Detailed information on TCONS_00202233

lncRNA-RNA interactions

Number of interactions: 29

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000182527 translocation associated membrane protein 2 protein coding TCONS_00202233 542 294 UTR3 Trans
ENST00000334197 zinc finger protein 347 protein coding TCONS_00202233 603 298 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding TCONS_00202233 575 282 UTR3 Trans
ENST00000553936 gephyrin nonsense mediated decay TCONS_00202233 501 293 CDS_UTR Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding TCONS_00202233 518 295 UTR3 Trans
TCONS_00008385 nitric oxide synthase 1 (neuronal) adaptor protein novel protein coding TCONS_00202233 606 295 UTR3 Trans
TCONS_00039117 nicotinamide N-methyltransferase novel protein coding TCONS_00202233 567 305 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding TCONS_00202233 627 298 UTR5 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding TCONS_00202233 603 296 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding TCONS_00202233 635 298 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding TCONS_00202233 648 296 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding TCONS_00202233 601 298 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding TCONS_00202233 601 298 UTR3 Trans
TCONS_00109814 lincRNA novel protein coding TCONS_00202233 586 287 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00202233 611 298 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00202233 603 298 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding TCONS_00202233 593 288 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding TCONS_00202233 593 288 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding TCONS_00202233 653 285 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding TCONS_00202233 625 297 UTR5 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding TCONS_00202233 612 290 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding TCONS_00202233 612 290 UTR3 Trans
