Detailed information on TCONS_00203482

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding TCONS_00203482 582 278 UTR5 Trans
ENST00000513143 podoplanin protein coding TCONS_00203482 563 316 UTR5 Trans
ENST00000553127 spermatogenesis associated, serine-rich ... protein coding TCONS_00203482 554 300 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element bind... novel protein coding TCONS_00203482 532 279 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00203482 511 275 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00203482 510 255 UTR3 Trans

Sequence

>TCONS_00203482 (9115 nt)
ATCCACCATGTGAGGACACAGAGAGAAGACACCATCTATGAACCAGGAAATGGGCCCTCACCAGACACTGAATCTGCTGGTGCCTTGATCTCAGACTTCT<br />GACTCTCCAGAACTGGTCCAAGGACGTAACCAGATCATACAACACGCGCCAGGAAAGCCCAAAAGAGGGGTGATCCCTCGATGGAGGTGCCGCATCAGCG<br />TTTTCTCACGTGGCCTCCGGGGCTCTATGAATGGCAAGAGATTGCATTCCTTCTACTACCCCTCCCAGCCTCCAGCCGGGACAAGGAACTGGAGCAAACT<br />CGGGGCTGCAGTTCCGACTGGACTCGCCCACCTGGGCGCGCCGGCTGCCCAGCCTCCTGAAGCCTCGGGGCTGGGCCCTGCGGTGATGGGCGTGCTGGCC<br />GTCGCAGAGCCCTCTGGGAGTTGTAGTCCGTAGCGGCGAGAGGTTTGACAGCGACCGCGGGCTTGGCGCATTCAGAACTCCAACTCCCGCCGGCCCCTGC<br />GACCCAGGCTATTGCCGCTTCCTGTTTGGACTAGGAGCCCCGCGGTCGCAAATTGCGAGAATTTGGGAAGGGAATCTTTATCTTCTCGTCTAGTTCTCCG<br />AGGTTGAAGGCTCGGCCTGCTCAGAGAAGGAAACTGAGGTCCACCGAGTTGGAGAAACCTACTCAACACCAGAGTTTCCTGAATAAGTTTTTCCCAAGTT<br />CTGTGTTATTCTTTTTGATGAAAGGATACTGGCTTCCCTACAATCATCTTTTCAACTTCTAAAATGTTTAATTTTTTAAATTGAGGTAATGCTTTAAAAA<br />TCAATAAAGCTATAATACAATTCTAAATAGAACTTCTCTACAATATGTTTATTTCTTTCCTAAGCTTTTAATTCTGGTGCTACACCCAGGTTAATTTAAA<br />ATGTATTTTCTGTTGGTATTGTATTTTATTTTATTTTTTGAGACAAGGTCTCACTCTTCCGCCCAGGCTGGACTGCAGTGGTGTGATCATAGCTCACTGA<br />GACCTCAAACCCTCTTGCTCCAACTGTCTTCCCACCTCAGCCTCCTGAGTAGCTGGGACTGTAGGTGAGCACCACCATGCCTGGCATGCATATATATATA<br />TCAATCAAATTTTGTAGAGACACGGTCTTGCCATGTTGCCAGGGTTGGTCTCAACTCTGAATCTCCTGGCCTCAAAGGGTCCTCCTGCCTTAGCCTCCCG<br />AAGTGCTGGGATTACAGGAATGAGCCACCATGCCAGGCCTATTTATATAGAATGTTTTCATTTATTACATCTGGGGAATCATCTTTTCAAGTTAATTAGT<br />CAATTTGACAGTTTTAAACTAAGAAGATTTAACAGATTCTATCAATCCTAACTTCATTCCATCTTAATGTCATAAATTAGTAGGTTAATTTTGAAAAATT<br />CTGCCTTTTAGTTTTAAAACTTAAGACCAAACAAGTCAACCGAATTGTTAATCAGTTTTATTATGTAAAGGAAGGAAGAGAAAGAGCAGGCTTTTGTTTT<br />TTGCTGCTCAACTATTTTAATGAAATTAACAGTAATGAGTAACTTTATCTCAGTTGGTCCCATCTTACTGGGATTTTTGTAACAATTATCACTGAATTAT<br />GTACTTTATAGTCAAGAACATTTTTATGCTATAGATTTTTGAATATGTATAATACATTATATGAATCTGTGTCTCAAAGAGTCAACTTACTTATTCTTTT<br />TATCTTAAAAGAATAAATTTTACACTGATCTATTACTAAGCTAATTTGACAGCTAGAGCTAGCAATTGGTATAGATTTGAGCTGAAAGTGAAATGATGAA<br />CTGAAAATTGGAATTGGTTATTAGCATCCTAATATGTTTTATTATTCAAGTGATTTAGGACAAGTTACTTGACTTCTCTAGGCTTCATAAATGATTTTTT<br />TTTTAACTTTATTGAGGGTAGGGATCATGACTTAAATTTTTTTTCTATGTTTTTCAATACCTCAGTATATTGTAGGGACTTGTTGAGAACTTGTTGAATG<br />AATATATTGTTCAGAGTTTACCATTACTCAGTATTTTAGTTGTCACATCTTAAAATAGATAATCATTTTTACCATCACACTCCCTTCATAAGATATAGAA<br />ATAAAGCCCTTCTTGTTTGGAAATGGTGGTATTTTGGTTTTACTTTTTTTTAAGTTACTGTTGTAAGGTACTACTTTAATATTTTTATTTAACTTTATTT<br />GTTTGTCTTTAGTAGGACTAAGCTAATGAGAGCTTTGACTTGCTTAAACGTTGGGCAGGAAAGCAGAAGAGAAAAGGGAAGTGGAAATCAAAACAACAGA<br />GAAAAGAAAATGCACATATTTGGGAAATAGAACATGTTACTAACATCTGTGTCACATAATAATCAGTGGTAGGTTGACATCATTTGCCTAGATGTTCATG<br />ACTGAAGAAAAATTTTTCACTTAAAAAAGGGAAAACCTCAAGAGGCTGCCTATGTTTAAAAAAAAAAGAGCAAGTATTTTCATTTGGTTTTTGATGGAAA<br />TGATAATACATTTGAACATTTTTTTTCCCATTACAAAGTACTAAATGAGGTCAGACATGGTGGCTCATGCCTTTAATCCTAGCACTTTGGGAAGCTGAGG<br />CAGAAAGATTACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGCAACATAGTGAAACTCCGTCTCTACCAAAAAAAAAAATAGCCAGGCATGGTGGTGCAC<br />ACTTGTAGTCCTAGCTACTTGGGAGGCTGAGGTGGGAGGATCACTGGAGCCCAAGAGGTCGCGGCTGCAGTGAGCCATGATCATGCCACTGCACCACTCC<br />AGCCTGGGTGACACAGTGAGAACCTGTCTCAAAAAAAAAAAAAATTAATGCTAAAATGTAATATGTATAATCTCATTTAATCCTCAAACATTAATTTGTT<br />TAAATTTTGAAGATGCAGAGATAGTCTCATGGAGATTAAATTGTTAATGCTAAGTTACACAGGTAGTGAGTGTTAGATACAGGATTTCTAATTCAAAAAC<br />TTTATTTTCTTCCTACTGTTTCATAAATGTTACATTTAGAAAATTAAGAAAAGTGGACATATGAGTCCGTTAAACAAATATGGCAACAATAAAACTGTAC<br />TTGTTAAGTAGTCTGGGCAGTAACAAGTAACAGAAGAAAGTGAAAGATACAAGGGACTGAGAAAGAAATGACAAAGAACAGGAAAGACAGCATAGCATAG<br />TGGTAAAGAGAACAGGCTCTGGATTTAGACTGCCTCGTTTTTAATTCCAACTCTGCCACTTACTAACTTTGTGATCAGTTACTTCTCTGCTGTGTATACT<br />TATCTATAAAATGAGGATAATAATAGTAATTTACAGGGTAAGTAATAAAGCTACATCCCTTGCTTTTACATGTTAAAACCTATTTATTTCATCAGCATCC<br />CCGACCTCTACCCACTGGGTGTCAGTAGCACTCCCTTTAATTCTAACAACCAATTGGGTAAGGCCAAATTCCTTATTACCCTTTTCTACAATTCTTGACA<br />TGCTGTGTAGAGTACAGTGTAGGGGGATAAGGATAGAAGCAGGGAGCTCCATTAGAATGCTGTTGTGGTAATCTTGGTAAGAAATGGTAGTGATTAGATT<br />CTGGATATATTTGAAGGAAAAGCCAATAAGATTTCCTAATGGGTTGAATGTGGACTGTGAGAAAAAGAAGTCATGAGTGATTCTAAGAATTTTGGCCTGA<br />GCAAGTAGAAAGAGATTTTATCAACTGAAATAGGAAAACACTAGGTGGGGTAGTTTTGGGGGAAGAAAATCAGAAATTCCATTTTGGACATGTTAGGTTT<br />GAGCTGTCTATTACATCTAGCTAAAGATGTTGAGTAGGCAGTTGAATAAGCAAGCCTGAAATTCAAAAAAGAAGTTTAGGCTAGAGATATTAGTGTGGAA<br />ATTGTCATTGCCTAAATTAATAGAACTTTCTACAATGATGGAAAAATGTTTATGTCTATACTGTCTAATATGGTAGACACATGTGGCCACATGTGGATTT<br />TGAGCACTTCAAATGTAGCTAGTGTGACTGAGGTATTGAATTTTTTTATTTTAGTTAATTTAAGTAGCCACACCTAACTAGTGGCCACTGTATTGGGCAG<br />CACGAGCTATGATAGTAAAACCATAAGACTGCATAAGATTACCAAGAGATCAAGGGTAGGTCAAGACTGAACCTTGGAACTCTGCAACTGTAAAGGGATC<br />TGAGAAATGAGAAAGCAGCAAAGGAGACAGAGAAGGAGGAGGGACCAGTGACGTAGGGAAAAAACCTGGAGGCCCAGTGAATCCAGCTTGTCAAGGAGGA<br />AAGTGATTCTTTTGGCAAATATTTCCAATAGGTCAAGTAAGTTAAGGACTGAGAAATAACCCTTGGGGTTACCAATGTGGAGATCTTTAGTGATCCAATA<br />AGAACAGCTTCTGTATAGTGATAGGAAAGATATCATGATTAGCATAGGCTGAAGAAAGAATGAGAGGATCTTATTTATCTTGTGCTTTCTATTTTTTCCC<br />ACCTATTTTATATTTTTTTCTCCTCTTTTGCTTTCCTTTAGTTCAGTTATTTTTTATCCTTCTTCTTTCCCCTCTACTAAATTTAAGGTTATACACTGCT<br />TTCTATTAATAGTTACCTTAAAATAACAACATCAATGTGTGATGTTGATCTGGACAACATAAGGACCTTTGGACATTTTAATTCCAAGACCTTCGTCTGA<br />CTTTTTTTTTCCCCTTTGGTCTGGGATTTTAGTTCTTTTTTTTTTTGGCTTGTTTTATTTTTTTTAATTGGGGTCTCACTCTGTGACAACCAGGCTGGAG<br />TGCAGTGGTGCAGTCTTGGCTCACTGCAACCTCTGCCTCCCTGGTTCAAGTGATTTTCCCACCACAGCCTCCCAAGAAGCTGGAATTACAGGCGCCCACA<br />ACCATGCCTGGCCAATTTTTATGTTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCAGGTCTCGAATTCCTGACCTCAAGTGATCTGCCCACCTC<br />GACCCCCGCAAAGTGTTGGGATTACAGATGTGAGCCACTGTGCCCAGCTGTAATTATTTTTTTCAAACCCTGTAATGTTTATTCTCTTACATTCATTAAA<br />TTTCATAAATCTGTAGATAGGTATCTTTAATGGTCAGCCATTATCTCTACAGATATTACTTCTGTCTTCTTACTTTCTGATTCTCCAATTACATGCTTTT<br />CAGACCATCTCATTCTATCCTTCATGTTTCTTAAACACCTTCCACATTTTCTGCCTTTATTTTTCTCTCTCTGCCACATTCTAGGTAGTTTCTTCTGACT<br />TATCTTCTATGTCGTTAATTTTCTCTTCAACTTTTAAACTCATTCATTGAGTGTTGAATTTGGGCTCTTGAATTTTTTTTTTCCTAAAAATTCACTCTGG<br />TCCTTATTTAAACATACTAAGTCACTTTTTGAAAATGTCTACTTTTTCTGTTATTTATTTAAACATAGGAAACATTATTTTATATTTTTATTTCATTGAT<br />TTTTGTAGTTGAAGTTCTTGTGGGTCTGTTTCTGCTTTTGTTTCTTGTTCTCACTCATAGTACTTTATTTCCTCATATGCTAGGTTATTTTTGACTCACT<br />GTTTGTTGTCTTTAAATGATTGTTAGCAGGACTTCTTTGAGGCCTGCGATGAAGGTGTATCTTTACAGGAAAGATTTACATTTGCTTCTATTGGTTACCT<br />AGAAGTGCTACCAAGCAGGTTAATCTTAAATTACATTCATAGCTTTAAGTGTTCCTTGCAAATTCTCATGAGGTGCAGTTTATGGTAACAAAAAAGCTCA<br />TACACACACATGATGTGGTCAGTAGTTTTGGGTGTTTTTTTATTTATTTTTTTGAGATGAGTCTAGCTCTGTCACCCAGGCTAGAGTGCAGTGGCACGAT<br />CTTGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGCTATTCTCCTACCTCAGCCTTTCAAGTAACTGGGATTACAGGAGCGTGCCACCATGCCTGGCTA<br />TTTTTCTATATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTTTTAAACTCCTGACCTCAAGTGATCCACCCACCTCTGCTTCCCAAAGT<br />GTTGAGATTATAGACGTGAGCCACCACTCCTGGCCAGTTTGTTTTTTTGTTGTTTTTTGTTTGATTTGAGACAGGGTCTCACTCCATCATCCAGGTGGCT<br />GGAGTGCAGTGGCGCAATCATAGCTCACTGTAGCCTCCAAATCCTGGGTTTAAGCAATCCTCCCGCTTCAGCCTCGGCCTCCAAAGTAGCTGAGACTACA<br />GGCATGTGCCACCATGCCCAGCTAGTTTTGTTTGTTTTTTAGTGGAGATGAGGTTGTGCCATTTTGCCCAGGCTAATCTCAGACTCCCAGCCTCAAGCGA<br />TCTGCCTCAGCCTTTCAAAATGCTGTGATTACAGGTGTGGACACTATAGCCTCTGGTCCATTTTAAGAAGACTTCTTTGTAGTTCCCTTGTGAGGGAATA<br />AGCCATTTTACTTCTTGTTAAACCTTACTCTTATTGCAAAGGTCTTTATAGTTCCAGCTGTATTGTGGTGGGGAAGTGGGGAAAGGGGATGATTTATTAT<br />TATAATAATTCCTTACTTTGGATGAACACTGAGCTTTGACTTCTGTTTCCCAAATACTACACAAGGCTTTGAAAACCTCAGCTGGAATTCTTCTGGTACA<br />GCAAATACCCTCCAGGCAGCAGCAGTTTCTTTCAGTCATTTTCCTCTCTTGGTTCTTTAATTTCACCTACAAATGGCCTGATTTTCCTTACTGTTTTTGA<br />TGCTTTTCAAAGATTTTAAAAATATTTTATTCAGTATTTTTAGTTTTTTTTCCGCAGGAAAAATGAGTCCGAATAGCCTAATCTGTTTTATTACTGAAAA<br />TGAATTGCCCCACTTATTTTTTAGTAAGCTGAAAAACAAGAAATAACTCCATTTAAGGTTAGCAAGTTTCTGATAAATATTTCAGGCATATACCTCATTA<br />AGATATCTTCAGCAAATTCCAGTATTTTTCCAATTTGTTATTCATGAATATTTATTAGTGATGGATAATAAAATATTTTAAAATTAAACTAAATTATTTA<br />TCTTCTTTGTGTAGGACTAACTTCTTCAGTGCTTAGAGTGTGAGAAAAATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATC<br />ATGAAAGAGATCCTGGACCTATGAATATCCAGTTTGAGCCATCGGATCTAAGATCCAAAAGGTAAGCATTTAAAATAAAACACATTTCATAATTAGGGTC<br />TTTAATGATTAAAATACATCTAATTATAACCAAACATGTATAGATTTGATTATAAAATATCCACTTTCTTACAGGATTTGTGTGTATACATGTGGAGAGA<br />AGTAAATAGGAATACTATTTACTGGTTTATATTTTTTTTTTTTTTTTTTTTTCACTAAACTCAACATCTCTGTTGGGGGAGTGGTTGGGGTAACTTTACA<br />AAGTAAGGTACATTGATATAATTCATTTAACAAATATGTATTGATTACCCACTTTGCGCAAGGTAATATGCTAAGTGCTCGAGGTAGAAGAGTAAAAGTA<br />ATAGAAAATCTTCATCTTCATTGAGGTAAAATTTCAGCAGATAGTTTAAAATAATTTGAGTTTAAATTTTATTTCATTGTATACCTGTAAAACCCAAAAG<br />AATCCACAAAAAAATTATAAACAGTAAGAGAATTCAATAAAGTAGCTGCTTACAAAACAGGCAAAAATAAATAGACTTCCAATGAGAAAATGTAAGAAAA<br />AATAAAATACATAGAAATGGTCTTGAGTGCTCAATGGCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCT<br />GCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGAT<br />GTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCCGCCGCCATCCCATCTGGGAAGTGAGGAGCGCCTCTTCCCGGCC<br />ACCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCCGCTGCCCATCGTCTGGGATGTGGGGAGCGCCTCTGCCCCGCCGCCTCGTCTGGGATGTGAGGA<br />GCGCCTCTGCCCGGCCGCCACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGAGAGGAGACCCTCCGCCCGGCAGCCGCCC<br />CGTATGAGAAGTGAGGAGCCTCTCCACCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGG<br />GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br />GCCGCCCCGTCCGGGAGGGAGGTGAGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAG<br />CCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGG<br />TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTG<br />GGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCTCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGC<br />CAGCCGCCCCGTCCGTGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGTCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCA<br />GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGC<br />TGCCCCGTCCGGGAG

