Detailed information on TCONS_00211680

lncRNA-RNA interactions

Number of interactions: 58

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000338758 parvin, beta protein coding TCONS_00211680 661 280 UTR3 Trans
ENST00000381431 sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) protein coding TCONS_00211680 613 294 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00211680 595 286 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00211680 672 294 CDS_UTR Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay TCONS_00211680 553 288 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay TCONS_00211680 548 286 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00211680 596 281 UTR3 Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00211680 529 286 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding TCONS_00211680 607 285 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00211680 576 291 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00211680 647 283 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00211680 610 291 UTR3 Trans
TCONS_00038233 protease, serine, 23 novel protein coding TCONS_00211680 609 295 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding TCONS_00211680 643 289 UTR5 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding TCONS_00211680 669 283 UTR3 Trans
TCONS_00061878 transmembrane protein 116 novel protein coding TCONS_00211680 614 287 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00211680 615 290 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding TCONS_00211680 615 290 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00211680 615 290 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00211680 611 285 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00211680 611 285 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00211680 600 293 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding TCONS_00211680 607 280 UTR3 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding TCONS_00211680 619 289 UTR5 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding TCONS_00211680 612 257 noncoding Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding TCONS_00211680 609 288 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00211680 618 297 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding TCONS_00211680 618 297 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding TCONS_00211680 618 297 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding TCONS_00211680 623 276 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding TCONS_00211680 623 276 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding TCONS_00211680 623 276 UTR3 Trans
TCONS_00152107 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00211680 600 287 UTR5 Trans
TCONS_00152126 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00211680 600 287 UTR5 Trans
