Detailed information on TCONS_00202368

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding TCONS_00202368 581 275 UTR3 Trans
ENST00000424496 sense_intronic sense intronic TCONS_00202368 547 280 noncoding Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00202368 520 257 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00202368 520 257 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00202368 610 275 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00202368 513 225 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00202368 531 260 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding TCONS_00202368 608 282 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00202368 619 275 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00202368 619 275 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00202368 619 275 UTR3 Trans
TCONS_00187165 NEDD4 binding protein 2 novel protein coding TCONS_00202368 563 295 UTR3 Trans

Sequence

>TCONS_00187165 (5923 nt)
GTAACGCCCGGCCCTGCCCCCAGCAGAGGCGGAAGCGGTGTCGCTCTGAGGGGTCGCCAGTCGCCGCAGGCGCTTCAGCCCAGCGGCGGGCCTTGGCCCT
TGGCTGCCTACTCCTACCGCCCCAGCCCCGGGCGGCCCTGGGCCTGCTGCGGGCGCGGCGCTGCCCGACCAGAGCTTCCTGTGGAACGTCTTCCAGAGGG
TCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACGGACAAAGGAATCATTAGGACAAATTGTTAATACTGCTTCA
TGGTGGAGATGCTTCTGGTTTATTTTGTGGCTACCGCTGTTACTGCTTGGAGTGCCTCACCGAGCCAGGTAACAACTGCGTGCGTGAGCACAGGGAAAGG
CTTCTTGAGAAATGAAAACTAGATTGTAGGTTTAGGAGGGGAATAGGAAGCTTAGCTCTGTACAGCCGAAAGCCTTTTGGTAAGTTGGAGGTCCTTGAAT
TTCCTGGGTGACTGCATCTTGGTGACTTCTCTGAATAGACCTTCGAGGGCACTGGGGGGTGATTGTTGGAGGGCTTGGGGAGCTCAGGCAGCCCTTGTGT
GGGAACGTGGCTGTTACAGGAACTGCAGAAACTGGGACTGGGTTCCTGGGGAAAGGATTGGGGGTGTTGGAGGCGCTGGCAGGGGAGTTATGGGGAGGTG
TTCTTATCAGTGTGCGAATACTGGGCGTTCAGGCAGCGGGAAATCCGGGTCCTTGCGTGTTGTGAGCTCCCTGGAGTTACGTTCTTGCCAGTTTCAGCTC
AATTGATCCCCCTCCCCTGAGCTATCATTGGATACATTTTACTTCATTGAACACCTGACTACTGCTTTAGATTCTGTGTATAGTTTGCCTTTCCAGATCC
GTGCCATTTAAGCTAGAAAAGGGGTCAGTTTTGAGATGTTGTGAAAATGTTGAAAGGCTCCTCGTTATTAGTGGGAAGTATCTGATGTTGCCGGAGACTG
AACTGGGACGCGGGGAGCACTACGGCTGCTAGACACTGCCTCACTGCGCTGTGGGTGGGGGGGGTGCTGGATTCAGCCTTACTGCCTGATTTGTGAGGAT
TTGTGTTTTCAGAGTAACATGTTTACCTTATATTATGACATCCGTTCCTAATATGTGGCGTGTGGGCCACAGATGCTGGTGTATTATTTCACATGCATTT
ATATAGATTGTTTTCAGGGAATTCAGAAATGCTGTTATCTCTACACTAGTGATTGTGCTTTCTTGATTTTTCTCTTTTCATTATTCTTAAATCCTCCTTT
TTTTATTTGCATCTCAGTTCATTTATACTCGGGAAGTGCAAGACATGGCGACTAGAAAGAGATGTCAAGAGAACCCGGAATCCAGTAGGCTACAATTTGG
