Detailed information on TCONS_00197177

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00197177 548 283 UTR3 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding TCONS_00197177 509 285 UTR5 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00197177 519 293 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00197177 504 283 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00197177 643 286 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding TCONS_00197177 606 277 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00197177 548 283 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00197177 540 272 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00197177 540 272 UTR3 Trans

Sequence

>TCONS_00168220 (5425 nt)
GTGAAAGCAGTCAGCCTGTCCTTCCTGGTTTTCCGTTAAACTAAGCCGGTTTCAAGTTTCAGCTCCTCCTTGAATTCCAGGCTGCTGAGACTTCCCTCTA
GAATCCTCCAACATGGAGCCTCTTGCAGCTTACCCGCTAAAATGTTCCGGGCCCAGAGCAAAGCTTTTATGCCTTTGAAGTGAAGGATGCAAAAGGAAGA
ACTGTTTCTCTGGAAAAGTATAAAGGCAAAGTTTCACTAGTTGTAAACGTGGCCAGTGACTGCCAACTCACAGACAGAAATTACTTAGGGCTGAAGGAAC
TGCACAAAGAGTTTGGACCATCCCACTTCAGCGTGTTGGCTTTTCCCTGCAATCAGTTTGGAGAATCGGAGCCCCGCCCAAGCAAGGAAGTAGAATCTTT
TGCAAGAAAAAACTACGGAGTAACTTTCCCCATCTTCCACAAGATTAAGATTCTAGGATCTGAAGGAGAACCTGCATTTAGATTTCTTGTTGATTCTTCA
AAGAAGGAACCAAGGTGGAATTTTTGGAAGTATCTTGTCAACCCTGAGGGTCAAGTTGTGAAGTTCTGGAAGCCAGAGGAGCCCATTGAAGTCATCAGGC
CTGACATAGCAGCTCTGGTTAGACAAGTGATCATAAAAAAGAAAGAGGATCTATGAGAATGCCATTGCGTTTCTAATAGAACAGAGAAATGTCTCCATGA
GGGTTTGGTCTCATTTTAAACATTTTTTTTTTGGAGACAGTGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTAGTGCGTTCTCAGCTCATTGCAACCTC
TGCCTTTTTAAACATGCTATTAAATGTGGCAATGAAGGATTTTTTTTTAATGTTATCTTGCTATTAAGTGGTAATGAATGTTCCCAGGATGAGGATGTTA
CCCAAAGCAAAAATCAAGAGTAGCCAAAGAATCAACATGAAATATATTAACTACTTCCTCTGACCATACTAAAGAATTCAGAATACACAGTGACCAATGT
GCCTCAATATCTTATTGTTCAACTTGACATTTTCTAGGACTGTACTTGATGAAAATGCCAACACACTAGACCACTCTTTGGATTCAAGAGCACTGTGTAT
GACTGAAATTTCTGGAATAACTGTAAATGGTTATGTTAATGGAATAAAACACAAATGTTGAAAAATGTAAAATATATATACATAGATTCAAATCCTTATA
TATGTATGCTTGTTTTGTGTACAGGATTTTGTTTTTTCTTTTTAAGTACAGGTTCCTAGTGTTTTACTATAACTGTCACTATGTATGTAACTGACATATA
TAAATAGTCATTTATAAATGACCGTATTATAACATTTGAAAAAGTCTTCATCATTTTCAGTATTTCTCTCTGCATTATTTTTTAGAAGCAACTCAAATTC
