Detailed information on TCONS_00203482

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding TCONS_00203482 582 278 UTR5 Trans
ENST00000513143 podoplanin protein coding TCONS_00203482 563 316 UTR5 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00203482 554 300 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00203482 532 279 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00203482 511 275 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00203482 612 277 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00203482 510 255 UTR3 Trans

Sequence

>TCONS_00116668 (9114 nt)
ATCCACCATGTGAGGACACAGAGAGAAGACACCATCTATGAACCAGGAAATGGGCCCTCACCAGACACTGAATCTGCTGGTGCCTTGATCTCAGACTTCT
GACTCTCCAGAACTGGTCCAAGGACGTAACCAGATCATACAACACGCGCCAGGAAAGCCCAAAAGAGGGGTGATCCCTCGATGGAGGTGCCGCATCAGCG
TTTTCTCACGTGGCCTCCGGGGCTCTATGAATGGCAAGAGATTGCATTCCTTCTACTACCCCTCCCAGCCTCCAGCCGGGACAAGGAACTGGAGCAAACT
CGGGGCTGCAGTTCCGACTGGACTCGCCCACCTGGGCGCGCCGGCTGCCCAGCCTCCTGAAGCCTCGGGGCTGGGCCCTGCGGTGATGGGCGTGCTGGCC
GTCGCAGAGCCCTCTGGGAGTTGTAGTCCGTAGCGGCGAGAGGTTTGACAGCGACCGCGGGCTTGGCGCATTCAGAACTCCAACTCCCGCCGGCCCCTGC
GACCCAGGCTATTGCCGCTTCCTGTTTGGACTAGGAGCCCCGCGGTCGCAAATTGCGAGAATTTGGGAAGGGAATCTTTATCTTCTCGTCTAGTTCTCCG
AGGTTGAAGGCTCGGCCTGCTCAGAGAAGGAAACTGAGGTCCACCGAGTTGGAGAAACCTACTCAACACCAGAGTTTCCTGAATAAGTTTTTCCCAAGTT
CTGTGTTATTCTTTTTGATGAAAGGATACTGGCTTCCCTACAATCATCTTTTCAACTTCTAAAATGTTTAATTTTTTAAATTGAGGTAATGCTTTAAAAA
TCAATAAAGCTATAATACAATTCTAAATAGAACTTCTCTACAATATGTTTATTTCTTTCCTAAGCTTTTAATTCTGGTGCTACACCCAGGTTAATTTAAA
ATGTATTTTCTGTTGGTATTGTATTTTATTTTATTTTTTGAGACAAGGTCTCACTCTTCCGCCCAGGCTGGACTGCAGTGGTGTGATCATAGCTCACTGA
GACCTCAAACCCTCTTGCTCCAACTGTCTTCCCACCTCAGCCTCCTGAGTAGCTGGGACTGTAGGTGAGCACCACCATGCCTGGCATGCATATATATATA
TCAATCAAATTTTGTAGAGACACGGTCTTGCCATGTTGCCAGGGTTGGTCTCAACTCTGAATCTCCTGGCCTCAAAGGGTCCTCCTGCCTTAGCCTCCCG
AAGTGCTGGGATTACAGGAATGAGCCACCATGCCAGGCCTATTTATATAGAATGTTTTCATTTATTACATCTGGGGAATCATCTTTTCAAGTTAATTAGT
CAATTTGACAGTTTTAAACTAAGAAGATTTAACAGATTCTATCAATCCTAACTTCATTCCATCTTAATGTCATAAATTAGTAGGTTAATTTTGAAAAATT
CTGCCTTTTAGTTTTAAAACTTAAGACCAAACAAGTCAACCGAATTGTTAATCAGTTTTATTATGTAAAGGAAGGAAGAGAAAGAGCAGGCTTTTGTTTT
TTGCTGCTCAACTATTTTAATGAAATTAACAGTAATGAGTAACTTTATCTCAGTTGGTCCCATCTTACTGGGATTTTTGTAACAATTATCACTGAATTAT
GTACTTTATAGTCAAGAACATTTTTATGCTATAGATTTTTGAATATGTATAATACATTATATGAATCTGTGTCTCAAAGAGTCAACTTACTTATTCTTTT
TATCTTAAAAGAATAAATTTTACACTGATCTATTACTAAGCTAATTTGACAGCTAGAGCTAGCAATTGGTATAGATTTGAGCTGAAAGTGAAATGATGAA