CAAATCTTAGCTTAAAACTTCCTAAATGTTGACCACAGTGGATGCAAATGGCTCTGTGCATCGTCTGTTCAGTATGGTCAGATGACCACCCAGGTTCAAG
TGGTTTGTCAGCAAGGTGATATGAGCCACACAGAGTGCCCTCCTCAGAGGCCATGTCTCAGAGACGTTTATTTTGAGTGGTTTTCCAGCGAGTGATGCAA
GATTTATGATCCATTTTAACAGCCTGCTTTTTATGCATTTGCTCAAATTTTTAGATTTTAGGTTTAGTTTTAGGTTTTCTGTTAAACTTGCTCAACTAGG
AGTGGTGGTCAAATACTGGACCGCATTAGTATGGTAGCCTGCCCACCTTGGCAGGCTCCACTGGAGTGCTTTGGGGCCGGCCTGGATTCCAGTCCTGGCT
CTACCAGTTTTGTGTCCTTGCTGTTACTGGGAGGGAGTATTGAGGAAATGCATGCGAGGTGCTTCCGTGATTCCTGGCACGGAACAAGTGGTCAGTAATT
GTCAGCTGTGAGTATTAGTAGTAGCTAATACACTGCTACTATTCTTGGCTAACAAGCCAGCTCAAAGCTTTGATGGTTTTCCATTACCTGATGATGGTGA
TGATGGTTTCCACTTACTGAACACTCACATGCTGGGCTAGGCACTTAACCCAAATCCAAGGTCAGCATTATTGTTTGGGGTTTGGGGAGACACCTCCTGC
TCTGACTTGTGTGTTTGGGTTCCTGTATTTTCACCAGAGGGCATTAGTCCTGCCCCAGTTCAGCTGGTCCTCAAAGCATATATAGCTCTTTAACCATCAG
CAAGTGTCAGTCAGAACATAATCTTGATTTCAGCTGCTACTAAATATCTACCAGGAGACTGCTTGAGAGAGAGAATTGCCTGACAGGTGCTGAGTCCACC
ATTCCTGAGATACTTTGAAATCAGTGTCTGGCTTAACCCAAGCTGTGTGTCGGGACCCTCTCACTGTGGTCCCAATGGAGTCGCTTTTGTTAGGCGCCCC
CCTTTACCTTGGGCTCTGAGCTTCCTCTGCCTTTCATCTCTGCAGGATGAAGCTCCACCCGCCCTTCAGGATGCAAAGCCCTCCTCTATAAAGTGCATGC
GGGGCCAGATGCAGTGGCTCACATCTGACCTCCCAACACTTTGGGAGGCCGAGGCAGGGGGATCGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGACAAC
ATTGTGAGACCCTGTTCCTTGAATTGCCCTGGGAGATTTCCTCAGCTTGTACTGGAGGCGTGTGGCCCCATGAAGCCCGTAGTCACCGTTCACCCTGAGA
GACGCTGGCTTTGGGGCTCACACGCCTGCTGTGGGGCAGCCCCAGGAGATGGCCACCCTGTTTCTCCTGGAGCTGGAGCTGCGTGTGTTCTCAGAAACTG
TGGTGGCTGTTCTCTTTTGTTTGCATCTTATAAACCTTTACCTGATTACATTTTCCTCTTCAATTTAGCTGGTAGAAAACTTAAAGTCAGATTGGTGGCT
CGCCAGTAATGAGAGTTTAGAGTAGAGGTAAACTTTATGACATAGTCTTAGACTCTTCACTTTCTCCTCAGCCAACATGATTCACATTTACTTTATTTTG
CTGTACTGTGAGTGTCTTTGTGTTCCCTGAATTCTTTCTGGAATAAGGCAGGTTGTTAGTAAGCACAGGTTTCTGGTCCATCTCATAGCCTCAGGCAGTG
GGCGGTGCTGTCCGTGCTCCCTTTCTGGGTTACCTGCGGTAGCTCTGAAGTTGCAGGGCTGCGATTTGAAGCCTGATTTAGTACACCGTGTTTCTGTTGT
GTTCTGTGGTGGTTTGCTCCTCACATGTGAGCATTCACCGTGGCCCTGTGTTTTTCCACCACACCTCTGCCTGGTGGCATCCTACTGGATGTCTCAGCCG
AGCCACTCTGTTCTGAAGATGCCCTTGTCCTCCACCCCTTTGCTTTGGGCTCTGAGCTTCTTCTGCCTTTCATCTCTGTAGGATGAAGCCCCACCCGCCC
TTCAGGATGCCAGCCTTGGCAACATCGTGAGACCCTGTTTCTACAAAAACTAAACAAGTGTAGTGGTGCACGCCTGTATTCCCAGCTACTTGGGAGGCTG
AGATGGGAAGATCACTTGAGCCTGGGAGGTTGAGGCTGCATTGAGCTGAGATCAAGCCACGGCACTCCAGCCTGGGAGACAGAGCGAAACCCCATCTCAA
AAAAACAAAGAAAGTGGATGCGTGCTGCTCCTGCCATTGGATCATCGCAGCATTTTTCTTTTCTCTGATATGCGCCTTTTTCCTCATCGTGGGGGCTCAT
