Detailed information on TCONS_00205543

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00006772 lincRNA novel protein coding TCONS_00205543 514 312 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00205543 546 302 UTR3 Trans

Sequence

>TCONS_00116668 (1540 nt)
GGTTGGAAGCCCCGCCCTTCCGAGGAGTTTCCCAAAACCCTGCGCGGCCGGCTTTGACCGCGCTAAGATGGCGACTCCCATGCATCGGCTAATAGCCCGG
AGACAAGCATTCGACACAGAGTTGCAGCCTGTCAAGACCTTTTGGATCCTGATTCAGCCATCCATCGTTATTAGAGACAGTGTTGCCCAGGCTGGTCTCA
AACTCCTGAGCTCGGGTGATCCTGCCTTGGCCTCTCAAAGTGCCAGGATTATAGGCGTGAGCCACTGCGTCCAGCCTCATACCTGAGCTTTAGATGATAT
TTGTGAATGTCGTATTTATAACAATAAAAAACAAACTCCAGAATGTCTGGTGGATATTTTTAATGACTAGGGTCCCAAGCTACCAGTTTCTCAATATGGA
GAAAACAACCTATAAGCTTGGAAAAGAAGACTATGGACCCCCACCGCCAACACCCTCACATATTTTCATTTTTAGGGAAAATCGTGAAAGGCTTTGAAAT
GGACAGAAAGAAAAGACGATTACTGAGTGCTCTGTCTAGTCCAACCTTCCTGGCTATGTGACTCTATGAGGGCCTGCTTCTTTCATTGTCTTTGCACTGT
TTCTCAAATCTTTAAGTCATAGGAAACTTACAGTATTGCAGAAGATTCTTGCCCATAAAAATGCAGCGCAGGCTGGACGTGGTGGCTCACGCCTGTAATC
CCAGCACTTTGGGAGGCCAAGGTGGGCCGAGGCCAAGGATCACCTGAGGTCAGGAGTTCAAGACTAGCCTGGTTAACATGACGAAACCCTGTCTCTACTA
AAAATACAAAAATTAGTAGGGCAGGGTGGCACACCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCACGAGAATCGTTTGAACCTGGGAGGCGGAGGTTG
CAGTGAACCGAGATTGCGCCACTGTACTCCAGCCTGGACGACAGAGGAAGACTCCGTCTCAAAAAAAAGAGAGAGGCCAAGGAGGGAGGATTGCTTCAGC
CCAGGAGTTTGAGACCTGATTGGGCAACATAGTGAGACCTTTTCTCTATTGTAATTAAAAAAAAAAAAAAATCAGCTTGCTGAAGATCATATAGCTATGT
AGTAAAAGAGTAAAGATTTCTTTAAAACATTAAAGAAGTGCTGGGATTGCAGGTGTGAACCAACACACCTGGCCTTGGTTTGTTTACTATCTGTGCACTA
GAGTTTAATTTTGTCTTTTTTTTTTTTTTTTTTGAGACAGATTCTCACTTTGTTGCCCAGACTGGAGTGCTGTGGTGCGATCTCGGCTCACTGCACCCTC
CGCCTCCTGGTTTCAAGCAATTCATAGGCCTCAGCCTCCCACGCAGTTGGGACTACAGGCATGTGCCACAACACCCAGCTAATTTTTTGTATTTTTAGTA
GAGACAGAGTTTTGCCATGTTGGCCAGGCTAGTCTCGAACTCCTGGCTTCAAGTGATCCACCCACCTGGCCTCCTAAAGTGTTGGGATTACAGGAGTGAG
CTACCACACCTGGCTGTCTCTTTAAACTTTGTATAGAATCG

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.