TCONS_00182243 homogentisate 1,2-dioxygenase novel protein coding TCONS_00202233 549 304 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00202233 608 298 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00202233 528 313 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00202233 614 295 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding TCONS_00202233 614 295 noncoding Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00202233 527 311 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00202233 651 299 UTR5 Trans

Sequence

>TCONS_00252827 (8373 nt)
GGGCCCCTTCACACCCCTGCCTGCTGGGCCCCTTCACACCCCGGTGGTGGTGCAGCCCTGCCTCCCGCAAGACAGCACTGCCTTCGTGCTGGACACAGTT
CTAAGGTGGAGCCTGGAGTGCCTGTAGCACAAATCCCGGAATTGGGAAGTGCCCAGCTTTGGGCCACTGTGATCCCTGGGTCTTTCCCACGCGCGTAGTC
TCGTGCCGCCTTCCACCCCGGTCCTGTGTCCTGTGCCCCGGTTCAGAATACTACAATTATTCTCATTATTTCATGGGGTTATTTCAGCTTTTCAGTTTCT
TCAGTGCCTCATTCCATGAATGCTAACTTTTTTCATCCTCATACTTCCTAGGGTTGTCTCTGAATTTTCACTCAGTTGTCTACCAAGATGTTGAATGGAC
CCAGAGCCAAGGACGTGGTCTTTTATCAGTGGCACCTGAGACTTTCTTCCCTGTGGACGCAAATCCATTATTCAGCACTCTGGGCACAGCTACAGATCTG
ATCAGCTATCCATTCTCCAAACTATCTCATCCTCTGTCCCATTTTTCTGTCTCTCTTGTCCACAAGGCATATACCTGAGAGTTTTCAAATTCCTCAGAGA
AATTTAGATATTCTGTGGCTTTGGCATTCACCTAATGTGTTAATCTACAAACCTTTTTTACAGTGTGGATTTTTTTTCATGATGTGAATTCAAGTGGTTT
CTAATGGTCTCTTCATAAAGTTGTAAACCAAAAGTAAAATTCTAAGGCCCCACCCCATCTGAATGGACCCCTTCTCTGGGCCAGGGCACTCCAAATTAAC
CTGAAAACCGTTCAGGCCACGACATGAAGTGGGGGCGGGTGGGACATGGCTGACTATGCCCTCCTCCCTTTTGGAATTCAGGGAAAGCCAACACAGACCT
TAAGTCTAATGAGAAACACCATCTATTCTCTCTGAAGCCTGCTACCCCAAGGCTTCTTCTGCTGATAAAACTTTGGTCTCCACAACCTCTTATAACCCAG
ACATTCCTTTCTATTGGTAATAACTCTCAACTAATTGCCAATCAGAACATTTTTAAATCTACCTATAACCCAGAAGCCCCCACTTTGAGTTGTCCTGCCT
TTCTGGACTGAACCAATGTATATCTTGAATAGATTTGATTGATGTCTCACGACCCTCTAAAATGCATAAAACCAAGTTGCACCCCAGCCACCTCCTGAGG
TCTGTGTCATGGGCGTGGCCACTCTATTTGGCTCAGAATAAATCTCTTCAAGTATTTCACAGAGGTTCAGCCTTTTCATTGACAAAGTATTCATATCACT
TGTTGAAGAATCCTTTCTAGAATCTTCCACAGCTCTTTGAGCTGTAGTTTCTGAAGTCCATCTTTATTCTCCCTCCCATCACTGGCTCCTGTTTTGTTCT
CCAGAACTCTGAAAATACTAACAACTATGATTTTGTGACCCAATTTGGAAGTTCTTACAGGGAAACCTCAGCAAGAAACAGCTCAGTGCTAGACGCAGTG
GCTCATGTCTATAATCCCAGTACTTTGGGAGGCTGAGGTGGGAGGATCACTTGAGGCCAGAACTTCAAGACTAGCTTGGGCTATTTTAAAATTTTTTAAA
AGGGGGAGCATCTCAGTGACTGCAGCAGGCCTCAGCCTCCACTCCCAACAGTTAGTTGGGCTCTACCAACTGTTGGCCGAGTCTCCAACCTGGAGTACCA
CAGCCATCATCACCCATGGCACCCAGGAGTGCTCCGTCATGCTTTCCCTTTAGTTCTAGGGGTAGAAAATGCCTTCATTCAAGAGAGGACACACTTAATG
AATGCAACCAGCTAGAATCCACCCTTTTAATATTTAAATATAATCCACCCTTATAATATTTAAATATGTGGCTTTGTTTAATCCTCCCCATGCCAAGGCA
