Detailed information on TCONS_00193500

lncRNA-RNA interactions

Number of interactions: 79

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00193500 610 302 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00193500 561 289 UTR3 Trans
ENST00000268097 hexosaminidase A (alpha polypeptide) protein coding TCONS_00193500 611 434 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding TCONS_00193500 553 299 UTR3 Trans
ENST00000295822 eukaryotic translation initiation factor 5A2 protein coding TCONS_00193500 601 295 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding TCONS_00193500 558 303 UTR3 Trans
ENST00000394622 STEAP family member 2, metalloreductase protein coding TCONS_00193500 544 311 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00193500 503 315 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding TCONS_00193500 639 295 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding TCONS_00193500 528 315 CDS Trans
ENST00000450928 antisense antisense TCONS_00193500 621 302 noncoding Trans
ENST00000463954 SET domain containing 6 retained intron TCONS_00193500 642 285 noncoding Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript TCONS_00193500 510 302 noncoding Trans
ENST00000475187 THO complex 5 retained intron TCONS_00193500 513 299 noncoding Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding TCONS_00193500 554 307 CDS_UTR Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding TCONS_00193500 505 289 CDS_UTR Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense TCONS_00193500 582 304 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00193500 507 286 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay TCONS_00193500 605 312 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00193500 567 301 UTR3 Trans
TCONS_00007944 kin of IRRE like (Drosophila) novel protein coding TCONS_00193500 583 309 UTR3 Trans
TCONS_00025758 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00193500 615 311 UTR5 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00193500 615 311 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00193500 615 311 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00193500 635 285 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00193500 602 292 UTR3 Trans
TCONS_00032161 transcription elongation regulator 1-like novel protein coding TCONS_00193500 513 315 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding TCONS_00193500 618 299 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding TCONS_00193500 618 299 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding TCONS_00193500 621 306 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00193500 621 306 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00193500 621 306 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00193500 632 306 UTR3 Trans
TCONS_00075009 actinin, alpha 1 novel protein coding TCONS_00193500 588 291 UTR3 Trans
TCONS_00078200 GTP cyclohydrolase I feedback regulator novel protein coding TCONS_00193500 590 308 UTR3 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding TCONS_00193500 658 314 UTR5 Trans
TCONS_00104871 hepatic leukemia factor novel protein coding TCONS_00193500 554 305 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00193500 666 297 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00193500 563 305 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00193500 510 289 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00193500 610 312 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00193500 504 311 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00193500 610 302 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00193500 561 289 UTR3 Trans
TCONS_00159938 zinc fingers and homeoboxes 3 novel protein coding TCONS_00193500 605 308 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00193500 617 304 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00193500 620 317 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding TCONS_00193500 597 299 UTR3 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding TCONS_00193500 614 289 UTR5 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding TCONS_00193500 605 315 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00193500 517 272 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00193500 517 272 UTR3 Trans
TCONS_00168418 dual specificity phosphatase 18 novel protein coding TCONS_00193500 645 434 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00193500 612 298 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00193500 604 311 UTR5 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding TCONS_00193500 606 303 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding TCONS_00193500 618 289 UTR5 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding TCONS_00193500 610 292 UTR3 Trans
TCONS_00205177 peptidylprolyl isomerase C (cyclophilin C) novel protein coding TCONS_00193500 635 319 UTR3 Trans
TCONS_00215909 O-acyl-ADP-ribose deacylase 1 novel protein coding TCONS_00193500 599 303 UTR3 Trans
TCONS_00216914 high mobility group nucleosomal binding domain 3 novel protein coding TCONS_00193500 510 325 UTR3 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding TCONS_00193500 528 315 UTR3 Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding TCONS_00193500 658 301 noncoding Trans
TCONS_00222612 carnitine O-octanoyltransferase novel protein coding TCONS_00193500 534 310 UTR3 Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding TCONS_00193500 534 310 UTR3 Trans
TCONS_00222623 carnitine O-octanoyltransferase novel protein coding TCONS_00193500 534 310 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding TCONS_00193500 601 319 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding TCONS_00193500 601 319 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00193500 644 316 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00193500 581 313 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00193500 644 316 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00193500 581 313 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00193500 644 316 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00193500 581 313 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding TCONS_00193500 600 311 UTR5 Trans
TCONS_00248986 transmembrane protein 246 novel protein coding TCONS_00193500 540 307 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00193500 614 301 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00193500 567 311 UTR3 Trans
TCONS_00253258 sushi-repeat containing protein, X-linked 2 novel protein coding TCONS_00193500 596 317 UTR3 Trans