Expression



Full and truncated open reading frames discovered in TCONS_00203482

In silico ORF/peptide predictions
>peptide 1 (91 aa)
MVTKKLIHTHDVVSSFGCFFIYFFEMSLALSPRLECSGTILAHCSLHLLGSSYSPTSAFQVTGITGACHHAWLFFYIFSRDRVSPCWPGWF

>peptide 2 (72 aa)
MLPGLVSTLNLLASKGPPALASRSAGITGMSHHARPIYIECFHLLHLGNHLFKLISQFDSFKLRRFNRFYQS

>peptide 3 (69 aa)
MFLVETGFHHVSQAGLEFLTSSDLPTSTPAKCWDYRCEPLCPAVIIFFKPCNVYSLTFIKFHKSVDRYL

>peptide 4 (68 aa)
MNGKRLHSFYYPSQPPAGTRNWSKLGAAVPTGLAHLGAPAAQPPEASGLGPAVMGVLAVAEPSGSCSP

>peptide 5 (59 aa)
MEVPHQRFLTWPPGLYEWQEIAFLLLPLPASSRDKELEQTRGCSSDWTRPPGRAGCPAS

>peptide 6 (59 aa)
MPGYFSIFLVETGFHHVGQAGFKLLTSSDPPTSASQSVEIIDVSHHSWPVCFFVVFCLI

>peptide 7 (55 aa)
MYFLLVLYFILFFETRSHSSAQAGLQWCDHSSLRPQTLLLQLSSHLSLLSSWDCR

>peptide 8 (51 aa)
MARDCIPSTTPPSLQPGQGTGANSGLQFRLDSPTWARRLPSLLKPRGWALR

>peptide 9 (50 aa)
MWGAPLPRRLVWDVRSASARPPPRLGGEERLCPAAPSEKRGDPPPGSRPV


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT101508 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 2.0E-23)