Detailed information on TCONS_00208221

lncRNA-RNA interactions

Number of interactions: 111

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262031 RNA binding motif, single stranded interacting protein 2 protein coding TCONS_00208221 591 306 UTR3 Trans
ENST00000262134 lysophosphatidylcholine acyltransferase 2 protein coding TCONS_00208221 588 306 UTR3 Trans
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding TCONS_00208221 606 308 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00208221 637 300 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00208221 673 301 UTR3 Trans
ENST00000274276 oncostatin M receptor protein coding TCONS_00208221 524 309 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding TCONS_00208221 600 294 UTR3 Trans
ENST00000338758 parvin, beta protein coding TCONS_00208221 604 319 UTR3 Trans
ENST00000370435 opioid growth factor receptor-like 1 protein coding TCONS_00208221 592 291 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding TCONS_00208221 588 301 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding TCONS_00208221 627 302 UTR3 Trans
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding TCONS_00208221 529 306 UTR3 Trans
ENST00000394622 STEAP family member 2, metalloreductase protein coding TCONS_00208221 558 306 UTR3 Trans
ENST00000395811 myosin phosphatase Rho interacting protein protein coding TCONS_00208221 617 301 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00208221 525 306 noncoding Trans
ENST00000413800 galactose-3-O-sulfotransferase 4 protein coding TCONS_00208221 531 296 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding TCONS_00208221 529 306 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding TCONS_00208221 520 314 CDS Trans
ENST00000473091 UBA domain containing 2 processed transcript TCONS_00208221 520 316 noncoding Trans
ENST00000475187 THO complex 5 retained intron TCONS_00208221 560 301 noncoding Trans
ENST00000491277 protein tyrosine phosphatase, non-receptor type 14 processed transcript TCONS_00208221 613 296 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00208221 579 303 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00208221 607 305 CDS_UTR Trans
ENST00000517408 antisense antisense TCONS_00208221 515 312 noncoding Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense TCONS_00208221 511 308 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay TCONS_00208221 530 299 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00208221 547 309 UTR3 Trans
ENST00000569540 transmembrane protein 170A protein coding TCONS_00208221 547 309 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding TCONS_00208221 500 298 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00208221 521 296 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00208221 589 299 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00208221 525 304 UTR3 Trans
TCONS_00007944 kin of IRRE like (Drosophila) novel protein coding TCONS_00208221 516 304 UTR3 Trans
TCONS_00008112 nicastrin novel protein coding TCONS_00208221 505 317 UTR3 Trans
TCONS_00008713 paired related homeobox 1 novel protein coding TCONS_00208221 553 318 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding TCONS_00208221 531 288 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding TCONS_00208221 531 288 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00208221 666 288 UTR3 Trans
TCONS_00051899 RNA binding motif, single stranded interacting protein 2 novel protein coding TCONS_00208221 591 306 UTR3 Trans
TCONS_00061878 transmembrane protein 116 novel protein coding TCONS_00208221 506 317 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding TCONS_00208221 605 315 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00208221 600 308 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00208221 605 315 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding TCONS_00208221 600 308 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00208221 600 308 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00208221 632 304 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding TCONS_00208221 604 289 UTR5 Trans
TCONS_00075339 latent transforming growth factor beta binding protein 2 novel protein coding TCONS_00208221 567 312 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding TCONS_00208221 614 288 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding TCONS_00208221 614 288 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding TCONS_00208221 539 298 UTR3 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00208221 606 308 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00208221 606 308 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00208221 606 308 UTR3 Trans
TCONS_00090805 lysophosphatidylcholine acyltransferase 2 novel protein coding TCONS_00208221 588 306 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00208221 531 304 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00208221 605 303 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding TCONS_00208221 601 303 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00208221 632 295 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00208221 563 308 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding TCONS_00208221 556 306 UTR5 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding TCONS_00208221 609 296 UTR3 Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding TCONS_00208221 517 312 UTR3 Trans
TCONS_00143293 nucleoporin 35kDa novel protein coding TCONS_00208221 540 304 UTR3 Trans
TCONS_00143298 nucleoporin 35kDa novel protein coding TCONS_00208221 540 304 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00208221 616 267 UTR3 Trans
TCONS_00147745 lincRNA novel protein coding TCONS_00208221 513 271 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00208221 637 300 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00208221 673 301 UTR3 Trans
TCONS_00154878 collagen, type VI, alpha 3 novel protein coding TCONS_00208221 600 300 UTR5 Trans
TCONS_00154889 collagen, type VI, alpha 3 novel protein coding TCONS_00208221 600 300 UTR5 Trans
TCONS_00154892 collagen, type VI, alpha 3 novel protein coding TCONS_00208221 600 300 UTR5 Trans
TCONS_00160558 cerebellin 4 precursor novel protein coding TCONS_00208221 562 292 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding TCONS_00208221 518 306 UTR3 Trans
TCONS_00160924 protein tyrosine kinase 6 novel protein coding TCONS_00208221 518 306 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00208221 602 302 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00208221 545 317 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding TCONS_00208221 568 295 UTR3 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding TCONS_00208221 562 314 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00208221 598 271 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00208221 598 271 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00208221 623 296 UTR5 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding TCONS_00208221 559 305 UTR3 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding TCONS_00208221 564 299 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding TCONS_00208221 559 305 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding TCONS_00208221 564 299 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding TCONS_00208221 559 305 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding TCONS_00208221 564 299 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00208221 602 291 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00208221 602 291 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00208221 607 305 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00208221 607 305 UTR3 Trans
TCONS_00199319 sorting nexin 24 novel noncoding TCONS_00208221 513 276 noncoding Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding TCONS_00208221 621 297 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding TCONS_00208221 612 300 UTR3 Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00208221 586 310 UTR3 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding TCONS_00208221 606 314 UTR3 Trans
TCONS_00211163 opioid growth factor receptor-like 1 novel protein coding TCONS_00208221 592 291 UTR3 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding TCONS_00208221 520 314 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding TCONS_00208221 545 290 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding TCONS_00208221 545 290 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding TCONS_00208221 573 304 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding TCONS_00208221 629 305 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding TCONS_00208221 573 304 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding TCONS_00208221 629 305 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding TCONS_00208221 604 307 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00208221 618 294 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00208221 603 293 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00208221 603 293 UTR5 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding TCONS_00208221 600 294 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00208221 612 297 UTR5 Trans