CCATATCCACATTTTACTGAAGAGAAAACTAGAGTTCAGAGAAGGTAACTTGCCTAAAGCCAAGCAGGCAGTAAGAGGAGATTCAAGCCCAGATCCTTTT
GTGCTTTTTCTGCATCATCTCAGGGGCAGCAAGGCTGACTCTTGAAAGGGAGGTTAATTACTATGAAATTAAGGTTTAAAGAAAAAACACCCTGGCCAGG
CGCGGTGGCTCACAGCTGTAATTCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCAAGACCATCCTGGCTAACATGGTGAAACCTCGTCTCTACTAAAAA
TACAAAAAATTAGCCAGACGTGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCA
GTGAGCCGAGATTGCACCAGGCACTCCAGCCTGGGCAACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAGAAAGAAAAAACACCCTGCGTGCATACTCA
TATGAATGTACAAATGGATGAGTCTAGAACAAGAGATACTAGCCTGTTACATACACAAACTATGCAGCTGCAGTCCCTGCTGCTTCTACAACCCTGACCT
CTAAGAAACCTCTAGCTCTGAATCCTGTCAGTACCTGGGCTGTGCTGCTTGGGACAACATTGTCTTCACAAGTCCTCTCCACATTCTCAGAGGTGGGGGT
ATTGCCAATGATGGGGGTTGCTGCCTGAGTCCCGTCACCAGGGGACAAAGCTACAGCAGAGACCACCATCTGCCAACAAAAAGAGAGATCATCTCCCACC
CCTGGTTCTGCTGACCCAATCACTGGAAGCATCAAGGCACCACTATCTCCTCATCTGCCTCAGATTCAATTTCCTCCTAGCCAGGTCTGTTCTAAGCTCT
CCAGAAGTTGAGAAATTAACTGAAAGATAACACTTTCCTCCCTGCATTAAGGTTCATCACATAATGTATCCAAATACTGGGTCAGTCTTTCCTTTGGTCT
CGTTTCTCTCAGCTAATTTGAAAATGCCTTTTCTGTTTTCATTAGAATTTTTCTAAATGTTTCTGGGCACTTGTGTTCCTGAGGCTTTCCATAGTGCACC
CTCTTATGCATCTGATGTCTTTGGCACATATAGGCCCTCAACAAGTATTTGTTAAATGAACAGATAACCATCCTGTCCTTTGTGTGAACAAGCATATGCA
AGTGTACATTGTATCTGTACATGTATCCAACAGCATCCATCTGAAGCCACTTTGTTCGCTTATTTTCTCAGGATGACTGATGGCTGCATCATGACATTTG
CACACAGAATCTTTTCTTCTCCAGTCACTTTTCCTTTTTCCAGATTCCCGCCATAGAATTCCAGGGACAGAGCCAACCATGCCTGGCACCCCCTCCTGTC
CTGGGACAATGATACTTTCTCCCGTGACTCCCATCTTCCTTCCAACATTCTTCTGCTAGAATTCAGTAAGGAAGACAATGACTTACCACTTTTAATTTTT
TCCCCTTTTTTGCTTTTCTACCAAATACTGCTTTTAACACAGGCTTTTCACTGAGTAGTGGACAATCTATCAGCTAGGTGCTATTCAGTGTGAGGGGCAT
TTGCAAAGGTCTGCATCAGTGCTGGCTGATGGAACTTTCTAGTGATAGCATCATTCTGTAGCTGCACTGTCCAGTGCAGAGGCTACTTGCCACTGTGGCT
ACTGCTCAGGATGGTGCAGGTCTGAATATCTTAGACACAGCGGCCACCGTGTCTACTGCACGGGACTGAATATTTTAGACACAGCGGCCACCGTGTCTAC
TGCACGGGACGGCGAGGGTCTGAATATCTTACAGACAGCGGCCACCGTGTCTACTGCACGGGACGGCGAGGGTCTGAATATCTCAGACACAGCGGCCACG
GTGTCTACTGCACGGGACGGTGCAGGTCTGACTGTCTTAGACACAGCTCACCTTTGATCCGTGTTAGGAATTATCCACATCTCCTCTCTGGGCAATATTC
TACTTTCTTTTTATATTGACCCAATTATTTTACTTCTTTGGTGTGTCCTTTCTCCTCACACACATGGGTTCACTTTAAAACCTTGAAACCCACATTTATA
AAACATTTTCAATATGAAACATCGTTCCATGACTCATATAGTACTCCATGGAGTACTATAAACATTTACATTTCCAGACCACCCACTGCCCAGTGGTTTT
