGACCCTCGCGGACCGTGTGTGAATGCCTGCTCTGTGAGCCCTCAGAATCTACTGGCTGAATGAGTGCGTGG
AGGAAATGTGCTCAGAGCTGCTGTGTGTCATCCTGTGTTTGAAGTGCTCCTGCAGCTATCATTCATCCAGTTAAGAATTTGAAGAAGTGTGTGCACAAAG
GATGTACCAGACTATTAATATTGGTGACCATGGGCTAGGGAGTATGTTCTTGATAAATTTACAAAATCTTCTGATCAACTATAGACTTTAAAAATATAAC
ATCAATTTTTTAATAAAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATGTATATATATTTGCTT
TTTTTTTTTTTTTTTTTTAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTACCTCCTGGATTCAA
GCGGTTTTCCTGCCTCAGCCTCCAGAGTAACAGGGATTACAGGCATACTCCACCTTGCCCTGCTGATTTTGTATTTTTAGTAGAGACAAGAGTTTCACCA
TGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCGCCTGGCCAA
ATGCTCTACTTTTTAATCAATGTTTTCCAAAATAGGGATTTTTGCTATGTGCTTTAGAAATTAGAGAACAAACGGTGATAATATATGCTAAACTTAAAAT
TAGTATGCCTCCTTTTATAGACAACAAGAACTTTGTCACTTCCCAGTTTGTCTTGTCATTCAGGAGGCTCAGAGCTACGATCTGTGCCCACTCGTGCTGC
CTCTTCTTAACTTTGATTTCCTGAAGCAGCGATTTCATCTCCGTTTCCCCTCATCACCTGTTCTTTTAACTGTTTAAAAACAGCATTACATGTTGTTGCA
AGTGGCCTCAAATTCTTTTTGGTAGAAGGGAAATTGTAATCCATGAGAAGAAAAAAATTTTCCTAACTATTCTCAGGTGTGTTTAAGGGCTGCATTCCAT
GATGCTATCAGTGCCTTCTTTCAGCTCACAGGATATCGGCCATGTTAATGAGTCTGATGTTGCTAGTATCACAGGCACCGGAAAATATGCACATTATGCT
GGAGCATTAGAATGCAACAGAAAGAGCCCTGGGCTTGGAGTATGCAGAACTGGTTCTTGTTACAACTCCTCTTACTAGTGGGCTCTGGAAGAAAACACAT
TGAATTCATGATCATGGTTAACCTTTGGAGAGAGAGAGGAGACCAGGATGAAGGAGCCAGTCGAAGATCCTGTTCAAGTGTACACTGAGCCAGCAGGTTC
ACCAGAAAGCTATTGAGCGTTTGCTGGAACACATTATGCAGGGTGAATTTCTTCTGGAATGTTGCCAAGGATTTTTTATGCTTCTGTGGCAGGCATTTCT
TGAACATTGTCATTTAGCCAAGCAAAGAAGATTTTCTTAAAGGATAGAAAATGTTTAAAAATTTTTGTTTGTTTGAAGATAGGTTAAATGGCTATATGAT
CTCAGGATAAGACAGAGAAAATCACTTATTTCTCTAAGTGATCTGATTAGGTTAGTGATGTTTTGCCTTTAAACAGATTCATCATTATTCCTAAAGTATT
GCTGTATTAATACTGTCTTCTAGAAAGTATCCACCAGTGCCTACTTTTCTTCGATATCATTAGCTGTTTTTCGAAACTGAATTTGCTCTTCAGAGATTTC
TCATATGTTTGCGTATAAGGAACTACTGGTAATAGCCAAGAAAATTTGGAGGTGCAGAGAACATGCTGAAACAGAATTTTTCACTTTCAATTCTAGAACT
ATGCCATAAAAAAAAAGGAAAATGTAAAAATGTCTTTATATTAGAGCAGATATTTTAAAAGTATTGCAAATTCAATGATAAATTCTAAGGTTAAAATTGG
ACACATAAAAAATACAATATATAAATATCTCCCCAGAAATTATTATCTAATGAATAGTAAAAGCTGACTACAAACCATGTCATTTTAACAAGGGTTTAAA
TAGTACCAAGATTCTCATCATATGCTCTGGGATACCCAGTGATGTACAAGGGTTCTCTCTAAACATGGGGAGGAAAAATTTCAAATATAAAGATTTGAAT
CTTGTCTTTGCCATTCACTAGCTGTGTGATCTTGGGTAAGTTACCTGGTTTCTCTGAGCTTCAGTGTCATCTGTAAAACAGGAATAATAATACCTAGCTC
AGAGGCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACTAGGTCAGGAGTTTGAGACCAGCCTGGCCAAGAT
GGTGAAATCCTGTCTCTACTTAAAAAAAAAAAAAAATAGCCAGGCATGGTGGCAGGCACCTGTGATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCG
CTTGAACCCGGGAGGCGGAGGTTGCAGTCAGCTGAGATCTCGCCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTCCGCCTCAAATAAATAGGTAAAT
AAATAAATAAATAAATAAAAGTAAATAAATAAATAAATAAATAATAATACCTAGCTTATGGGGCTGCTGTGGGTGTTTGTAAAGTATCTCAATGGTGCCT
ACATATTGTAAAGGCTTATGAATATATTAGTTCCTTTCTCAACTTCCTCAATTCATTCCACCACTACAAGTCAATCTAGAGATTAAAATAGGCAAAACTG
TGATCTACGTTAGGATGGGGTTGTTTGAGTGGTGGTTTATTTCTGACTGCTTCATTTTATACTTGTATTTTAAATATACAAGTTTTTGTAAACATTCCTA
AAACAAAACAGATCTGTTTTTATTTTGAAGAAGATCGGACAGATTCTGATATAATGTTTGGAGAACTAAATTATACACAGAATTTTGTCTCTGAAGAGTT
AACTCTATCATGAAAATGCACTCAGTGAAAAGCAAACATCATGCCACCTTTCCATACACGGTATTATGTGTATTTGAATGAACGCATATGGAAAAACATG
GCAATTCTTCTTTTATGCCTAAATCCTATGGAATTTGCCGGCTCCTGTATTTAAGTCTGGGCTGTGATGGTAAACTTGGTTCCTGTCAACTGAGTGTTGT
TATGTCTTTGGCACATTCCCACAGCCGAACCTCCCGTCTGTAACCTGCACCTGCAGTTCACAGGATTCAGCTCGGAGAGCTCTGTACTTCCGGGCCACTC
AGGTACTTGTTAGTGCAGACTGTAAGTTTCTACCCCACAGTTTCTCCACCAGTTTAGATACTGCAAACATTTGGGTTTTGCAGTTTCTGCAATTTTTGTT
TGGGTTCTTTAAAAACAGCTCTTCCCCCACCCCTGGCACACCACCATCTCTCCAAGGCACTCATTGTGAGATGGGAAGCCTGGCGCCTGTCGTTTGTATT
CCAGATCGAAACTAGCAGAATTGAGATTTTCCTCCCTTTTTAGTGCCATGACAAACAAAAGAGGATATGACATGTATTTATTGTTTGGTAAAATGCAGAA
GTATCAATTCCAGGAGACGCTGCAATTCCTTCATCTTTGCCTTGAGTTGTTTATGTGAACTATGGCCCTGTTTGTAGGAGACAGAGAGAAAGTATGAATT
TGGTGGGAATGACGGG

Expression



Full and truncated open reading frames discovered in TCONS_00237103

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.