CTGAAAATTGGAATTGGTTATTAGCATCCTAATATGTTTTATTATTCAAGTGATTTAGGACAAGTTACTTGACTTCTCTAGGCTTCATAAATGATTTTTT
TTTTAACTTTATTGAGGGTAGGGATCATGACTTAAATTTTTTTTCTATGTTTTTCAATACCTCAGTATATTGTAGGGACTTGTTGAGAACTTGTTGAATG
AATATATTGTTCAGAGTTTACCATTACTCAGTATTTTAGTTGTCACATCTTAAAATAGATAATCATTTTTACCATCACACTCCCTTCATAAGATATAGAA
ATAAAGCCCTTCTTGTTTGGAAATGGTGGTATTTTGGTTTTACTTTTTTTTAAGTTACTGTTGTAAGGTACTACTTTAATATTTTTATTTAACTTTATTT
GTTTGTCTTTAGTAGGACTAAGCTAATGAGAGCTTTGACTTGCTTAAACGTTGGGCAGGAAAGCAGAAGAGAAAAGGGAAGTGGAAATCAAAACAACAGA
GAAAAGAAAATGCACATATTTGGGAAATAGAACATGTTACTAACATCTGTGTCACATAATAATCAGTGGTAGGTTGACATCATTTGCCTAGATGTTCATG
ACTGAAGAAAAATTTTTCACTTAAAAAAGGGAAAACCTCAAGAGGCTGCCTATGTTTAAAAAAAAAAGAGCAAGTATTTTCATTTGGTTTTTGATGGAAA
TGATAATACATTTGAACATTTTTTTTCCCATTACAAAGTACTAAATGAGGTCAGACATGGTGGCTCATGCCTTTAATCCTAGCACTTTGGGAAGCTGAGG
CAGAAAGATTACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGCAACATAGTGAAACTCCGTCTCTACCAAAAAAAAAAATAGCCAGGCATGGTGGTGCAC
ACTTGTAGTCCTAGCTACTTGGGAGGCTGAGGTGGGAGGATCACTGGAGCCCAAGAGGTCGCGGCTGCAGTGAGCCATGATCATGCCACTGCACCACTCC
AGCCTGGGTGACACAGTGAGAACCTGTCTCAAAAAAAAAAAAAATTAATGCTAAAATGTAATATGTATAATCTCATTTAATCCTCAAACATTAATTTGTT
TAAATTTTGAAGATGCAGAGATAGTCTCATGGAGATTAAATTGTTAATGCTAAGTTACACAGGTAGTGAGTGTTAGATACAGGATTTCTAATTCAAAAAC
TTTATTTTCTTCCTACTGTTTCATAAATGTTACATTTAGAAAATTAAGAAAAGTGGACATATGAGTCCGTTAAACAAATATGGCAACAATAAAACTGTAC
TTGTTAAGTAGTCTGGGCAGTAACAAGTAACAGAAGAAAGTGAAAGATACAAGGGACTGAGAAAGAAATGACAAAGAACAGGAAAGACAGCATAGCATAG
TGGTAAAGAGAACAGGCTCTGGATTTAGACTGCCTCGTTTTTAATTCCAACTCTGCCACTTACTAACTTTGTGATCAGTTACTTCTCTGCTGTGTATACT
TATCTATAAAATGAGGATAATAATAGTAATTTACAGGGTAAGTAATAAAGCTACATCCCTTGCTTTTACATGTTAAAACCTATTTATTTCATCAGCATCC
CCGACCTCTACCCACTGGGTGTCAGTAGCACTCCCTTTAATTCTAACAACCAATTGGGTAAGGCCAAATTCCTTATTACCCTTTTCTACAATTCTTGACA
TGCTGTGTAGAGTACAGTGTAGGGGGATAAGGATAGAAGCAGGGAGCTCCATTAGAATGCTGTTGTGGTAATCTTGGTAAGAAATGGTAGTGATTAGATT
CTGGATATATTTGAAGGAAAAGCCAATAAGATTTCCTAATGGGTTGAATGTGGACTGTGAGAAAAAGAAGTCATGAGTGATTCTAAGAATTTTGGCCTGA
GCAAGTAGAAAGAGATTTTATCAACTGAAATAGGAAAACACTAGGTGGGGTAGTTTTGGGGGAAGAAAATCAGAAATTCCATTTTGGACATGTTAGGTTT
GAGCTGTCTATTACATCTAGCTAAAGATGTTGAGTAGGCAGTTGAATAAGCAAGCCTGAAATTCAAAAAAGAAGTTTAGGCTAGAGATATTAGTGTGGAA
ATTGTCATTGCCTAAATTAATAGAACTTTCTACAATGATGGAAAAATGTTTATGTCTATACTGTCTAATATGGTAGACACATGTGGCCACATGTGGATTT
TGAGCACTTCAAATGTAGCTAGTGTGACTGAGGTATTGAATTTTTTTATTTTAGTTAATTTAAGTAGCCACACCTAACTAGTGGCCACTGTATTGGGCAG
CACGAGCTATGATAGTAAAACCATAAGACTGCATAAGATTACCAAGAGATCAAGGGTAGGTCAAGACTGAACCTTGGAACTCTGCAACTGTAAAGGGATC