Sequence

>TCONS_00253258 (5580 nt)
CCGGGATTGGTGGGAGGATCGTGGGGGAGCGGCAGCTCAGGACGGAATACGGCAATGACCGCCCCGGTCGCGAGGGTGACCCTGCCCCGGGCTGCTGTGG
GGGCGCAAGAACCCTTTCACTTTACGGCGAGATTAAGCTCAGGGTCAAGTTCTGAGCAAAAAGTGTCAAGGAGCCTTTTTGCAACCTCCTATAATATTGA
AACAGATTCTGTGCCCTTTAAAGGAGATAATAACTAACATCTGGGGAGCGCTTTACAATTTAGAAAAGGCCTTTCACACACAGGCCTGTTTCATCTTCAC
AACAATCTTATAAAACAGATATATTGTTCCCATTTCCCAAATAATGAAACGGAAGCGCCGAAAATATCTCCTATAGGGCTCTTCAAACTGTGGTCAACTT
AGTAAATGATGTTGACAGTGGAAGTGTGATCATTTTATTTTCCTGCCTTTGGAATTGAAGATTGTAATTTTGCAAAAATTTTGTTGAAGATGATGTAGCT
TTGGTTCAGAGAGTTCCAAGTCTCTTCTTCGGCCTCTCAAACATGGTACCATCCCTAATGAAGTCAACGGGTCCAGCATGACAGGATGGAAGTACAAGTG
TCAGCACCTATGTGAGTCCCAAGAGGGGAAATTAGAAACAAAAAGGAAGAAGAGGACATAGGCCAGGCACGGCGGCTCACGCCTGTAATCCCAACACTTT
GGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGTCAACATGGCAAAAGCCCATCTCTACTAAAAAATACAAAAAATTAGC
CAGGCGTGGTGGTGGGAGCCTGTAATCCCACCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTCAATCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCG
TGCCATTGCACTCCAGCCTGGGCGACAGAGTAAGACTCTGTCTCAGAAAAAAAAAAAAAAAAAGGAAAAAAAAAGATGATATAGTCAAAGAAATAACATT
AAATTTCTTATAATTTAAGATGAATGATTTCAGATTGAAAAGTTTATAAAGGTGCCAAAGAGAAAAGGAAAGATCCACACTAGATACATTAGAATGAAAT
GTCAAAGTAACATACATAAAGAAGAAATTCTGAAATCTTCTAGAAAGAAAGAACATGTTATCTATGAAGGAACAAGGATCATATTGATATTAGATTTCTC
AACAGCACATGTGCTGCAAGAAGACAAAGGAGTAATATTAAGTATTGTGAAACAAACCTAGAGCTTAGAATTTCATATTTAAAATTCTAAATAAATTATC
ATTCAAATTGTTATAGTTTGGGGGCCAGGTGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGACTAAGGCGGGCAGATCACTTGAGCTCAGGAGT
TTGAGACGAGCCTGGCAAACACGGCAAAACCCCATCTCAAAATACAAAAATTAGCTAGATGTGGTGGTGCATGCCCATAATCCTAGCTACTTGGGAGGCT
GAGGCACGAGAATTGCTTGAACTTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTCGGTCTCA
TATATATATGAGACTGACAAATTGATACAGTTTGGATATATGTCCCTGCCCCAGTCTCATGTTGAACTGTAATCTGCAATGTTGGAGGTGGGGCCTGGTG
GGAGGTGGTTGGATCATGGGGGCAGATTTCCATGAATGGTTTAACACCATCTTCCTGGTTTGTCCTCATGACAGTGAGTGAGTTCTTGAGAGAACTCATC
ATTTAAAAATGTGTGGCACTTCCTCTCTTTCTCTCTTGCTCCTGCTCTGGGTATGTGACGTGCCTGCTCCCCCTTTGCCTACTGCCATAATTCAGAGTTT
