Detailed information on TCONS_00205008

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00205008 557 298 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding TCONS_00205008 529 306 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcript... nonsense mediated decay TCONS_00205008 570 307 CDS_UTR Trans
ENST00000562817 microtubule-associated protein 1 light c... lincRNA TCONS_00205008 531 262 noncoding Trans
TCONS_00104871 hepatic leukemia factor novel protein coding TCONS_00205008 514 302 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00205008 557 298 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon ... novel protein coding TCONS_00205008 539 295 UTR3 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding TCONS_00205008 529 306 UTR3 Trans
TCONS_00222612 carnitine O-octanoyltransferase novel protein coding TCONS_00205008 539 306 UTR3 Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding TCONS_00205008 539 306 UTR3 Trans
TCONS_00222623 carnitine O-octanoyltransferase novel protein coding TCONS_00205008 539 306 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, mem... novel protein coding TCONS_00205008 503 303 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, mem... novel protein coding TCONS_00205008 503 303 UTR3 Trans

Sequence

>TCONS_00205008 (8231 nt)
GTGGACAAATCCCTCTATCATAAACTATGACTTTCCATAAACCTCATAGTTACTCTCCCAAGACAGTTTTCCCAAAGAGCAATCTGACTTTGTTGAGTGG<br />TTTGTTAGGTAACCTGTATATATGCAATTTTAGATATGAGAGAGAGCCTTTAACTCTGGAAAAATATACAGTATTTCCCAAGCATTTGGGTAGTAGAAAG<br />ACTGTTTTCATGCTTTTCCCTAATGAAACTTAATTAACAAATTTTCCATCCTCCCTCATTCCCTACCACTGAATTAGTCTATGTCTAATCAAGTCTAGAA<br />ATGTCAAGGAAATTACCTCTCCCTTTTTAAATTCAGCATCTGGGTGAAATTAACTCTTGAAAAAAAATAGTTTTGATTTGATGGCTGGTTGATAGGCAAT<br />GACAACAGAGGCTATGAGAGTTTTGGGCTCTGCTTACAGAATCATTCACATGGAAAATGACAAGCTGTAACTGCCCAGGTAAAAATCAGAATTCAGCAAC<br />TACTGTTGAGAGTTTTCAAAAATAACTGGAGAGCAAGTTTTCCACAGCCCCCAAGTGAATTTCGGATGGCATTTTATTTTATGTCCTCTTTGGATTCTTT<br />AACTGAGAAATCCCCTAGTTAGGAGGAAAAAAGCAACAACAAAAATGTGTTAGGCATGTGCAAGTGGAGAGTAGATTCTAAGTGAGGATATTGCCCCCTA<br />GTGCTGAAATGTAGCCCAACCAGGAGCACCCCCACAAAGCACAGCTGAATATGGTTATGCAAAAGTCTCAAATTATTCATCTGATTTGACTTATTTGTGG<br />ATGCTCAAAAGAATTAACATATTAGACAGTGTTAGGCAATCTGCAGCTAACAATAACTCTTGCCCGTTTGAGTACCAGTTGGAAAACTTCCAGGGACTGT<br />GATCTTATGTAAGTATAAGGTAGAGGTGATGACACTTTTAGAAGTAGCAGCTCATTTTGGTGAAGAGTTTTGGTTCATGAAGATTTTCTTTCACATTTGT<br />GATAAACTGCCTGGAAGATGGTCTCAGTCTGTTGCCCAGGCTGAGTACTGTGGTGCGATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATT<br />CTCCTGCCTCAGCCTGCTGAGTAGCTGGGATTACAGCACTTCCACTTCTAGAAATTTACCTTGAAGATACAAGATATGGTTTGGCTGTTTCCACGCTCAA<br />ATCTTGAATTTTAGCTCCCATAATTCCTACGTGCTGTGGAAGGAACCCGGTGGCAGAACGTGTAACTTCTCTGGATGCTCTTGCTCTGTAAAAGTAGCTG<br />GACTTGGTGCATTTCATGTGTAGAGGAGTCTTGTTGAAGAAGACCTAGCTGCAATAAGGTGGGTAAGAAAGGGCAGTGTGATGTTATATTAATACACTTC<br />TAACATCTCATAATTGAAAAGTACTTCAAAGACCTTGTTTATAGGAGTGCTACAAAAAGTATATGGAAGCGTTGCTAACAAAAGCCTCATGAAGTGTATG<br />TATGTATCTATATGTATATATGTTTTCCAGATTTTATTTTATGTCTATAAGATTTCAGCCTTCAGTTTGTTCATATTTAAAATAACCATAAGATCTTGGT<br />GTCTTGAAATATACTTCATATAACTTTCATGTCTGAAAAATGTATTATTTGAATTTTTAAAGGGGAATATCCTTTTTAAAATAATTTCAAAAATCTCAAA<br />GGCCAATATCAACCTTGGGGAAATATCTGCAAGTCAGCAAGAAAAAAAAATCACATAGGAAAAATGAGCAAGGGAAAACAATAATTTCCAATATAAAAAT<br />AATAAATGTCTAATGCAGCATGTGAAAAATGTTCATTTATACTTAGGGTATAAATAAAAATTAAGATAACAATAGAATTGAATTTGAAAAGATTAAGGAG<br />ATATAAAGCTATACAAACTGAAAATAATTGTCAGTGCTACAATAATAATGGCTAACATTTATTGAGTGCTTACTATGTGCTAGATACAGTACTTGGTGTT<br />TTATCTTTACTAATGCACTTAATAATAATAAAAAACATTTGTGGTAGATAATGTCAACTCTAATTTTACAGATGAAGAAACTAAAGCAGAATGATGATGA<br />ATAATTGCCCAAGGACATATAGCTAGAAAGAGATGAGCCCAGAGGACTTGACACAATAAACACTATACACACTACACTGGTTTGTGATCTCTTAGGTGGA<br />TAAATACTGCCACAAGTGGCTACTGGGGGTGTATGTTGGTACAAATGTACCAGAAATCAATATTGGGCTCACTTTGGGCTATTGGAACATCTGGTTCAGC<br />TCTGCAGCAGATAATCATCTATGCTTCTCTTGCTTAGAAAACCTCTTTATATCCTTTTTGTTTCCCTAAATATTATTGCTATAACTCCAACTTAAAATTT<br />TACACCCCACATCAACATATATCTGCTAAAGAATTCACTCACCTCATCATTGCTAACTATCATAGTTCAAATCAATTTTATCTTAGAACATCAATCTATT<br />TCAGCTCACTCACATAGAATACATAAGCATAAACAAAATTATTACTGTGCAGATATAAAACCTTAAGCCATAACCAGTCATTTACATTTACACCAAATTA<br />TTTATTATCTCTTGAGGCAACCAATGAATGCGAGACATTGAGAAGGTAAGTGTCTCTGTGACGGAGGAGTAAGATAAAGTCAATACATGAGGTGCTGTCT<br />TGGGAAAGATAAGCCTAGGTAGGAGATGTGGTTAAGAGTCTAGTCATTCAGGGGTACAATACAGGAGCACTGGGCCTTTGGAAATCCAAGCAGGAGAGGA<br />AAAGATGCCCAGGAGGTTGAAATGACCACCATTAGAAGAGATGTGACTATACCAAAGCCGTTCTTTACAACTTTGCCCAGAGCTCTTGCCTGGATGATCT<br />CATGGTGCTGATAACTCAGAAAAAGGAGTCTGCTTGGGGATAGCATGTTTACAATATCTCCCTATGTGAACACCTTGATTAGACAATCGTAATTATCAAC<br />AGCAGTGTTCCTTACCTTTTTTTGCTCCTCTGCACAAAAAAGCCTGTTCCTTAGATCAAATGCACCTTAAGTTATGAGTCATTCCCTAAAGCTGTGCCAG<br />CTTCATTCCTCCTCAAGAAGGTATATCATACACTTTTTCAAGCTGCACATTATCCTCATCCCATCTTCCCGACACACACCACCACCCTTACATGTTTCCC<br />TGACACATGTACCCAGAGAATGTCTGCTCTGGATAAAAAGAAAGAACTTGAAAAAGTCTGATACCATCTGTTTTGCAAATCAGGAACTCCCAAAATTTAA<br />AACAAAACAAAACAGGTTTGTCTGGAGGGAGAGCATGTTCCTTGGTATCAGCTGCTAAAGTCCTTCAAGACAGATGCGAACTGATCTGATCTCCTCTCCA<br />GCCTCCCACCCACCGTCTGGCACTCCCATTCCTTTCAGTGCACTGCCATTGTTTTAAACGGAAATGTAGCCCCTGCTACTTTATTTCTAGATTTATAAAC<br />AGTACACAAGAATATTCTCATGGGCTATGCTTATTTAAATACGGATGTGCTTTATTTTAAAATGGCCGTGTTAAATTACTATACCTGTAATGGAAACAGC<br />TCAAGGTAAGAAAAGTTTCTGAGTCATTCATCTAAAAGGGTTTAGTTAGTTGCAGCTGGAGAAAGCCGCACTCCTGTTAAAGTCTAAAGCCCACTGAGAG<br />GCATTTATCTAAGGGAGAAAGCTTAAGGATAGAAATATGTTTGGGCATTCTAGAAAAAAAAAGCAGCTTCTGTATATTGAAAACAACATAGCAAAAAGAT<br />TGCTTTGGGAAGTAAGGCAGAATCAGATTAAATAAATTTAAAACTTTGTTAGAAAATTAAACAGTAGGCCAGGCGTGATGGCTCACACCTGTAATCCCAG<br />CACTTAGGGAGGCCGAGGCGGGTGGATCACAAGGTCAGGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAACACAAAAATTA<br />GCTGGGCATGGTGGTGGGTGCCTGTAGTCCCAGCTGTTTGGAAGGCTGAGGCAGGAGAGTTGCTTGAACCCGGGAGTTGGAGGTTGCAGTGAGCTGTTGC<br />ACTCCAGCCTGGGTGACAGAGTGAGACTCCACCTCAAAAAAAAAAAAAAAAAAGAATGGAAAATAGTAATTAGAGGCAATTAATAGTCATAATACAAAAT<br />CTATCTAAAATTCAAAATATGTGGATTTTGATAAATCGAAATTGTTGAAATACAGAAGCCCAAAGCTATTATTATAGTAAAATTAAGAAAGAAGTTTTTT<br />TATTTAGAAATGCCTTTTCCTTTGCACTATTGATTTATTTTATCTAGTACATGAATTAACTGATATATTTATTACTTTTTAATATATTCCAATTTTATTT<br />GCATGCTGACAAACATTTCCTTTGGAGTCTTTATTTTTCCCATTTTAAAGCCATCCATGGTTAGTTTAAGTGCACAAGAATTTAAAATGTTGCATAGGAA<br />CAGAAAACCAAATATTGCACGTTCTCACTTGTAAGTGGGAGCTAAACATTGGATACTCATGGACATAAAGATGGGAACTGTGCTACCTTCGTAGTGATAA<br />CTGGGTCATATACGTTTTGAAAATGCATTTCATAGACACTGTGGACTTCTAGATGGGGGAGGGAAAGAGAGGAGCATGGGTTGAAAAACTACCAATTGGG<br />TATTATGCTCACTACCTGGGTGTTGGGATCTGTACTCCAAACCTCAGCATCATAAAATATACTCATGTAACAAAACTGCACATGTACCCCTGCATCTAAA<br />ATAAAAGATAAAATTATTTTAAAACACTTAGGTAGGCTGAGAGAGCTTTCAAAAAGAAGGTAGACATATCTGAATTGGGACTGCTCATCTTTCTGCTGTT<br />AGTAGCTCTACTTTTCATGGGATGCAAGTTGTTATGGTAAAGGGAAGGTGGCTGAAATTGTAACGAGAGGTAGTATGTTGATAATGGATAAGTTTGTTTT<br />AAAGTGATACATAATTTGTCAAAGTGTGCTTTTTAAAAATAGGTTTGATTCATTGAATTGCCTATTTGCTTTATAGGGGCAATAAAATCTCCCAAGTTAT<br />TACAAGTTAAATTGGTCCTTATCACCTTTATGCTTTTCTGGCAATGTTAGGGACAATGACTAATGAAGGACATCTCATTTGAAAGAATATACTCCCTCTA<br />TGTTGAGCTTATGTCTAGTACCAAGGCCTTCAAAGAATCAAATTTCCTGGCACTGAAGCTCAGCCAAAACACAGTTCCTGGGACTGAACTGCTAGGATTA<br />CTGCTAGACTGTCACCAAGAATGGCCTTTCCTGCTTTATCAAATAGTCTTCTCTATCACCTGTTATTTATCCAACAAGGAAATTTCCTGTTTTACTCTTC<br />AGACTCACACCTCAGAATATCTGATTAACTAGAGAAGCTGAAGCAGGAACCCGTAAGACCTTACCTTCTTTCTTGCATAAACTGCAATGATTTGTACTTC<br />ATAAATTATTGATAAAAACAAACTTTCTACCTTGGCAGTGATGACTGGACCATGTACTGACAAACCAGTCAAAGCTAAGCATGCTGTGGTTGAGCATGAG<br />GAAGGCCAGCAGCCTCTGAGATGAACTAGCACGCTCTATTCACTCATTTATTTATTCATTCATTCACTCCTCCATTCAATGAATATTTTTTGAGGGCCCA<br />CCACATTACAAGCATAGTTCTTGACCTTGTGGAAGTTAGAGGTTAGTGAGGAGGCAGTCATAATCATAATAAAATAATCACATAAACAAGGGAGTAATTG<br />TAATGTTGGCATATGCTGTGATAAGACAGTACATAATTTTCTGAGAGCTTGTAATTGGGACATTGACTAGTTCAGGGAAAGCTTGGCTGGAGATGTCAAA<br />CCTGATCTGAGTATGAAGGCTGAATCATGTTAACTAGAAAACAGAGACAAGGAAGAACAGGAATAAATGCTCTTTGTTAGGTAAACAAGAGAAGATGATC<br />TTTCTAGCTCTGTTTTTGTCTCAGAGATACTTAAGGTTTTCTCTGTTGTCTTTGGAACCTGATATTCCCAGCAATGGGAATGCTGAGACTCTTGGTGACT<br />GATGAGGTGACCTCTCATGATTCTTTACATTTCTTTGTGTTAATGCACCATCATCAAAAGTTATTGGCACATATCTCTTCTGTGAGATGCTAAGGCATAG<br />GACAGACTTAATAGTACTTGAATAGTGCAACCAACTTCTCAGAAACCTGTCTTGTTTTTATTTCCATATTCTCATCCTGGGTCTTCCTGAGACCACAGGT<br />CTGCCTGGATCCTTGATTCTGGTGTCCTGTGAAGCCAGTACCTAGAAGGGAGTAGAGGGGCACAGACTGGGTAAAATGCCAACTGCAAGCACAGTGGCCT<br />AACAGGAAAATGGGTTTGATCTATCTTCCTGTTGCTCCAGCCTCAATGATGATTTCAACTTTTATTAAAGTGACAAAAACATTGATGTAATAATATGAAA<br />TACTGGGTGACAGCAGCCTGAGGAATACATGTAGACTCAGGAAATTTGGGTAAAATACCAAATTCACGCACATAGAAGAAAGGTACTAAGAAAGGTGTAA<br />GTCTAGTCAAAGGCAAAGACTGGAAAATTGGAATTCTTTGCAGATTATACTTCGCTTATGATAGCTATAGTCAGCATAAGGAAAATGTAAGTTATGTTGC<br />ATCCTTTCTTTAGAGCACTAGTGAGCAAGCTCAGGCCAGGACCTGCTTTTCGGGATGGTTCTGGTACAGAAACATGGAAGTACTGTTTAATTTATGATTG<br />GCTTTTAGGTGAAGATTCTGCATTGTTTTAAATAAGGTTTGACAAAAATAAGCATTGTCGTATCAGGAGACTTTTTTTCACAAGGAGAAGAGAGTCTAAT<br />GTATTCCTATACATTGCATATTTTAGAATGACATGGATCTTTGTGGCTTCTTAATTTTGTAATTGGCTTGGCTTCTAAGCTTTACTTCTGTACATTAGGA<br />CATTTTAGAAGAAAAGCAGAATTTAAAATAAGTTTAAAAATTTTTTAACTTAATATTTAGAATTGTAAAGAGTTTTTAAATCAATGTATAAGATTGTAAA<br />TTTAAAAAGGATAGTCTCTCCTCATCTGTTCTTGCCCCTATCTACATCCTTGTGTGTCTGGACTTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGAA<br />GCCACAGACCCTCGTGGTGAGTGTTACAGTTCTTAAAGGTGGCGTGTCTGGAGTTTGTTCCTTCTGATGTTCAGATGTGTTAGGAGTTTCTTCCTTCTGG<br />TGGGTTCGTGGTCTTACTGGCTTCATGAGTGAAGCTGCAGCCCTTCCCCGTGACTGTTACAGCTGTTAAGGCGGCACATCTGGAGTTGTTCCTTCCTCCC<br />ATCCGGAGTTGTTCATTCCCCCCAGTGGGTTCGTGGTCTCACTGGCCTCAGGAGAGAAGCTGCAGACCTTCGTGGTGAGTGTTACAGATCATAAAGGCAG<br />TGTGGACCCAAAGAGTGAGCAGCAGCAAGATATATTGCAAAGCGCAAAAGAACAAAGCTTCCACAGTGTGGAAGGGGACCGGAGTCGGTTGCCACTGCTG<br />GCTCAGGCAGCCTGCTTTTAGTCCTTTATCTAGCCCCACCCACATCCTGCTGATTGGTCCATTTTATGGAGAGCTAATTGGTCTGTTTTACAGAGAGCTG<br />ATTGGTCTGTTTTGACAGGGTGCTGATTTGTGTGTTTACAATCCCTGAGCTAGACACAAAAGTTCTCTAAGTCCCCACAGAGCACTGAATGGTGCATTTA<br />CAAACCTTGAGCTAGACACAGGGTGCTGATTAGAGTGTTTACAAACCTTGAGCTAGACATAGAGTGCTGATTGGTGTATTTACAATCCCCTAGCTAGACA<br />TAAAGGTTCTCCAAGTCACCACCAGATTAGCTAGACACAGGGTGCTGATTGGTGCATTTACAAACCTTGAGCTAGACACAGAGTGCTGATTGGTGTATTT<br />ACAATCCCTTAGCTAGACATAAAGATTCTCCAAGTCCCCAGTAGACTCAGGAGCCCAGCTCGCTTCACCTAGAGGATCCCACACCGGGGCTGCAGGTGGA<br />GCTGCCTGCCAGTGCCGTGCCATGCGCCTGCACTCCTCAGCCCTCAGGCAGTTGATGGGATGGGGCCTCCTTAGAGCAGGGGGCAGCGCTCCTAGGGGAG<br />GCTCGGGCTACGCAGGAGCCCACAGCCGGGG

Expression



Full and truncated open reading frames discovered in TCONS_00205008

In silico ORF/peptide predictions
>peptide 1 (94 aa)
MSHSLKLCQLHSSSRRYIIHFFKLHIILIPSSRHTPPPLHVSLTHVPRECLLWIKRKNLKKSDTICFANQELPKFKTKQNRFVWRESMFLGISC

>peptide 2 (89 aa)
MKDISFERIYSLYVELMSSTKAFKESNFLALKLSQNTVPGTELLGLLLDCHQEWPFLLYQIVFSITCYLSNKEISCFTLQTHTSEYLIN

>peptide 3 (68 aa)
MTFHKPHSYSPKTVFPKSNLTLLSGLLGNLYICNFRYEREPLTLEKYTVFPKHLGSRKTVFMLFPNET

>peptide 4 (63 aa)
MTLLEVAAHFGEEFWFMKIFFHICDKLPGRWSQSVAQAEYCGAILAHCNLHLPGSSDSPASAC

>peptide 5 (50 aa)
MYKIVNLKRIVSPHLFLPLSTSLCVWTWWVLGLTDFKNEATDPRGECYSS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT094616 (Evalue: 6.0E-143)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 7.0E-17)