TGTAATCATAATATTACCAAGTAAGTCAGTCTTTATTTTTGCGTGAAAATCCCAAGTGTAGAAAAAAGGACATGAGTATAAGATCATTTAACTTGATTCC
TTATAGGCTGATTTGGGTTGCTAATGTATTCGTACTAGATTAGCCACTTGGGAGGAATTCAATGCTGCATCATTCTGATAGCTGAAATAGTAAAAGTCAA
CTCCAAACAGCCTAAATTCTAGTATAAAAAGGGGGTGATCATACAAGTCCTAAAGTGTAGATCAGCAGTCACTGAACCTCTTAGAGTCACAAGGCATTTC
TTCTCCCAAAGTCATGACCTTTATATTTTGTTAGCCTTATAATTGACTAACAAAGCAACCTGCCAAGTTGGTGAAGGTTAATTATTGCCTCATGAAATAT
ACATTCATCGCATAAAAGAATTAAATAGGAAGATGGCCAAAAATGTAAAAAAGTCGTATAAATTTGTCTAAGAAGAAAAAGACCCAATTTAAGTAGTCTG
TGACTTGACTCCCAAATTCTGACCTGATGGATGAAAGTGAAGATGTTTCGTATGGCAAATTCAGTAATGCTACCTCAGTATATAGTTCTGTATACGTATT
TGGACCAAAGTTATTAGATAAACCAAAAATATTTCATGAAGCATCTTCTGCTTCAGAGTCCATATCCAGCCACCCAGCTATGAATGTATTTAGAAAGATA
TTTGGTGGAGGTGGAATTTCTACCAGAGGTCAAGAGGATTTGTAGGGATAGCCTCAAGAATGCCAGATGAGTGTGTCAGAAAGCCTGCTCCTACCTCTCG
CCAGCTGCGTGACTTTAGGCAAGTCACTTAAGTACCTTATTTCAGTTTCCTCACCTGTAAATTGAACAGGGGTTGAATGGAATAAAAAGCCCTTTGCAAC
TCTAAAAGTCAATTAACACACTTACTAAGGTGTTTTAAGTGACCAGGAAGGAAATCAGAACTAACCTGGATTGTTAGCGAAGAAAACAGAAGCCACCAAC
AAGCCTATCTGTCCTTTGCAATTTTGCTCCAAGAGCCTATTAGCAATTTGAATTCTGAGCCTCTAAGAAAACTTATGCTCAGGTGGCCCCTCCAAGTGTT
GGTGCCAGAGCACTCTTGCCTTGTATCCTCACCTACGCCTTCCATGAACTCATAGCAGTGCTGTGGCACTGCAGGGGTGTTTTATGCATTCACGTTAGGA
GCATGAGCAGAACTGCATATGCCAGCACCACATGGGCAGCAGAGACTCCCCACTGCCAGATGGATGATAATGGAGCTGCACTGGGAACAACCAGGACTGT
CCCAGTCAACATGATACAGATGAACATCCTGCCTTAAGTCACTAGCTCTCTCCAAAGCCAGATAAAGTGGGTTTCTTCACTTACATCTCTCTAATCTTGG
CTGCCTTATTCAACCTACAGACTCTATGTCAGTGCTGGATTTTCTCCCCTTGCCCTTTAGGTAAGCAGAGTAGGCAGGAGGAGATTTGAAAGCGTGTCAT
ACATATTGCCTTGAAAGAAAGGACATTCAGGTGTCCCTTCGGGGTTCTGTAACAATTAGGCTATGTGTGCTGAGAGAGGGAGCGGAGTCATTTGCTGATG
TGCTGCTACCTGTAACTCAAATGCCTCATAGGAATACCAGCGGACAAACACATAGAGGAAAAGTTGAATCTTTCCTATATTGGACAATCTTCCTTCAGTC
TTGTTTCTGCATCAAAAAGTCTGGGACACAGAGTGCTACAGGATGCCTGGGCTAAGGACTGTAACAGAAAAATATCAACATCAGAGCCTGGCACAGTGGC
TCACACCGGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTCAGGTCAGGAGTTCGAGACCATCCTGGCCAACATGGTGAAACCCCCATCT
CTACTAAAAATACAAAAATTAGCCGGGCACGGTGGCACATGCCTGTAATCCCAGCTACCTGGGAGGCTGAGTCAGAAGAATCACTTGAAAACAGGAGGCT
GAGGTTGCAATGAGCCAAGATTGCACCACTGCACTCCAACCTGGGCAACAGAGCGAGACCCCATCTTAAAGACCCTGTCTCAAAAAAGAGAGAAAAAGAA