CCTGAGGCCTCCCAAGAAGATAAGCCGATGCCAGCACCATGCTTCCTGTAAGCTGGCAGAACCATGAGTAAATTAAACCTCTTTTTTAAATAAGTTACCC
AATCTCAGGTATTTTTTATAGCAATGTGAGAATGTGCTAGCACACAAATATGTTACCACTTAAATTATCATTCAAATATAAAAGCATAGTAAAGCTGACA
TTAAGCCTCAAGCATACAAGTTCACAGAAAATTTGTCACACAAGGACCCACATTATAAGAGAAGCAGAAATTCATACTGCTTTAAGAGATATCAGAGGCT
GGGTGTGGTGGCCCATGCCTATAATGCCAGCACTTTGGGAAGCCAAGGCAGGAGGATCGTTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATAGTG
AGCCCTTGTCTCTATAAAAAATAAAAAAATTAGCCATGGCCCTGGTGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGAGAGGCCGAGGGGGGTGGATC
ACTTGAGGATAGGAGTTCAAAATCAGCCTGGCCAACATGGTGAAACCCCATCTGTACTAAAAATACAAAAAATTAGCCAGGTGTGCCGATGCACGTCTGT
AATCCCAGCTACTTGTGAGGCTGAGGGAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCACACCACTGCACTCCAATCTGTGT
GACAGAGTGAGACTCTGTTTCAAAAAAAGAAACAACCACATGTGGTGGCATGCGCCTATGGTCACAGATACTTGGGAGGCTTAGGTTGGAGGATGGCTTG
GACCTGGGAAGTTGAGGCTGCAGCAAGCTATGATTGTGCCACTGCACTCCAACCTAGGCAACAGAGTGAGACCCTGTCTCAAAAGAAAAAAGAGAGAGGG
AGCAATATCAGAAGGTATCAAACATGTAAGTAAAATCCAAATAAAAGAACCAAAGAAAAGAGAAATAGAAACTATTTCAATTACAACTCAGAACTAAATT
CCTAGAAAATATTAATATGACATGAAAGCATGCTAATATATTTATTTTGCACGAGTAATAATATGGATTTGACAACTTTAAAATAGGGAGAAAATAAATA
AGCTTATGGTGTTATCAATCAGGAGACAGAAATTATACCAATAATTTATCAGGAATTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTTGTTGCC
CAGGCTGGAGTGCAATGGTGCGATCTCAGATCACTACAACCTCTGCAGCTCTGGTTCAAAGTCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTAC
AGGTGCCTGCCACCACCACATGTGGCTAATATTTTGTATTTTTAGTAGAGACAGGGTTTCACCACATTGGCCAGGCTGGTCTCAAACTCCCGACCTCAGG
TGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGCTTACAGGCATGAGCCACTGCACCCAGCAGGAAAAATTTAATATAAAGGTTACTAACTAATAAAAC
ATGGTTAACTATTAAGACAGATAAAGGATAACTCTAAAGAATACCAGAACCTGGGCACAAGGGCTCATGCCTGTAATTCCAGCACTTTAGGAGGCCAAGG
TAGGAGGATCACTTGAGCCCAGGTGTTCAAGAACAGCTTAGGCAACATAGTGAGACCCCATCTCTACAAAAAATTAAAAAACAGCCAGGCATAGTGGTAC
ATACCTGTAGTCTCAGCTCCTCAGGAGGCTGAGGTTAGAGGATAGTTTGAACCTAGGAGGTTGAGGCTGCAGTGAATCATGATTGTATCACTGCACTCCA