CCTGGTCTCAGTACTCATGAAAATGGTCTGAAGGTTTGTTTTGGGTTCCTAAGCAGTAGACACACACACAACACTGCCTGTCAGTTATTTCTTGGAAACT
AAATCAGCCCTTCTGTTGCCATCCTATCATGCTTCAGGGGTGCCTGTGCTAGTTTTTAATTCTTTGTCCTAACACTTAAATGTTTGCTCAAACGCCCATA
TTAATACTTCCTCTTAGTTTACAAAAGGATTTACTTTCTTACTGGTTGGGATGAAGCTGCCTGAGGTTGCCACCTGTTACTTTTCCTTCATTTATTGGAC
CAAGTCATCCCATTACATGTCAGCTGTGGAGGTTTTCAAACTGTGGTCCCTGGACATGTTAGAAATGCAAATTCTCAGGCCGAACCAGGACTGAACCGGA
AGATCTGGGGTAGGGTCCCTCCAGGACTGAATCGGAAGATCTGGGGTAGGGTCCCCCCAGGACTGAATCGGAAGATCTGGGGTAGGGTTCCCCCAGGACT
GAATCGGAAGGTCTCGGGTAGGGTCCCTCCAGGTGATCCTGTTACACAGGTTAGAGAACCACAGCATTGGGGTGGCAATTTGACAACTCTTTTTTTTTTT
TTGAGACAGAATCTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCACTCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAACTCTCCTGCC
TCAGCCTCCTGAGTAACTGGGATTACATGCACCCACCATCATGCCTGGCTAATGTTTTGTATTTTTAGAGATGGGGTTTCACTATGTTGGCCAGGCTGGG
ACAATTCTTAAACTGTCATTCTTTACTCACTTATTTGCAGGAATTCTTCTGTAAAGAACTTTTCCTAATCAGCAAGGTTTCCCTGATTGCAATTTGTAGA
CAGAAGGTGGGATAATCGCTGATCTTCCCTCAAGTGTCCACTCCCAGTGTTAGGAGTTAGTGCCCTAGGTACCTCCAAGAGTGACCAATTACATGTGTTT
GGTTGGTTGGTTTTGGCTTTGAAACCATCACTATGAATTCATGGTTTTCATGTATTAGAGACCAAGTCTAGGTGCTTCATGTGCCTACTGCTCCTGGGGC
AGAGCTAGGAAATGTGTCTATGTGAAAGGAACAACAGAGTTAATGCTTATATTTCTATTTCAAATTTAGTATATGGTTTTACACCTTTTTCTCAGAAAAA
TCTTTTTTTATTTTTTGAGATGGAGTTTTGTTCCTGTTGCCCAGGCTAGAGTGCAGTGGCACAATCTAGGCTCACTGCAACCTCCGCCTCCTGGTTCAAG
AGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGCACCTGCCACCATGCCCAGCTAATTTTTGAATTTTAGTAGAGATGGGGTTTCACCATG
TTGGCAAGGCTGGTCTTAAACTCCTGGCCTCAGGTGATCTGTCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTGGCCAGA
AAAATCTTAGTTTTAGCATTAACATAATTAGTTATAGTTTTAACTCCCACCCCAGATAATTTCAAAGGCTTAATACCAATAAGACAAGTAACAAGGAGAT
GATTGATTGAAATTTAGGATTTCAGTGGCTCTATTTGTCTTTAAACTATGGCTCACTAAATCTGCATACTTGAAGTGCTGCGTTCTGGCGATGCTCTGAT
GACACACGAAGTAATAGGCTGTGTGACTGTCACCAGCCTGATGTGCAGTTGGGCTGCAGAACCCTGTGATGCTGCCTAGCCCAGCCAGCCCCAGGTCACT
CCTCAGACTCAAACTTGATTCTGACACCACCAGCACCCGGGATGCTGCCTAGGGGCTTTCTCTGGTGGCAGGAGCATGTCCTGGATTAGGCCGGGGTGCC
CGGAATTGACCATCCTGACCCTGTGGAGCGTGGGCTGGTGAAGGAATGCACCAGCTCCCACAATGAGCACGGGCCCAGCTGCCCACGTGGGATCCGGCTC
CCAGACACCCTGTGCCCTCACCTCTTTCCTGTCTTACCTCCCGCTTCCCTTCAGCTGCTGCTCAGGGCCACCTTCCAAATTTTGGTCTCAGGGTTGGCAC