GTTTTCGTAATTCCCTCTCGCTACTAGATTGTGAGCTGTGTGAAGGAAGGTTCATAGTTGAGTTGTATGTACAGGCACACAAAATTTGTCCTTGGATAGA
CACATATCAATCCACTTCCTTCTCCTCTCTGAATTTCTTTATTTAAAAAAAAAAGTAGAGATGGAGTCTCACTGTCTTGCCCAGGCTGGTGTCAAACTCC
TAGGCTCAAGTGATCCTCCCACCTCTACTAATATGAATTATTAGGCTATGCTAATATGAATTTGTATACTAATATGATTGAAATTAGTTTGACTTCTATA
ATAATTGTTCTCCCAGATTGGGCTTCTGTTTTGATAGTAGAACTAAATTATTAGGCTATTTCAAGAAATTAATATATTACTGGTAGAAAAACTGAAGCTA
CAAAATGGCCTGGTTTCTCACTTCAGTTAAATTTGTGCTTCTGAGTGCTTGTATTCTAGGTGAAACCGCACTGAGAAGGTATTTGTGGCCTATACGCTGA
TTCATTGATTAGACTTCTTTGCACAGGAGAGCTGCTAAAAATTACTGCGGTGAACAGGTACGAAGAAAAAGACTGTTCTCTGCCCTTCTTTTTGCAATAA
AATGTTACAAACTATCTTGAGTTTGATCCCTTTTCGGGTGTTTGGGTTTTTTTTAACATTCACATATTTCTTGGAATTATAAGAAATTAACTTTGTGCTT
CTGAAGTGGGTTTGCCTTAATATAACACTGATGTATTTGTAAGGGGCATTTTTAAAGCTGTACTTTAAAAAATAATAATTCTTACATTCATTTGAAGGTT
TTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGCTGAAGGCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCATTGATCTTGGCTCACTACAACCTCTG
CATCTGGAGATCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGGCTACAGGCACCTGCCACCATGCCCAGCTAATTTTTTGTATTTTTAATAGA
GATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCA
GGGGGCCAACATGGTGAAACCCTATCTCTACTAAAAATACAAAATTAGCCGGGAATGGTGGTGTGCGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCG
TGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGCGATCGCGCCACTGCACTCCAGCCTGGGGGACAGTGAGACTCCATCTCAAAAAAAAA
AAAAAAACACAAAAAAAGAATGGACTAACCCTTGTTTAGGTGTTACAAAATCCAGGCCAGACCAGTCTAAACTTTAATCTCATACCCAGTTCCTAGATGA
GTCCCTTCTCCAGCTCAGGTTCGGCCTAAGCCTCAGGGTTCCTTACTTGGTGGGCACCACCTGCTCCCTTCCCCGCCTTTGTTCCTCTTTTTCCTCTGCT
GGCTCCTCCGGGGTTGGGTGTGTTCAGAGGCAGAGACAGGCTAAAGGTCTTTGGCTTTTAGGTTCTGTTGATGGGTGAGTTCCAGATACTAGCTTTCTCT
TGTAGGATATTTCATTTATTTATCTATTAAAAATATTTATTTAGAACACACCATTCATGTGCCAGACCCTGTTCCAGGCACTGGGGATAGGGTGATAAAT
GAGATCAACAAAAATACCTGCCCACATTAAGCTCCTGTTCTAGGGAAGACAAAAAAGAAAGAAAATACACGTGTCCTTAGTACATTAGAAGGTTCCAAGT
ACTGTAGAGAAAAATAAAGTAGGTTGGACTCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATTACTTGAGCTCAGGAATT
TGAGACCAGCCTGGGCAACATGGCAGATCCTGTCTCTACAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATAAAAT
AAAAATTAGCTGGGTATGGTGGCATGCACCTGTAGTCCCAGCCACTGGGGAGGCTGAGGAGGGAGAATTGCTTCAGCCCAGGGGGTGAAGGCTGCAGTAA
GCCGAGATCGTGCCATTGCACTCCAGCCTGGGTGACACAGCCAGACCCTGTCTCAAAAAAAACGAAAGAAAGAAAATGAAAAAAAGAAAGCAGAGATGGG
GCAAGCAGGGGAAGAGGACTGGTG

Expression



Full and truncated open reading frames discovered in TCONS_00187165

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.