TGAGAAATGAGAAAGCAGCAAAGGAGACAGAGAAGGAGGAGGGACCAGTGACGTAGGGAAAAAACCTGGAGGCCCAGTGAATCCAGCTTGTCAAGGAGGA
AAGTGATTCTTTTGGCAAATATTTCCAATAGGTCAAGTAAGTTAAGGACTGAGAAATAACCCTTGGGGTTACCAATGTGGAGATCTTTAGTGATCCAATA
AGAACAGCTTCTGTATAGTGATAGGAAAGATATCATGATTAGCATAGGCTGAAGAAAGAATGAGAGGATCTTATTTATCTTGTGCTTTCTATTTTTTCCC
ACCTATTTTATATTTTTTTCTCCTCTTTTGCTTTCCTTTAGTTCAGTTATTTTTTATCCTTCTTCTTTCCCCTCTACTAAATTTAAGGTTATACACTGCT
TTCTATTAATAGTTACCTTAAAATAACAACATCAATGTGTGATGTTGATCTGGACAACATAAGGACCTTTGGACATTTTAATTCCAAGACCTTCGTCTGA
CTTTTTTTTTCCCCTTTGGTCTGGGATTTTAGTTCTTTTTTTTTTTGGCTTGTTTTATTTTTTTTAATTGGGGTCTCACTCTGTGACAACCAGGCTGGAG
TGCAGTGGTGCAGTCTTGGCTCACTGCAACCTCTGCCTCCCTGGTTCAAGTGATTTTCCCACCACAGCCTCCCAAGAAGCTGGAATTACAGGCGCCCACA
ACCATGCCTGGCCAATTTTTATGTTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCAGGTCTCGAATTCCTGACCTCAAGTGATCTGCCCACCTC
GACCCCCGCAAAGTGTTGGGATTACAGATGTGAGCCACTGTGCCCAGCTGTAATTATTTTTTTCAAACCCTGTAATGTTTATTCTCTTACATTCATTAAA
TTTCATAAATCTGTAGATAGGTATCTTTAATGGTCAGCCATTATCTCTACAGATATTACTTCTGTCTTCTTACTTTCTGATTCTCCAATTACATGCTTTT
CAGACCATCTCATTCTATCCTTCATGTTTCTTAAACACCTTCCACATTTTCTGCCTTTATTTTTCTCTCTCTGCCACATTCTAGGTAGTTTCTTCTGACT
TATCTTCTATGTCGTTAATTTTCTCTTCAACTTTTAAACTCATTCATTGAGTGTTGAATTTGGGCTCTTGAATTTTTTTTTTCCTAAAAATTCACTCTGG
TCCTTATTTAAACATACTAAGTCACTTTTTGAAAATGTCTACTTTTTCTGTTATTTATTTAAACATAGGAAACATTATTTTATATTTTTATTTCATTGAT
TTTTGTAGTTGAAGTTCTTGTGGGTCTGTTTCTGCTTTTGTTTCTTGTTCTCACTCATAGTACTTTATTTCCTCATATGCTAGGTTATTTTTGACTCACT
GTTTGTTGTCTTTAAATGATTGTTAGCAGGACTTCTTTGAGGCCTGCGATGAAGGTGTATCTTTACAGGAAAGATTTACATTTGCTTCTATTGGTTACCT
AGAAGTGCTACCAAGCAGGTTAATCTTAAATTACATTCATAGCTTTAAGTGTTCCTTGCAAATTCTCATGAGGTGCAGTTTATGGTAACAAAAAAGCTCA
TACACACACATGATGTGGTCAGTAGTTTTGGGTGTTTTTTTATTTATTTTTTTGAGATGAGTCTAGCTCTGTCACCCAGGCTAGAGTGCAGTGGCACGAT
CTTGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGCTATTCTCCTACCTCAGCCTTTCAAGTAACTGGGATTACAGGAGCGTGCCACCATGCCTGGCTA
TTTTTCTATATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTTTTAAACTCCTGACCTCAAGTGATCCACCCACCTCTGCTTCCCAAAGT
GTTGAGATTATAGACGTGAGCCACCACTCCTGGCCAGTTTGTTTTTTTGTTGTTTTTTGTTTGATTTGAGACAGGGTCTCACTCCATCATCCAGGTGGCT
GGAGTGCAGTGGCGCAATCATAGCTCACTGTAGCCTCCAAATCCTGGGTTTAAGCAATCCTCCCGCTTCAGCCTCGGCCTCCAAAGTAGCTGAGACTACA
GGCATGTGCCACCATGCCCAGCTAGTTTTGTTTGTTTTTTAGTGGAGATGAGGTTGTGCCATTTTGCCCAGGCTAATCTCAGACTCCCAGCCTCAAGCGA
TCTGCCTCAGCCTTTCAAAATGCTGTGATTACAGGTGTGGACACTATAGCCTCTGGTCCATTTTAAGAAGACTTCTTTGTAGTTCCCTTGTGAGGGAATA
AGCCATTTTACTTCTTGTTAAACCTTACTCTTATTGCAAAGGTCTTTATAGTTCCAGCTGTATTGTGGTGGGGAAGTGGGGAAAGGGGATGATTTATTAT