GCTTGGGTAACAGAGTGAGACCGTTTCTAAAAATTAAAAAAAAAAAAAAAAGGCAGCTGGATGCAGTGGCTAGCACCTGTAATCCCAGCTACTTGGGAGG
CTGAGGCAGGAGGATCACTTGAGGTCAGGAGTTGGAGACCATCCTGGGCAACTTAGCAAGATCCCTATCTCTTAAAAAAAAAAAAAAAAGGAAGAAGAAG
AAAAAGCAAATGTAAACAGCATGACTACCTCTAAGGCTGAGGGAGAACATCCAAGGGAGTAACAGACTTGGAAGAGATCTCAACCCTGAGGCTAAAATTC
AGACCCCCTTGGAGAGGACGGGGCTGTAGCTAGATGGCAGAGAAATTATATGTGTAAATGACAGAGGAATTCACTGGAGTGCTGCAGATAGAGGTGGTGG
TGCAGCTGCAGGTGGGGATGGTGAGCTGGAAGCCATCTACTGGGGTGAGGTGGAAGCTTATTGGAGAGTGAGTGCCAATGGAACTCCATAGGTGACACCA
TAAGAACAAAATCTACAACAAGGAGATCTAGGAAGGGCAGCTACTGCCTCTCTGCTATGCCTGCAGTGTCTCTCTAGTGCCCTCTGCTGATAAGCCTAAC
ATTGCACCAGCTGGCAAATGAGAAATGTTCATGGGATCCAGATCCAGATCAGTTAACTCCAAACAAGAAAAAGAAAGATTGCTTTGGACTAAGGAGCAAT
AAATTGATAACTGGCACAGTGTTACCCTCCCTTTTTTGTTTTTGTTTTTCCATTCACGGCTATACTGTCAATATCCATTCATGCTCTATATGTATGATTA
TTGGACATTCTATTTTTATACACTCCCTGGTTTTCTTTTCCTTTCATTGTTTTGGGGCTATTTTATAGCTCTGAAAGTTGTAGAAAACTAATAACAATGT
AAAAGATTTTTAGTTCATAGAAATGAAAATTATTTGTGTCTGGTGGAATATAGTAGATTAACCACCCTGTGGTTAGACCATTTTCCATCTTTTAAATAAA
TGCATTCTAGCATTCCTTGTTGCCTATTTATGTGTGTTTTTTTGAATTATCCTTTGATCTAGTTGTAACATCTTACTGGTTCCCTCATTAATTAATGAGG
TAAATAAAACCTATCACACATATTCATTTTGTATTTGTATGTGAGTTATAATTCACCTTCTAAAAAATTATACTTGAAATAAGACAATCACAAAATGGCA
AATATTGTATGATTCCACTTGTATGAGGTGCCTGGCATAGTCAGATTCATACAGACAGAAAGTAGAACAGTGGTTGTCAGGGCCTGGAGGGCAGGAAGGA
AAGAATGCGGAGTTATTGCTTAATGGGTACAGGATTTCAGTTTGGGAGGATGAAAATGTTCTAGAGATGGGTGGTGGTGATGGTTGCACAACAATATGAA
TGTACTTCATGCCAATGAACTGTACACTTAAAAATGATTAAAATGATAAATTTTACATTATGCATATTTTACTATAATTTTAAAAATTAAAATTAAAAAA
TTTTAATACTGAGTTTATTAATTGCTTTTCAAATTCAGTCACAGTTTACTAAATATTCTGTTAGCTAAAGTCTAAATTGTAAAGTTAACCTCCAACAACT
TGTATATTAAATCATGGGGGAAAAAAGAAAATGGCTAACATTTAAAAATAAACATACATATTACAAGCAAAGAGAAAATATGTAGCCAACCTACTACAGC
CCTGTTTTTTAACTGATGACGAGACCATGGTTGATATTTATGACCTTCTGCTACCTACTCTGTATTCCCTTTGCCCTCAGCCAGAAGCTCAGCTGGTCAG
GTGTCTTAGTGGAGTGACCAAGCTTTCATTTCTAAATTGTCTGAGTCTTAATATTCCAGCCTCTATTTTTTTGTGTGTGTG

Expression



Full and truncated open reading frames discovered in TCONS_00253258

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.