Detailed information on TCONS_00203784

lncRNA-RNA interactions

Number of interactions: 102

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000075120 solute carrier family 2 (facilitated glucose transporter), member 3 protein coding TCONS_00203784 516 294 UTR3 Trans
ENST00000227155 CD82 molecule protein coding TCONS_00203784 664 310 UTR3 Trans
ENST00000257287 centrosomal protein 135kDa protein coding TCONS_00203784 547 313 UTR3 Trans
ENST00000299157 IKBKB interacting protein protein coding TCONS_00203784 578 289 UTR3 Trans
ENST00000307792 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein coding TCONS_00203784 632 288 UTR3 Trans
ENST00000310045 dermatan sulfate epimerase-like protein coding TCONS_00203784 622 302 UTR3 Trans
ENST00000323816 growth arrest-specific 7 protein coding TCONS_00203784 595 289 UTR3 Trans
ENST00000336787 RAB27A, member RAS oncogene family protein coding TCONS_00203784 578 323 UTR3 Trans
ENST00000355285 adenomatosis polyposis coli down-regulated 1 protein coding TCONS_00203784 627 312 UTR3 Trans
ENST00000396307 RAB27A, member RAS oncogene family protein coding TCONS_00203784 578 323 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding TCONS_00203784 617 278 UTR3 Trans
ENST00000424496 sense_intronic sense intronic TCONS_00203784 639 285 noncoding Trans
ENST00000437099 growth arrest-specific 7 protein coding TCONS_00203784 595 289 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding TCONS_00203784 583 291 UTR5 Trans
ENST00000477205 calcium/calmodulin-dependent protein kinase II gamma processed transcript TCONS_00203784 619 295 noncoding Trans
ENST00000513143 podoplanin protein coding TCONS_00203784 524 298 UTR5 Trans
ENST00000524750 CD82 molecule protein coding TCONS_00203784 522 241 UTR3 Trans
ENST00000542869 protein tyrosine kinase 6 protein coding TCONS_00203784 636 313 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding TCONS_00203784 628 303 UTR3 Trans
TCONS_00004719 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding TCONS_00203784 664 291 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding TCONS_00203784 664 291 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding TCONS_00203784 655 290 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00203784 612 288 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00203784 732 295 UTR3 Trans
TCONS_00030132 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00203784 619 295 CDS_UTR Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00203784 704 296 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00203784 605 292 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding TCONS_00203784 664 310 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding TCONS_00203784 664 310 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding TCONS_00203784 693 299 UTR5 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding TCONS_00203784 605 295 UTR5 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding TCONS_00203784 677 302 UTR5 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding TCONS_00203784 638 298 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00203784 665 291 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00203784 717 306 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00203784 644 293 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding TCONS_00203784 621 296 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding TCONS_00203784 621 296 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding TCONS_00203784 684 291 noncoding Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding TCONS_00203784 603 292 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding TCONS_00203784 697 299 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding TCONS_00203784 634 292 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00203784 674 296 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00203784 674 296 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00203784 674 296 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00203784 674 296 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00203784 674 296 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00203784 674 296 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00203784 674 296 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding TCONS_00203784 628 301 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00203784 666 296 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00203784 651 296 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding TCONS_00203784 675 298 UTR3 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00203784 603 294 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding TCONS_00203784 603 294 UTR5 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding TCONS_00203784 620 299 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00203784 603 289 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00203784 659 300 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00203784 659 300 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00203784 659 300 UTR5 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00203784 677 297 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding TCONS_00203784 677 297 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding TCONS_00203784 677 297 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding TCONS_00203784 634 291 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding TCONS_00203784 519 291 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding TCONS_00203784 519 291 UTR3 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding TCONS_00203784 604 291 UTR3 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding TCONS_00203784 629 293 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding TCONS_00203784 676 297 UTR3 Trans
TCONS_00152102 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00203784 669 308 UTR3 Trans
TCONS_00152103 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00203784 669 308 UTR3 Trans
TCONS_00152105 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00203784 669 308 UTR3 Trans
TCONS_00152107 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00203784 669 308 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding TCONS_00203784 636 313 UTR3 Trans
TCONS_00160924 protein tyrosine kinase 6 novel protein coding TCONS_00203784 636 313 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00203784 687 296 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00203784 687 296 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding TCONS_00203784 687 296 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding TCONS_00203784 615 295 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding TCONS_00203784 674 295 UTR5 Trans
TCONS_00174266 GRAM domain containing 1C novel protein coding TCONS_00203784 608 292 UTR5 Trans
TCONS_00182611 processed_transcript novel protein coding TCONS_00203784 614 291 UTR3 Trans
TCONS_00182613 processed_transcript novel protein coding TCONS_00203784 614 291 UTR3 Trans
TCONS_00182614 processed_transcript novel protein coding TCONS_00203784 614 291 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 605 295 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 657 291 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 605 295 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 657 291 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 607 305 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 730 296 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 627 283 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00203784 730 296 UTR3 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding TCONS_00203784 697 286 UTR3 Trans
TCONS_00213181 tubby like protein 4 novel protein coding TCONS_00203784 702 298 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00203784 702 298 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding TCONS_00203784 640 295 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00203784 630 286 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00203784 630 286 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00203784 630 286 UTR3 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding TCONS_00203784 617 292 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding TCONS_00203784 669 302 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00203784 666 290 UTR3 Trans