TCONS_00152127 cordon-bleu WH2 repeat protein-like 1 novel protein coding TCONS_00211680 600 287 UTR5 Trans
TCONS_00168219 THO complex 5 novel protein coding TCONS_00211680 610 257 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding TCONS_00211680 610 257 UTR3 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00211680 635 290 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00211680 635 290 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding TCONS_00211680 615 292 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding TCONS_00211680 631 290 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding TCONS_00211680 631 290 UTR3 Trans
TCONS_00187473 spermatogenesis associated 18 novel noncoding TCONS_00211680 600 289 noncoding Trans
TCONS_00190276 transmembrane protein 144 novel protein coding TCONS_00211680 631 292 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00211680 672 294 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00211680 672 294 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding TCONS_00211680 647 290 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00211680 593 293 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00211680 576 252 UTR3 Trans
TCONS_00210637 polymerase (DNA directed), eta novel protein coding TCONS_00211680 603 283 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding TCONS_00211680 617 290 UTR5 Trans
TCONS_00225244 family with sequence similarity 115, member C novel protein coding TCONS_00211680 620 289 UTR3 Trans
TCONS_00225246 family with sequence similarity 115, member C novel protein coding TCONS_00211680 620 289 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding TCONS_00211680 614 290 UTR5 Trans
TCONS_00237103 cathepsin B novel protein coding TCONS_00211680 605 283 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00211680 614 290 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00211680 655 291 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding TCONS_00211680 617 282 UTR5 Trans

Sequence

>TCONS_00249092 (6480 nt)
TCCCTCTTTTATCAATTTTAAGTCTTGCTTAAATTATTCCTTAACAATGATGGAATAACTTGGACACAATGATCAAGATAACTAGGAACAATGATCAAGA
ACCTCTTTTGACAAGATCTTTTTGCTGCAAGGACTCTTAAATAAACTAAGTTTAGCAGTGTGCTATATATGGAAAGGCATATTTATCTCCTCAGAAAAAA
AAGTCCTACATAAAAATATTTTTTAAATAATAATTAGTTATGAGCCCTAAAAGAATAATTGTTTAGTAATACTTCTCCTGCAAAAGCAGAAATCAGATTA
AATATTATTCAGTGAGGCCAAGTATATTGTTTCCCTATCTTGTGTTCATACTACCTGTGATTTATGATGTATATTTAGAATGAGGATGCCACAGAGACTA
CATGAATCTACAGTATATAGTGATATCTTAGTTAAAAGTGAATCCACAAAATAAATTACACGGAGACTATGGTTAAGCTCCAAATTATTTGGAAAATAAT
TATAAATGATGTCATTGGTCTAGAAATCTGAAATGGTTTATAGCTTATTAAATTATTGATAACTGAAGAATTTAAAAGTAAATGCTTAATGAAATGATTC
CTTGGACATACACTTTAATAATGCCATTTAAACATGAATATTTTAATTTTTTTTTTGAGATAGGGTCTCACTCAGTCACTCAGGCTGATCACAGTGCACT
ATAGCCTCATACTCCTGAGTTCGGGTGACTCTCCTGCCTTAGCCTGCTGGTAACTGGGACTACAGGTTGGAACCACAGCACCTGGTCAAATATTTTAATT
TTTAACTGTAAATCTATTTGCAGTTAAATATAGCTTTTATTATGTTTGGGAACCAACCTGAGAATAAATAAAAAATAAGATAATGAGAAACTTTATGTGG