AAAGAAAAATATCAGGCATCACATGAAAGAGTATTCAGCTGTCGTTCTTGTGAAAAAGGAAAAGGACAAAATCAAATGCATTTTAACTGTGGTAACTAAT
TCACTGACTTGAAGTTTGCTTTGTTTGTTTTCTTTGGTGCGTAGAGAAGAATACTTCATACTAACTCCTGATCATCTTACAGCAGACATAACAACAGAGT
GTTAGAGACTGGAATAAATATGAATTTGGCTGAAATGTGCCCTGAAAGTTGTATTTCATTTTTTTAAATGTTTAACAATTACACTGTATCAATAGTATAT
ATACGTGTACATATATATAATTCTTAATAACTGCAGTGTATCTAGCATATATATAATGGTGGCTGGTACATGTTTAATAGCAGACTCTGGAGGAGGAATC
CTGACATACAGCATTTGCCAGCTCAATGTAAATGCTCATGCTCCCTCATGGTCAATTTCAATCTACCACTGGTTTAGTAACTAGGATGCAAAATTTCTAA
AAATGTGATAATTGGTGATGGGCATGATGGCTCAGGCCTGTAATATCAGCACTTTAAGCAGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTAGAGAC
CAGCCTGGGGCAACATGGCAAAACCCTGTCTCCACAAAAAAAATCAAAAAATTAGCTGGGTGTAGTGGCACATGCCTCAGGTCCCAGCTACATAGGAGGC
TGAGGTGGAAGGATTGCTTGAGCCCAAAGAGGTCAAGGCTGCAGTGAGCCGACATGGCTCCACTGAACTCCAGGCTGGGCAACAGAGCGAGACCCCATCT
CTACAAAAAAAATTTTTAAATTAGCCAGGTGCGGTAGCACACACCTGTGGTTCCAGCTACTCAGGAGGCTGAGGTGAGAGGATTGCTTAAGCCCAGGAGG
TAGAGGCTGTAGTGAGCCATGATTGCACCACATTGATTTGTGGTGTTCCTTTGAAAGAAAAATGACATGTTTGGGTGGAGCTGATATGAGGACACTCTAT
CCATATTTAGTCCTCTGCTTGATTTTATCTTTCCCATCAAATAAAATTCTAATAATTGTTAGGCCTAGAAACTAATCCACCACACTCCTTCCCACTCTTC
CCTTCCCCTCATCCAGCTGAACTGTTAAGGCTGTCTCTTGCAGAGCAGTGCAGGGGAATAAAAAGCAGCAGAGAGAGAGAAATTAGGAAGCTATCACTAT
AATAGTGACAGGTTCAGAGGGCAGCGATGGGAAGTAGTGACATTCCCAGCACCAGTGAACAGCCAAGAGACTGCCCCAAGAGAAAACACCTGGGAGAAAA
TACTTTGCCATCAGCAGAACCTCCCTCCTCTTTTTACCATCCCTTTTCCCTCTGCTTGACCCTTGACATCCCAGTGTGTATCCCTTTCTTTCCCTCTCCC
ACCTATGGAAACATTTTCTCTTTTAATTTGTATCTTCACTTTCCTCCTAACCCATTCATCTCTTTAACATATTTTTTATTTCTTTAACATATTTTTATTT
CATTCCATTCCTTCCCTCTTTTCTCATCATCTCGATAATATGAGACTAAACCACAACTTTAAATGTCTTCTGTTTATTGAATATAAAGTTGGTTTCCCTA
CAGAATCAAAAGTTCTAAAAAAGAAAACTTAAAAAAATTTAAGTTGGCATTTTCAGAAACAGAAAATCAATTACGGCATGTTCCTCACTTCTAAGTGGGA
GCTAAACAATGGGTACACATGGACATGAAGATGGAAACAGTAGACACTGGGGACTCCAGAAGGGGTAGAAGGAAGGAATACAAGGACTGAAAAACTATCT
ATTGGGTACAATGTTCACTATTTGGGTGATAGGTTCACTAGAAGCCCAAACCCCAGCATCGCCTATTATATTTATGTAACAAACCTGCACATGTACCCCC
TGGATCTAAAATAAAATAAAGTTGGC

Expression



Full and truncated open reading frames discovered in TCONS_00168220

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.