TATAATAATTCCTTACTTTGGATGAACACTGAGCTTTGACTTCTGTTTCCCAAATACTACACAAGGCTTTGAAAACCTCAGCTGGAATTCTTCTGGTACA
GCAAATACCCTCCAGGCAGCAGCAGTTTCTTTCAGTCATTTTCCTCTCTTGGTTCTTTAATTTCACCTACAAATGGCCTGATTTTCCTTACTGTTTTTGA
TGCTTTTCAAAGATTTTAAAAATATTTTATTCAGTATTTTTAGTTTTTTTTCCGCAGGAAAAATGAGTCCGAATAGCCTAATCTGTTTTATTACTGAAAA
TGAATTGCCCCACTTATTTTTTAGTAAGCTGAAAAACAAGAAATAACTCCATTTAAGGTTAGCAAGTTTCTGATAAATATTTCAGGCATATACCTCATTA
AGATATCTTCAGCAAATTCCAGTATTTTTCCAATTTGTTATTCATGAATATTTATTAGTGATGGATAATAAAATATTTTAAAATTAAACTAAATTATTTA
TCTTCTTTGTGTAGGACTAACTTCTTCAGTGCTTAGAGTGTGAGAAAAATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATC
ATGAAAGAGATCCTGGACCTATGAATATCCAGTTTGAGCCATCGGATCTAAGATCCAAAAGGTAAGCATTTAAAATAAAACACATTTCATAATTAGGGTC
TTTAATGATTAAAATACATCTAATTATAACCAAACATGTATAGATTTGATTATAAAATATCCACTTTCTTACAGGATTTGTGTGTATACATGTGGAGAGA
AGTAAATAGGAATACTATTTACTGGTTTATATTTTTTTTTTTTTTTTTTTTTCACTAAACTCAACATCTCTGTTGGGGGAGTGGTTGGGGTAACTTTACA
AAGTAAGGTACATTGATATAATTCATTTAACAAATATGTATTGATTACCCACTTTGCGCAAGGTAATATGCTAAGTGCTCGAGGTAGAAGAGTAAAAGTA
ATAGAAAATCTTCATCTTCATTGAGGTAAAATTTCAGCAGATAGTTTAAAATAATTTGAGTTTAAATTTTATTTCATTGTATACCTGTAAAACCCAAAAG
AATCCACAAAAAAATTATAAACAGTAAGAGAATTCAATAAAGTAGCTGCTTACAAAACAGGCAAAAATAAATAGACTTCCAATGAGAAAATGTAAGAAAA
AATAAAATACATAGAAATGGTCTTGAGTGCTCAATGGCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCT
GCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGAT
GTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCCGCCGCCATCCCATCTGGGAAGTGAGGAGCGCCTCTTCCCGGCC
ACCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCCGCTGCCCATCGTCTGGGATGTGGGGAGCGCCTCTGCCCCGCCGCCTCGTCTGGGATGTGAGGA
GCGCCTCTGCCCGGCCGCCACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGAGAGGAGACCCTCCGCCCGGCAGCCGCCC
CGTATGAGAAGTGAGGAGCCTCTCCACCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGG
GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA
GCCGCCCCGTCCGGGAGGGAGGTGAGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAG
CCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGG
TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTG
GGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCTCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGC
CAGCCGCCCCGTCCGTGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGTCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCA
GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGC
TGCCCCGTCCGGGAG

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.