Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000338758 | parvin, beta | protein coding | TCONS_00211680 | 661 | 280 | UTR3 | Trans | |
ENST00000381431 | sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) | protein coding | TCONS_00211680 | 613 | 294 | UTR3 | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | TCONS_00211680 | 595 | 286 | CDS | Trans | |
ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | TCONS_00211680 | 672 | 294 | CDS_UTR | Trans | |
ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | TCONS_00211680 | 553 | 288 | CDS_UTR | Trans | |
ENST00000553936 | gephyrin | nonsense mediated decay | TCONS_00211680 | 548 | 286 | CDS_UTR | Trans | |
ENST00000568559 | transmembrane protein 170A | nonsense mediated decay | TCONS_00211680 | 596 | 281 | UTR3 | Trans | |
ENST00000568559 | transmembrane protein 170A | nonsense mediated decay | TCONS_00211680 | 529 | 286 | UTR3 | Trans | |
ENST00000607772 | CNKSR family member 3 | protein coding | TCONS_00211680 | 607 | 285 | UTR3 | Trans | |
ENST00000620139 | melanoregulin | protein coding | TCONS_00211680 | 576 | 291 | UTR3 | Trans | |
TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | TCONS_00211680 | 647 | 283 | UTR3 | Trans | |
TCONS_00030591 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | TCONS_00211680 | 610 | 291 | UTR3 | Trans | |
TCONS_00038233 | protease, serine, 23 | novel protein coding | TCONS_00211680 | 609 | 295 | UTR3 | Trans | |
TCONS_00050195 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | TCONS_00211680 | 643 | 289 | UTR5 | Trans | |
TCONS_00053851 | transmembrane protein 263 | novel protein coding | TCONS_00211680 | 669 | 283 | UTR3 | Trans | |
TCONS_00061878 | transmembrane protein 116 | novel protein coding | TCONS_00211680 | 614 | 287 | UTR3 | Trans | |
TCONS_00065094 | UBA domain containing 2 | novel protein coding | TCONS_00211680 | 615 | 290 | UTR5 | Trans | |
TCONS_00065097 | UBA domain containing 2 | novel protein coding | TCONS_00211680 | 615 | 290 | UTR3 | Trans | |
TCONS_00065103 | UBA domain containing 2 | novel protein coding | TCONS_00211680 | 615 | 290 | UTR5 | Trans | |
TCONS_00107864 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00211680 | 611 | 285 | UTR3 | Trans | |
TCONS_00107867 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | TCONS_00211680 | 611 | 285 | UTR3 | Trans | |
TCONS_00118919 | potassium channel tetramerization domain containing 1 | novel protein coding | TCONS_00211680 | 600 | 293 | UTR3 | Trans | |
TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | TCONS_00211680 | 607 | 280 | UTR3 | Trans | |
TCONS_00132233 | zinc finger protein 43 | novel protein coding | TCONS_00211680 | 619 | 289 | UTR5 | Trans | |
TCONS_00132247 | zinc finger protein 43 | novel noncoding | TCONS_00211680 | 612 | 257 | noncoding | Trans | |
TCONS_00140732 | NCK adaptor protein 2 | novel protein coding | TCONS_00211680 | 609 | 288 | UTR5 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00211680 | 618 | 297 | UTR3 | Trans | |
TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00211680 | 618 | 297 | UTR3 | Trans | |
TCONS_00147106 | ATPase family, AAA domain containing 2B | novel protein coding | TCONS_00211680 | 618 | 297 | UTR3 | Trans | |
TCONS_00148698 | WD repeat containing planar cell polarity effector | novel noncoding | TCONS_00211680 | 623 | 276 | noncoding | Trans | |
TCONS_00148704 | WD repeat containing planar cell polarity effector | novel protein coding | TCONS_00211680 | 623 | 276 | UTR3 | Trans | |
TCONS_00148705 | WD repeat containing planar cell polarity effector | novel protein coding | TCONS_00211680 | 623 | 276 | UTR3 | Trans | |
TCONS_00152107 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00211680 | 600 | 287 | UTR5 | Trans | |
TCONS_00152126 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00211680 | 600 | 287 | UTR5 | Trans | |
TCONS_00152127 | cordon-bleu WH2 repeat protein-like 1 | novel protein coding | TCONS_00211680 | 600 | 287 | UTR5 | Trans | |
TCONS_00168219 | THO complex 5 | novel protein coding | TCONS_00211680 | 610 | 257 | UTR3 | Trans | |
TCONS_00168220 | THO complex 5 | novel protein coding | TCONS_00211680 | 610 | 257 | UTR3 | Trans | |
TCONS_00173724 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | TCONS_00211680 | 635 | 290 | UTR5 | Trans | |
TCONS_00173729 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | TCONS_00211680 | 635 | 290 | UTR5 | Trans | |
TCONS_00185321 | transferrin receptor | novel protein coding | TCONS_00211680 | 615 | 292 | UTR5 | Trans | |
TCONS_00185516 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00211680 | 631 | 290 | UTR3 | Trans | |
TCONS_00185519 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00211680 | 631 | 290 | UTR3 | Trans | |
TCONS_00187473 | spermatogenesis associated 18 | novel noncoding | TCONS_00211680 | 600 | 289 | noncoding | Trans | |
TCONS_00190276 | transmembrane protein 144 | novel protein coding | TCONS_00211680 | 631 | 292 | UTR3 | Trans | |
TCONS_00194682 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00211680 | 672 | 294 | UTR3 | Trans | |
TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00211680 | 672 | 294 | UTR3 | Trans | |
TCONS_00202828 | myotubularin related protein 12 | novel protein coding | TCONS_00211680 | 647 | 290 | UTR3 | Trans | |
TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | TCONS_00211680 | 593 | 293 | UTR3 | Trans | |
TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | TCONS_00211680 | 576 | 252 | UTR3 | Trans | |
TCONS_00210637 | polymerase (DNA directed), eta | novel protein coding | TCONS_00211680 | 603 | 283 | UTR3 | Trans | |
TCONS_00222403 | protein tyrosine phosphatase, non-receptor type 12 | novel protein coding | TCONS_00211680 | 617 | 290 | UTR5 | Trans | |
TCONS_00225244 | family with sequence similarity 115, member C | novel protein coding | TCONS_00211680 | 620 | 289 | UTR3 | Trans | |