Sequence

>TCONS_00252827 (3572 nt)
GGGAGTGGTTGTATTGTAGCTGCATTGTTGAGTCTCCTGTGTGCCACGTGATCCAGCAGGAGAATCATAACCGGGCTGAGCCCACTCTCTCCCATGCTGA
CAGTGCTCTTAGCAGCCGCGGCCACAACACGACCTCAGTGACAGCAGCCACGGCGGGCCAGGATCTGTGCTAAGGGTTTTCCATGCCTCCGTTGCACGTA
CCCTAACAACCACCCAAGGAGGGGGTGTTGTCTTTGTATCCCAGAACGGTTAAGCAGCTTACTTGGGATCACACAATCCACAGACTTCCCTTGTTGAGGT
GAGGCAGCGCCTTCGACGTCTCTGACTCCTAGGCCAGGTGTGTGTCTAGCTCCGTGATGGAAGGTGCCAGCTTCCCTTGTAAGTGACCAGCATGGGCTCT
GCTTCACCCTTCCGGGCTCCCAGCTTACCCAGACCTTAGCAGTCTGCTGACTCCAGCTTTCAGCAGAGCAGAAACAACGCCTTGGGAAGACTTAAAACAA
CTTTGAATAAGAACCTGCTTGAGAAAGATTTGCCTTACAAGCTAAATGTTACATTTCCACTCAACAGAAAGGTACTGCTGTGTGGCCGTAAAAAGCTGGC
CAAAACCCTGTAACCTTTGCAGTTAGTCATGTTATTTTTGGTTCATGCCAACATGGATCACAGCTGTGACTCAACAGAGCCACTGAAGCAAGAATTCAAA
GAGTTTAAAGAACAGCAAACTCAGAAATGACTTTTTTTTTCTTATGGTGTCATTACGCAACATTTCTTGTCGTTTACCTTTTCTAATTTACCAACTCCAT
ACAGATGAGCTCAGTCGTTGTTTGGCAATTGAAAATCTGAGTTGCGTCAGCACACTTCCCCAAATCCCACTGCAGGCGGAGGATGATGAAGCTTTCCTTT
CTGGGGTGTTTGTTTTACGTAAGTAGTGACTTACTTTTCAGAGGTAAAAAAAAAAAAAAAATCTGTGTTGATATATGTCTCCCTCAAACCAAAAATAGGA
CTGGGGATTGATTTAAACGTTTGCAGTTCCCCATTTGAAGATGACAGAAAGCCCATATCGACTGGTTCTGCCTTTGTTTTTGTTTTTCACTAATTTATAT
TCACAAAATGAAGCCATAAGCTTAGACCTCACCGAATGGAAAACAGGCATGGACTTCAGCAGGCAATATATTAGCATATTTATCAACATCCTTTAGATTT
TTGCTTTCATTTTTTAAATTACCATGTAAACTTGAAGATAACCCCAGTTTTCCCATTTGTGGGAACATAAGAAAGGGAGATGAAAAAAAATAATATTTGT
CCCTTATCTATGAAGTGCTTTTATTTTTTAAATTTTTTTTATTACCTGAAGAACTACATTATCGTCAATATGAAGTGCTGTTTTTTTAAGCATTATGATT
AGACTTAAGGATTCTAAGGACTAAAGTATTAAGGTGTTTTTTGTTGTTATTTGCTAATCATTAATCAACTGTTTTACCTGATTAATTTTCTCTTTGGGAA
AATAGATTGAGATTGTGATCTGGGAGACCAAAGTAGACATTACTTTATCAATGAAGAAGGACCTTAAGGTTAACGAAACAAAAAGTTGGCCAGGTGAGGT
GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGTGGGTGGATCACGAGGTCAGGAGTTCAACACAATCCTGGCCAACATGGTGAAACCCCGTCT
CTACTAAAAATACAAAATTAGCTGGGTACGGAGGCACACACCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGTACCTAGGAGGCGG
AGGTTGCAGTGAGCTGAGATCATGCCAGTGCACTCCAGCCTGTGTGATGGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAGAAAAAAAAATTTTACCTA
TGGATTGAGAGCTTAGGGCCCAGCTGGCCTTGCGAATTTCTAAATTCCTGTAAGAAAATCCACACTCTTGCTAAACTCCCTAACAATAGGAGCTATTGGG
CAAATTATCCTAACTCCAATTTGCAATCCAGACCACTACTATTCTGATTGGACAGAGGACAGGCCTTACAAACATTCTTTTCTGATGAGCAATTGCAGAC
CTTAAGCCAGTTTCAGCCAGCTTATAGAGGCTGCACACACACTGTCTTTGTGTCCTATAGTTCACCTTTTGCCCCAAAGTGAATATGGGATGTATATTAC
ATGTTTGTTTATTCATTGCTCCTGTGCTTGGCTCTCCTCATAAATATGTATAGCTTCTACCCCAAACCTGCTGAATACGTATGACTCTATTGTGTAATAC
AGACTCTCAGAGGAATGAGACCCAACCTGTCCTTCCCCTGTTTGAAGAGAGAGCATCTTTGGTCCATGCTGGAGACTTTCTCTTCCAGCTTGCAACTGAT
ATCACCAATAAAGCTCTTCTTTCTACTATTTAGTCATCCTGGTGGTCTTTTGGATTATAAGTTTTTGTGTCCCATAGTTATACCCATTGCTTAAGCTTGC
CATATAGAAAATGCCATTCATAGACACAGCTCTTCATTTGAGTACTTAAAGGTAAGTTTAAAATGTGGAAACAGGCTGGGCACAGTGGCTCACGCCTGTA
ATCACAGCACTTTGGGAGGCTGAGGCTGGTGGATCACCTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACGTGGTGAAAACCCATCTCTACCAAAAATA
CAAAAATTAGCTGGGCATGGTGGCACGCACCTGTAATCCCAGCTACTCAGCAGGCTGAGGCAGAAGAATCACTTGAACCTGGGAGTCGAAGATGGCAGTG
AGCTGAGATCATGCCATTGCACTCCAGCCTGGGTGACAGAGCGAGAATCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAGTGGAAACACCATTTTGGAG
GTTTTCTTTCAATAACAAAGATGTTGCCCAAAAGGAAATACATTTCTACGATACCCTTTGGGTGTGACAGGGAATTTTATACACCTCCATAAGGAAAGTG
TATAACATTCTTGGGAGCTACCTTCAAGCATTTACTGTACAGGGAAAATGGAAGATGGTCTACTGAATGAGTGTCTCACTGTGGATTGGTCCAGGAACCA
GTTCAGCACATGGTAGCAGCTATTCCTTTTTAAAGTAAACTGATGGAACTTTTGTTTCCTTTTGTTTCCTGAAACCTTTTGTTTCCTGATTCTCTTGTTT
TTGGCAAATTCTTACTTGAAAATATTTTTGAACTAGAATGTTTTGAGCTCGGAGAACCTGCAGAAACCATCTTATTTATGGATGCAGAAGGTAGCACAGA
AAGGTTAAGGAACTTACCTAAAGTTACACAGCTAATTTGTGGCAAAAGTGGGATTCACTTCCAGGTTTAGTATGTCATTTGAATCACGTCATAACCTGCT
TTGGAGAACAAATTGATCTAAAGAATTGACTGTTCCAAAGAATTTGGTTTATAAATCTTAAAATCATTTAGATCACAAAATGTCATGAGAGAAAACACTG
AGAATATAGAGAAATGTTCAGAATATTAGAACAAATTGAAGTTGTACCTATTTCAAGAAAAATAAAATCTTTC

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.