CTGCAGAAGACAATCCAAGGAATTTAGATTCATTCATTTCAGATACTATTCTTTCAATTTTAGGGACTATCTTAAAACTTAGTTTGGTAATATGTAAAAC
ACTTATAATTTCAAAGTCCAGATATTACTTCAGAGTCTATTTCAGTCTCACTTCCACCATTGACCCCTGTCCTCCACAGCAACCACTTTAGTTTTTTATC
TTTGTACTGTTTTAAGAAAAAGCAAATATATATTTGCATTATATGATATGTACTCTGCCCCTTATCAATAGGTCTTCCTCATCCCTCCTTCTGGTACTGA
GTTCCCCACTGTACGAATTAATGTTCCTAATCCCCTACTGATGGACATTTTGATTGTTTCCAGTTTTACAAATGCCACAGTGAAGAACTTGGTTGCAAAC
ATATTTAGGCGTGAAAAGAACTCTGTGAGTAAAGTCCTTTCATTTTTTTGCCAGAGTTTTTTTTGAGGCAGTCTAGAATTGCTGAGTCAAAGGGCAAATG
CCACATACTTTTGTTAGATGCTGCCAAATCCTCTTCCATGAGGTTGCAATGTTCTGCATTCCACAGTGACGTATGAGAGTCCTTGTATCCCACAGCTTCA
TAAACAAAGCATGATGTCAAACCTGCACATTTACCAATCACACAGGTGAGAAATTTTATCCTAGTTTCACCTTTGTTTTTGGTTCGCATTTTTATGACCA
GCTTTTTTATGGTGTAATGCACAGAAGATAATGAACACACTCTACCCACAAGCTTCTTCCTGTGCCTTTGGAATCTGCTCCTGCCAGTCTGCAGGGAACC
ACGGATCTGCTTTCCGTCACGTAGGAGGCATTCTCGACACCCTCTGTACACAGTATGCACTTTTAAAATTTGGCTTCTCTTACACAGCATAGTGACTTTC
AGATTTATTCAAGCTGCTGCGTGCACCAATAGTCCGCTCCTTCCTAGTGCTGAGGCCCCCATCACATGAGCACAACTGTTTCCTGTGTGTGATGTGTTGT
TCTCTGGCTGTGCACTGCCAAAAAAGACATCATTAAAAAAAAAATCTAAATATAATGTAAAACCTGCCTTGTCTTAGGAAAAGTTTTTCTGGCAGTGGCT
CACACCTATAATCCCAATACTCTGGGAGGCTGAGGCAGGAGGACTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAAGATGGTGAAACCCTGTCTCT
GTAAAAAATATAAAAATTAGCCAGGCATGGTGGCTCACACCTGTAGTCTCAGCTCCTTGGGAGGCTGAGGTGGGAGGATTGCTGGAGCCCCGGAGGTGGA
GGTTGCAGTGAGCCGAGATCACAGCACTGCACTCCAGCCTGGGCAGCATGGCAAGACTCTGTCTCTACCAAGAAAAAAAACAAAAAATTAATATAAGGAA
AAACAAAAGGTTTTTCTTACCAAAAATACACTTTAAGGAACAAATTTATCATATTAAGTTGGTGCAAAAGTAATCGTGGCTTTTACCATTGAAAGTAATG
GCAAAAACTGCAATTACTTTTGCACCAACCTAATATTACTTTCTAATGACAAACTTGGAAATAATTGTCATTGTTCTCTAAAAAGAACAGCCTAAAAATA
AAGCAGCAGCCCATTTACTTCTATGCCAGTTCTTTTAGTATTTGGTTATTTAAACTGGTGGTCCCTAACCTTGTTGGCACCAGGGACTGGTTTCATGGAA
GACACTTTTTCCACGGACAAGTGTGGGGATGGTGGGGATGGTTTGGAGATGAAACGGTTCCATCTCAGATCATCAGCATTAGATTTTCATAAGCGGCGCA
TAACCTAGATCCTTCGCATGTGCAGTTCACAACAGGGTTCCACTCCTATGAGAATCTAATGCCACCACTGATCTGGCAGGAGGCGGAGCTCGCCCAGTAA
TGATATGACAGGGGGCGGATCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACGGTAATGCTCTGCCGGGAGGCGGAGCTCACACGGTAATGCT
CTGACGGGAGGCGGAGCTCACACGGTAATGCTCTGTCGGGAGGCGGAGCTCACACGGTAATGCTGTGACGGGAGGCGGAGCTCACACGGTAATGCTCTGT
CGGGAGGCGGAGCTCACACGGTAATGCTCTGGCGGGAGGCGGAGCTCACACGGTAATGCTCTGACGGGAGGCGG

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.