TCONS_00225246 | family with sequence similarity 115, member C | novel protein coding | TCONS_00211680 | 620 | 289 | UTR3 | Trans | |
TCONS_00235281 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 | novel protein coding | TCONS_00211680 | 614 | 290 | UTR5 | Trans | |
TCONS_00237103 | cathepsin B | novel protein coding | TCONS_00211680 | 605 | 283 | UTR5 | Trans | |
TCONS_00239255 | tumor protein D52 | novel protein coding | TCONS_00211680 | 614 | 290 | UTR5 | Trans | |
TCONS_00239255 | tumor protein D52 | novel protein coding | TCONS_00211680 | 655 | 291 | UTR3 | Trans | |
TCONS_00249092 | transmembrane protein 245 | novel protein coding | TCONS_00211680 | 617 | 282 | UTR5 | Trans |
>TCONS_00249092 (6480 nt)
TCCCTCTTTTATCAATTTTAAGTCTTGCTTAAATTATTCCTTAACAATGATGGAATAACTTGGACACAATGATCAAGATAACTAGGAACAATGATCAAGA
ACCTCTTTTGACAAGATCTTTTTGCTGCAAGGACTCTTAAATAAACTAAGTTTAGCAGTGTGCTATATATGGAAAGGCATATTTATCTCCTCAGAAAAAA
AAGTCCTACATAAAAATATTTTTTAAATAATAATTAGTTATGAGCCCTAAAAGAATAATTGTTTAGTAATACTTCTCCTGCAAAAGCAGAAATCAGATTA
AATATTATTCAGTGAGGCCAAGTATATTGTTTCCCTATCTTGTGTTCATACTACCTGTGATTTATGATGTATATTTAGAATGAGGATGCCACAGAGACTA
CATGAATCTACAGTATATAGTGATATCTTAGTTAAAAGTGAATCCACAAAATAAATTACACGGAGACTATGGTTAAGCTCCAAATTATTTGGAAAATAAT
TATAAATGATGTCATTGGTCTAGAAATCTGAAATGGTTTATAGCTTATTAAATTATTGATAACTGAAGAATTTAAAAGTAAATGCTTAATGAAATGATTC
CTTGGACATACACTTTAATAATGCCATTTAAACATGAATATTTTAATTTTTTTTTTGAGATAGGGTCTCACTCAGTCACTCAGGCTGATCACAGTGCACT
ATAGCCTCATACTCCTGAGTTCGGGTGACTCTCCTGCCTTAGCCTGCTGGTAACTGGGACTACAGGTTGGAACCACAGCACCTGGTCAAATATTTTAATT
TTTAACTGTAAATCTATTTGCAGTTAAATATAGCTTTTATTATGTTTGGGAACCAACCTGAGAATAAATAAAAAATAAGATAATGAGAAACTTTATGTGG
TAGTTTTAATAATGACCTCCTGCCCCAAAGATGTTCATGTTCTACAAACCTGAAACTTGTGAATGTGTTACCTTAACTGGCAAAAGGGACTTCGAAGATG
TGATTAAATTAAGTATCTTGAGATGAGAAGATTATCATGGATTATCTCTGTGGTCTGAATGTAAAGGTCCTTATAAAAGAGAGGCAGCAGAATCAGAGGA
AGAGAAGGAGCTGTGATAACAGAAGCAGGAGTCAGAATCAGGGATTTGAAGCTCAAAGCTGTTGGCTTTGAAGATGGAGAAGGAGGCCATGAGAGCCAAG
GAATGCAGGCAACCACTACAAGACAGAAAAGACAAGTCAAGAAATTCTACTCTGGAGCTCAGAAGAAACACAGCCTTGCTGACACCTTGATTTTAGCCAA
GTGAGACTTCTAATCTACAGAATTGTATATAGTAAACTTGTGTTGTTTTAAGCCAGTAAATTTGGGGTAATTTGTTACGGTAGCAATAGGAAACTGACAC
ATATTATACAATAGTTGGACATAACCCTGACAAAGCTATAGTCAAATATCATCAATTCGTGGAGGAAAGATGGTAATATGACGTTATTTTAATGCCTACA
TCAGTTGAGCCAGCTATCAGAGTTAAGAACAATTCCTAGAAAAGTTATCCATGTAGTCAGTCTGTTTTAAACAAATCCAGTGTATGAAAATCATGTTATA
AGGTAAATTGGAAACGTTTATTTCCTTTAACTCTTTAAATGTGTCACACTTTTTGCTTTCTATTTTTAAACTTTGTGTCTCCTACAAAATAATAATCAAA
AACAAAAAAAGTAAGCATAACCCGTAGTTTCTTTCCAAATGCCTTTAAAGTTTCAAAGCAGTAATTACACCTTGCGGCACTACCCGGTTCGGCCGGTGCC
TGGCTGGAGGGCGCCGGAGAGCCTGGAGCAGGGCGCCAGGAGGCCGGAGCAGGAGGAGAAGGAGTAGGAGGAAGTGGTCACTAGCGCGGCGGCCGCCGGC
CCGCAATGGTGCTACCCTGGTTGCTGCTCGAGACTGCGCGCAGGGCGGTCCTCGGGTCCGCGGAGGCTGCGCTCTGCGCCATGAAAATGACAGATGAAAA
TAGAAAAGTGTGGCTGGTCTGAAGGTTTGACGTCAATAAAGGGAAACTGCCACAATTTTTATACTGCTATTTCTAAAGATGTCACTTATAAGGAACTTAA
AAACCTGTTGAATTCTAAAAATATTATGTTAATTGATGTTAGAGAGATATGGGAAATTCTGGAGTATCAAAAAATCCCTGAGTCTATCAATGTACCATTG