TAGTTTTAATAATGACCTCCTGCCCCAAAGATGTTCATGTTCTACAAACCTGAAACTTGTGAATGTGTTACCTTAACTGGCAAAAGGGACTTCGAAGATG
TGATTAAATTAAGTATCTTGAGATGAGAAGATTATCATGGATTATCTCTGTGGTCTGAATGTAAAGGTCCTTATAAAAGAGAGGCAGCAGAATCAGAGGA
AGAGAAGGAGCTGTGATAACAGAAGCAGGAGTCAGAATCAGGGATTTGAAGCTCAAAGCTGTTGGCTTTGAAGATGGAGAAGGAGGCCATGAGAGCCAAG
GAATGCAGGCAACCACTACAAGACAGAAAAGACAAGTCAAGAAATTCTACTCTGGAGCTCAGAAGAAACACAGCCTTGCTGACACCTTGATTTTAGCCAA
GTGAGACTTCTAATCTACAGAATTGTATATAGTAAACTTGTGTTGTTTTAAGCCAGTAAATTTGGGGTAATTTGTTACGGTAGCAATAGGAAACTGACAC
ATATTATACAATAGTTGGACATAACCCTGACAAAGCTATAGTCAAATATCATCAATTCGTGGAGGAAAGATGGTAATATGACGTTATTTTAATGCCTACA
TCAGTTGAGCCAGCTATCAGAGTTAAGAACAATTCCTAGAAAAGTTATCCATGTAGTCAGTCTGTTTTAAACAAATCCAGTGTATGAAAATCATGTTATA
AGGTAAATTGGAAACGTTTATTTCCTTTAACTCTTTAAATGTGTCACACTTTTTGCTTTCTATTTTTAAACTTTGTGTCTCCTACAAAATAATAATCAAA
AACAAAAAAAGTAAGCATAACCCGTAGTTTCTTTCCAAATGCCTTTAAAGTTTCAAAGCAGTAATTACACCTTGCGGCACTACCCGGTTCGGCCGGTGCC
TGGCTGGAGGGCGCCGGAGAGCCTGGAGCAGGGCGCCAGGAGGCCGGAGCAGGAGGAGAAGGAGTAGGAGGAAGTGGTCACTAGCGCGGCGGCCGCCGGC
CCGCAATGGTGCTACCCTGGTTGCTGCTCGAGACTGCGCGCAGGGCGGTCCTCGGGTCCGCGGAGGCTGCGCTCTGCGCCATGAAAATGACAGATGAAAA
TAGAAAAGTGTGGCTGGTCTGAAGGTTTGACGTCAATAAAGGGAAACTGCCACAATTTTTATACTGCTATTTCTAAAGATGTCACTTATAAGGAACTTAA
AAACCTGTTGAATTCTAAAAATATTATGTTAATTGATGTTAGAGAGATATGGGAAATTCTGGAGTATCAAAAAATCCCTGAGTCTATCAATGTACCATTG
GATGAAGTAGGTGAAGCTCTACAGATGAATCCAAGAGACTTCAAAGAGAAGTACAATGAAGTAAAACCATCCAAATCTGACAGCTAGTGTTTTCTTATTT
AGCCGGAGTGAGAAGCAAGAAGGCCCTGGACACAGCAATATCTCTGGGCTTTCACAGGTGTGTAGATGAATGAAAAAATGGATTGATAAATGTATAATCC
AATGTTTCATATATATTACATTTTTATATGTCTATTTAAGAATTTCTTGTAATTACTGTCAGTAAAGGCAGGATAGCAAAACTAAGAGCCTCTTTTCATC
TTACTCAATTTAGAGATAATAGCGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGAT
CAAGACCACCCTGGCCAACATGGTGAAACCCTGTCACTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACACTCCTGTAGTCCCAGCTACTTGGAA
GGCTAAGGCAGGAGAATCGCTTGAACCTGGGAAGCGGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCGATCTGGCAACAGAGTGAGACTCCATC
TCAAAAAAAAAATGTTTATAGCACTATTTGATGTATGTTTTCAGTGCTTAACACTATGCCAGAGGATGGAAAGAATGGGTAACCTGTGAATTTTCAGAGA
AGAAACAAGGAAATTGAATTTTTGGAATACAAGTTGGCTCTTTCCTTGTGTACATGCAGCCTAGGATAGTGGAATGAGCAAAATATTAAAAATCTAGTCC
TGGCACCACTGGTTATGGTAAGGGGATTTTTGTATAAGTCAATTAGTTGTTGAATCATTTTCTCATCTGTAAATTGAAAATGGCACTCTCCCCTGAGATA
ATGCATGTTACTTGCCATGGAAATATAAGGGTCAGGATTCTATGAATTAATTTTTAAGTAGCTTAGTATCATTCAATAGTATTCTAAAATACCAGGTTAC
TTATACTACCTACTCATGTATGACATTTGTGTTAGTATACCTTCTATTCATCAAAGGGGCTATGAGCTAGACCTGCAGATTAACACGCAGATGTGGCCTT
AAAAAAAAATCAGTTAATCTGGGATCCAGAGAAGTAGGTGAAATTTGAACAATGAAAATACATTAACAGCTTCTAAAGATTTATAGCAGTATTATGACCA
GCATGGTAGTGATGAAATTTGCAATTTAAAAAATTAAAATTGGGCCAGTTGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGTG
GATCATGAGGTCAGGAGATCAAGACCATCCTGGCCAACATGGTGAAACCACCCCCCGTCTCTACTAAAATACAAAAAATCAGCCAGGCATGGTGGCGGGT
GCCTGTAGTCCCAGCTACTCGGGAGGCTGAAGCAGGAGAATCATTTGAATCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGCATTACTGCACTCCAGC
CTGGTGACAGTGTGAGACTCCGTCTCACACACACACACACACACACACAAAATAAATAAATAAAATAAAAATTATTAGTATGGGGATAATCAGAACAGTG
GTTGCTGTTCTAGAGGGAAGAAGATTAACTGGAAAAGGCAAGGAGGGTGGCTCAGGCCTATAATCCCAGAACTTTGGGATGCCTAGGCAGGCAGATCGCT
TGAGCTCAGGAGTTCAAGACCAACCCGGGCAACATGGTGAAACCCAGTCTCTACAAAAAAAATACAAAAAATTAGCCAGGCATGGTGGCACGTGCCTGTG
GTCCCAGCCACTTGGGGGGCTAAAGCAGGAGGATCCCTTAAACACTGGAAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCA
GAACAACAACAACAACAAAATTGAAAAACAAAAAAACAAACAAAAAAGGCAAGGAGAGAACTTTCTAGGGTGATGGAAATGTTCTGTATCTTGACTGAGG
TATTGGTACATAGGTATATACATTTGTCAAAACACATTAAACACTTAAATGTACATTTTTGGTAAGTGATTATACCTCAGTTTAAAAATAATGAAAACAG
AAATGCCTAAATGTAAATGACTCCCACTAGCATGGGTATATTCCTTTGGAATGTTAAGTCCTACACTTAATTAGTGTGCTAATGCACTGGTGGCAAAATA
AACCTGTTTTCTCTTGTCTGTGCCTCTTTAGACCCATGTAGTGTATTTTTAGACTCACTCATGCAGTCATTCTTGTAGTACCTATAAGGACAATGTCAGA
AATATATATATTTCTGTCAGTGTGTGTGTGTGTATATATACACATATATGTGTGTGTATATATACACATATATACATATGTATACATATACATATACATA
TATACACACACACATATATGAAGGCAAGGAGAGAACTTTCTAGGGTGATGGAAATGTTCTGTATCTTGACTGAGGTCAAGATATATATATATACACACAC
ACACACATACACATATATAAGAGCCATAATCTCAGGGAGAAGGAAAGTTGTAGACAATGAACCAACATTGAAGTACTGGGCCCATCAAGGAACAGGATTG
TGGGTAAATACATCAGGCTTTTAGTCGGAATCCTGAAAAGGCTATGCCCTAGAAGTAGAGTTGAACCAGAAATTCACAACCCCCACAAGAACTCAAAACA
AGCTTTGAATCAATTAAATCCCTGAATGAATTAAGGTGATCTTCCTAATATCTTAAGGGCCTACCAGAAGTAAATCCTCTCTAGAGAAAGATACCATTAT
CTAGCTAGAACAGAGGTTGGCAATAATCAATCTTTTAGTCTTGTGGCCAATTAGGTTTCTGTTGCAACTGCTCAACTCTGCTGTTGCAGCACAAAAGCAG
CCACAGACAATATATAATGTGACTATTCCAGTAACTCTACTTATGGCCACTTAGGTTTGAATTTTATGTTTCATGTGTTGCCAAATATTATTCTTCATTT
GATTATTTTTCAATCATTTAAACATACAGCAAACATTCTTAAAGCCAGACAAAAACAGGTAGCAGGTCAGATTTGGTCCATGGGGCATAATTTGTAGATC
CCTGAGCTACAGCCACAAATTTTCCTTACAATTTTTCACATACAATTTCACCTTACAATTTTCACATACAATTTCAGGTATTCTATCAAAAATTAATAGG
CACGGCAGTCAATAGGACCTTATGATTGAGAAATAATGGAAAAACAAGACAAGAGAAACAAATCCACAGAAGATCTACAGATTGGAGTTTTCAGACACAG
ACTTTAAAATAACTGTGATTAATATATTCAGTAACTTAGATAACAAAATTACAGTAACTGAAATTAAACACCCAATAGAAGGTAGATAGGTTTAATGGCC
AATTAGACACACCTGATGACAGGATTAGTGAAAATGGAAAAATCAGAGGTACATGTATTAACATGGATGACTCTTACAATGTTGAGGGAAAAAAGCAAAT
TACAGAAACATATACTGTATAGTTTTTGTTTGTTTGTTTGTTTTTTAAGACAAGCTTTTTCACTGTTACCCAGGCTGAAATGCAGTGGCAAGATCACAGC
TCATTGCAACCTATACCTCCTGGGCTGAAGCAATCCTCCCACCTCAGCCTCCAGAATAGCTGGGACTACAGGCACGCACCACCACACCTGGATAGTTTTT
TCACTTTCTGTAGAGACAGGGTCTCGCTATGTTGCCCAGGTTAGTCTCGAACTCCTAGCCTCAACTGATCCTACTGCTTCTGCCTCCCAAAGCACTGGAA
TTACAGGCATGAGACACCATGCCTGGCCAGTATAGTTTTTAAACATACAAAATATATTATTATTTAGGCATATGGACATATATAGTGTAAGTATAAATAA
ATTATAAAAATATCTACTTCTGAATGGTTTCTAATGGGGGAAGGGAGACGAACACAATAGGCTTTAACAGTATTGTTGACAATTTTATTTAATATGTTTG
GTAGGTAAGCACTTATTTTTACCTTTTGTATGCATGGGACAGGGACTGTTGTCCCCACTTGGCTACACTTGAACAAGACTATATACCTTTGGATTCCTGG
TACCCTTTTTTTTTTTTTTTTAAGAAAAAAACTTGATAATGTATTCTATTTACCCAAATAAACAAAGGGTTAATAAATTAGAATAATGTATCTTCTATAT
TAGATCGAACTTAGAAAGACAATTTTAGTTGTCATTCTGATACAAAGATTTAACAAATTTTATGTGTGTATATACATATAT

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.