Sequence

>TCONS_00247058 (1740 nt)
TGAGGCAGGAGAATTGCTTGAGCCTGTGAGGCAGAGGTTGCAGTGAGCTGAGACCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTC
AGAGACCTTCCTGGTTCAAGCAATTCTCATGCCTCAGCCTCCGGAGTAGCTGGGATTACAGGTGTGAGCCACCATGCCCAGCTATTTTTTATTTTTTTAA
TTGAGACAGAGTCTTGCTGTCACCCAGACTGGAGTGCAGTGGCTCAGCCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGTCTCA
GCCTCCAGAGTAGCTAGGATTACAGGCATGCACCACCACGCCCAGCAATTTTTTTGTATGTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGT
CGTGAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAATGCAGGGATTACAGGTCACACCACCTTGCCCGGCCGAGGCTTTCAATTTTAGT
ATGTCTGGTTCACTCACTAAGTCTAGAAGAATTTTCAGCCACATTTGTAAGTGGTTTGAGCCAAGGGTAAATGTAGACTAGCCAAACTGATAATTTTAGG
GTTGCATATCTTGCAGATAGGAAGACTAATTTTCTTTCTGTCCTCAGGAGGTAGAAATGTTAAAAACTGAACTTGAGGCATCTCAAAGACAACTCAGAGG
TAAAGAGGAAGCATTGAAAATTCTTCAAAGCATGGCAATACTGGGCAAAGCCACAAGTCATACGCAGGCAGTGCTTCAAAAAACTATGGAACAAAACAGA
TCCTTGGAGAAGGTATTTGGTGCTTTTAGTGTAGACTTATTGAATCCAATAAGCTGTTAAATATAATTTCCCTAAACTCACCATACTAATGGATCTGTCA
CTTGTGCCTACCTTCTGCTAGGTGTGCTTCAGTTCTGATGGTCTTCCCTTTTGGAGTTTACAATCTAAAACAGATTGTCATGTGCACAATGAATTCAGGT
TATTTTTATTTCCCCATGTTAAGGTAGTAGGAGGCCTGCCAAATTGGTACTTCTCATTTCTTCTTCTTTTTTTTTTTTTTTGAGATGGAGTCCTGCTCTG
TCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCTACTCACTGCGAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGGCTCCCAAGTAGCTGGGA
TTACAGGTGCCCGCCACCACGCCCAGCCAATTTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTAACCAGAATGGTCTCGATCTCCTGACCTTGT
AATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACCGTGCCCAGCCCATTTTTCTTCTTAAAAAAAATTTTTTTTTTTAAATCC
TTATCGTTGCCTGGCAGGACGTACGTCTTTCTGACCATCTCATCTTCACTATAAAGGTAGTTAGGAATCATCCTAGATGGTCATGTCTCCTGTGCTTGGT
GTGTTCTCCCTTGATGGGACCATTGAGTTAAGATTTCCAGGAGTGGATTTTGCTTGAGGTCTCTACATGCAGCGGAGGTGGGCACTGAGAAATCTAGGTG
TAGCAGCCCAGCAAATTTTGAAGGCAAACAATTTGAAATTTTTTCTATATTAAGTGAGTTTTGGCAGAGTTGTTTTGAATGCTAAAGAGGCATGTTATAT
GTGTTTGCAAATGTCAGAGATACTTTTAGAGCAATAATTAA

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.