Detailed information on TCONS_00203872

lncRNA-RNA interactions

Number of interactions: 32

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding TCONS_00203872 520 250 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding TCONS_00203872 526 288 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding TCONS_00203872 555 268 UTR3 Trans
ENST00000426391 zinc finger protein 841 protein coding TCONS_00203872 555 268 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00203872 614 280 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding TCONS_00203872 613 280 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00203872 646 297 UTR3 Trans
ENST00000594295 zinc finger protein 841 protein coding TCONS_00203872 555 268 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding TCONS_00203872 520 250 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding TCONS_00203872 600 293 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00203872 646 297 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00203872 600 302 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding TCONS_00203872 648 306 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00203872 648 306 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00203872 514 284 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00203872 605 284 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00203872 605 284 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00203872 605 284 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00203872 605 284 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00203872 598 303 UTR3 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding TCONS_00203872 555 268 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding TCONS_00203872 571 301 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00203872 619 298 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00203872 623 298 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00203872 631 324 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00203872 613 297 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00203872 647 297 UTR5 Trans
TCONS_00232466 tumor suppressor candidate 3 novel protein coding TCONS_00203872 516 282 UTR3 Trans
TCONS_00232467 tumor suppressor candidate 3 novel protein coding TCONS_00203872 516 282 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding TCONS_00203872 611 295 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding TCONS_00203872 602 302 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding TCONS_00203872 602 302 UTR5 Trans

Sequence

>TCONS_00240046 (2602 nt)
AAATTCATTTTACTTCGACAAAGGTTGAAGTATGTAGCAGGCGAGCGTCAGGGACAAGTGCAGCTATCTCTTTGATCACATCGCTTTAAACATTTTTCAG
CTTTAAGCTTGTCTTACAAGTCAGCTCTATCAGTCTATTAATTGTTTCACTGTACCTAATATCTTACACGAAGGCACCTTGAAAAACAGCAGGAGAAAGC
ACATTTGTTTAAGTCCTGCGATGGCTAGCACGGCAGCTAATCTCCTTGCAAATTATAATCATAGTTGTAGTTCATCCATTAGGCTGGAAAAGACAAGATT
CCCAAGTGGCCTTGGTGCCTTTTCCAGTTCCCGGGAGACCCACCAACCCTCGGCGTGTGTTGCCTGCGCACCCGGAGCGTTCTTGCTAATCAGTGAGGAG
CTCAACATAACAGGGAAAAGGAGCACAGGATGCAGCTACTTAGAGGGTGTTGATTGAAAACTTCGATCTCCCCACCCCATCACGGTTGATTTGACGGATT
TCTCACCTCGTTCACAGAGAAAATTTCAATTAAGGCACATGGAGACGGACCTCTACCTGCAATGCCCCCCTTGCACTTGGACAGAACCATGTGACTATTT
ATAAGCTATGACACATGAGCAGACATGACATGACGGGATTGATGGAGCAATGACCTCATCTTTTCTCCTGCCAAATATTATGAAAGAGGACTCAAGTCAC
TCACCTGAGGGACACTGGGTGAAAGTCAGTAATGAAGCTGAAAGGTCGCTAAATGCTGGCAAGTGAGATGGATTATAGTGTCTAGACTTTTTCCTGAGGT
CATTCTATATCCAGCAGATATCTTTCAGTATATAGTCTATTCAGAACAATGTGCTAGTGACTATTGAGTGTGGTTACATTCTTTTTTTTTTTTTTTTTTG
AGATGGAGTCTCACTCTGTCCCCTAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGAGTCAG
CCTCCTGAGTAGCTGAGACTACAGGCACCCACCATCACGGCCAACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCT
TAAACTCCTGACCTTGTAATCTGCCCACCTTGGCTTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCAAGCCCAGCCAGTTACATTCTTTAAACAAGG
AGTGGACGTACCCTGAAACAAGAGATTAGTCAAAGAGATTTTGCTATTCATGGGACCTAAAAGGTGGCTGTACTTCCCTTTACTGCTTTTCCATACACAG
CAATGCACGCTGTATGGGTTCTTATAGGTCAGAGAGTGAAAGAGAACCAGGACCTATAAAAGAATACAAGTCTCTAAAATCAGAAAGTTTATTATTTAAA
AAAATAGTTACGTGCCAGTCTGCTTATAATTTATTTTTATGACTGAGAGTGCCTTTCATAAGCACATTCTGGCAAACTATAAAACAAATAAATTGAAATT
GAATAAAACCTTTAGACATTAGAAGTGTAGCACCAGATTTAGTACATAACTGCAAAACTTAAACATGCAATTTTACATCTGCAAGCACATTAAATTGAAA
GAAACTTTAACTTAATTTAGATACATTAATTGATACAAACTTTTCTGGTATATAGCACTTCTTGGCGCATTGAGTATTCTTAATCTTTAAGGCACATGAA
TATAATACCTTAGGAAAGATCTGTTCTCCACACATTTCCTCTATAAAGTGCCAAAAAAAAAAATAACGAAGAGCCAGTTTGTCTTCCGCATCAGTGTGAT
TTAGCATACATAAATAAGTATCTTTTCACACAAAATAAAAGGTTCAGAACCCAAAGTGTCTGATTTTTATAGTGCTTTTTCTTTCCTTTTAAAAAGATAG
CAAGATGAGGGTAAGAGGTAATTTAAGAGAAGTAATCATCTTCTAACAGCCAGCTTGCAGAAACTAAAACAAATATCAATGATGTAAAAATGTTGTTTTG
ACACTTTGGTAAATGAAAGTGTGAGATGAGTAAGAATATATTATAGGTGCTTGTATATCAAAGGCCTGTGAAAATGGCTGATTATAAAGGAGAAAGTTAA
TGATCTCTAATTGTGTTGTAATGTAAATGCAGTATCACCGTAATGAAGAGAACAGATTTGCATGTTAACAAAAGAAATATTAGAGGAGTGAGTGTAGGAT
GTTTGGGATAATTAATTCCATCCTCCACTCCTACATACATATGCATATACAAACTCAATTCAATTTTAAAGAGAACCCGAAGAACCAAAAATAGACTGAA
CACACTTGATGTTGTATGGGAGCTTAAATTACTATTTTTGTTGTTCTCTGTGACTATCTCATTTAGTTTCTATTGTGTTTGCAGTTTCTTCCAAGGTGAT
TTTTAATGGATTGAGTAATGCATAAAAATTTGCAGAAGTATGCAGAAAGTTTGTATGCAGGGCCATGTAGAGCTTTTATCCTACAGTAAATCCTAGTAGT
TTGCTGGTGCTGTGTGATTTTTTTTGTTTGTTTAGGGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCTTATTTATTCCAT
TTC

Expression



Full and truncated open reading frames discovered in TCONS_00240046

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.