Detailed information on TCONS_00199845

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00199845 5677 2708 UTR3 Trans
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding TCONS_00199845 621 277 UTR3 Trans
TCONS_00150045 ankyrin repeat domain 36C novel protein coding TCONS_00199845 1230 913 UTR3 Trans
TCONS_00150045 ankyrin repeat domain 36C novel protein coding TCONS_00199845 886 1315 UTR3 Trans
TCONS_00150051 ankyrin repeat domain 36C novel protein coding TCONS_00199845 1230 913 UTR3 Trans
TCONS_00150051 ankyrin repeat domain 36C novel protein coding TCONS_00199845 886 1315 UTR3 Trans

Sequence

>TCONS_00199845 (2698 nt)
GGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCAACATTTATTAAATAGGGAATCCTTTCCCCATTGCCTGTTTTTCTCAGG<br />GTTGTCAAAGATCAGATAGTTGTAGATATGCGGCGTTATTTCTGAGAGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATTCT<br />GTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTC<br />TTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACGTT<br />GGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGT<br />TTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAAGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGA<br />TTTGGCTCTCCTGTTATTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGGTTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGA<br />TTTTGGGCTGAGACAATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTT<br />CCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGTGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAA<br />TGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTG<br />ACAGTTTTTAGCATGAAGCGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCT<br />GGATTACATTTATTGATTTGCATATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGAT<br />TCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCCCTTTTTTGGTTGTGTCTCTGCCTGGCTTTGGT<br />ATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGT<br />ACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCT<br />ATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTTGAGGAATTTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGG<br />TGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTT<br />TTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTC<br />TATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTT<br />AGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGCGTCCCAGAGATTCTGGT<br />ATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTTGTTATGTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTT<br />CCATGTAGTTGAGCAGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTATAATTTCTGTTCTTTTA<br />CATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATATTCTGTTGATTTGGGGTGGA<br />GAGTTCTGTAGATGTCTATTAGGTCCGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTCATGGATCTGTCTAATGTTGA<br />CAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTTTATGAATCTGGCTGCTCCTGTATTG<br />GGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGGTTTAA<br />AGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTTGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGCCTATGT

Expression



Full and truncated open reading frames discovered in TCONS_00199845

In silico ORF/peptide predictions
>peptide 1 (65 aa)
MSIRSAWCRAEFNSWVSLLTFCLMDLSNVDSGVLKSPIINVWESKSLCRSLRTCFMNLAAPVLGA

>peptide 2 (53 aa)
MVDKLFDVLLDSVCQYFIEDFCINVHQGYWSKIPFFGCVSAWLWYQNDAGLIK


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT005531 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 0)