GATGAAGTAGGTGAAGCTCTACAGATGAATCCAAGAGACTTCAAAGAGAAGTACAATGAAGTAAAACCATCCAAATCTGACAGCTAGTGTTTTCTTATTT
AGCCGGAGTGAGAAGCAAGAAGGCCCTGGACACAGCAATATCTCTGGGCTTTCACAGGTGTGTAGATGAATGAAAAAATGGATTGATAAATGTATAATCC
AATGTTTCATATATATTACATTTTTATATGTCTATTTAAGAATTTCTTGTAATTACTGTCAGTAAAGGCAGGATAGCAAAACTAAGAGCCTCTTTTCATC
TTACTCAATTTAGAGATAATAGCGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGAT
CAAGACCACCCTGGCCAACATGGTGAAACCCTGTCACTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACACTCCTGTAGTCCCAGCTACTTGGAA
GGCTAAGGCAGGAGAATCGCTTGAACCTGGGAAGCGGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCGATCTGGCAACAGAGTGAGACTCCATC
TCAAAAAAAAAATGTTTATAGCACTATTTGATGTATGTTTTCAGTGCTTAACACTATGCCAGAGGATGGAAAGAATGGGTAACCTGTGAATTTTCAGAGA
AGAAACAAGGAAATTGAATTTTTGGAATACAAGTTGGCTCTTTCCTTGTGTACATGCAGCCTAGGATAGTGGAATGAGCAAAATATTAAAAATCTAGTCC
TGGCACCACTGGTTATGGTAAGGGGATTTTTGTATAAGTCAATTAGTTGTTGAATCATTTTCTCATCTGTAAATTGAAAATGGCACTCTCCCCTGAGATA
ATGCATGTTACTTGCCATGGAAATATAAGGGTCAGGATTCTATGAATTAATTTTTAAGTAGCTTAGTATCATTCAATAGTATTCTAAAATACCAGGTTAC
TTATACTACCTACTCATGTATGACATTTGTGTTAGTATACCTTCTATTCATCAAAGGGGCTATGAGCTAGACCTGCAGATTAACACGCAGATGTGGCCTT
AAAAAAAAATCAGTTAATCTGGGATCCAGAGAAGTAGGTGAAATTTGAACAATGAAAATACATTAACAGCTTCTAAAGATTTATAGCAGTATTATGACCA
GCATGGTAGTGATGAAATTTGCAATTTAAAAAATTAAAATTGGGCCAGTTGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGTG
GATCATGAGGTCAGGAGATCAAGACCATCCTGGCCAACATGGTGAAACCACCCCCCGTCTCTACTAAAATACAAAAAATCAGCCAGGCATGGTGGCGGGT
GCCTGTAGTCCCAGCTACTCGGGAGGCTGAAGCAGGAGAATCATTTGAATCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGCATTACTGCACTCCAGC
CTGGTGACAGTGTGAGACTCCGTCTCACACACACACACACACACACACAAAATAAATAAATAAAATAAAAATTATTAGTATGGGGATAATCAGAACAGTG
GTTGCTGTTCTAGAGGGAAGAAGATTAACTGGAAAAGGCAAGGAGGGTGGCTCAGGCCTATAATCCCAGAACTTTGGGATGCCTAGGCAGGCAGATCGCT
TGAGCTCAGGAGTTCAAGACCAACCCGGGCAACATGGTGAAACCCAGTCTCTACAAAAAAAATACAAAAAATTAGCCAGGCATGGTGGCACGTGCCTGTG
GTCCCAGCCACTTGGGGGGCTAAAGCAGGAGGATCCCTTAAACACTGGAAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCA
GAACAACAACAACAACAAAATTGAAAAACAAAAAAACAAACAAAAAAGGCAAGGAGAGAACTTTCTAGGGTGATGGAAATGTTCTGTATCTTGACTGAGG
TATTGGTACATAGGTATATACATTTGTCAAAACACATTAAACACTTAAATGTACATTTTTGGTAAGTGATTATACCTCAGTTTAAAAATAATGAAAACAG
AAATGCCTAAATGTAAATGACTCCCACTAGCATGGGTATATTCCTTTGGAATGTTAAGTCCTACACTTAATTAGTGTGCTAATGCACTGGTGGCAAAATA
AACCTGTTTTCTCTTGTCTGTGCCTCTTTAGACCCATGTAGTGTATTTTTAGACTCACTCATGCAGTCATTCTTGTAGTACCTATAAGGACAATGTCAGA
AATATATATATTTCTGTCAGTGTGTGTGTGTGTATATATACACATATATGTGTGTGTATATATACACATATATACATATGTATACATATACATATACATA
TATACACACACACATATATGAAGGCAAGGAGAGAACTTTCTAGGGTGATGGAAATGTTCTGTATCTTGACTGAGGTCAAGATATATATATATACACACAC
ACACACATACACATATATAAGAGCCATAATCTCAGGGAGAAGGAAAGTTGTAGACAATGAACCAACATTGAAGTACTGGGCCCATCAAGGAACAGGATTG
TGGGTAAATACATCAGGCTTTTAGTCGGAATCCTGAAAAGGCTATGCCCTAGAAGTAGAGTTGAACCAGAAATTCACAACCCCCACAAGAACTCAAAACA
AGCTTTGAATCAATTAAATCCCTGAATGAATTAAGGTGATCTTCCTAATATCTTAAGGGCCTACCAGAAGTAAATCCTCTCTAGAGAAAGATACCATTAT
CTAGCTAGAACAGAGGTTGGCAATAATCAATCTTTTAGTCTTGTGGCCAATTAGGTTTCTGTTGCAACTGCTCAACTCTGCTGTTGCAGCACAAAAGCAG
CCACAGACAATATATAATGTGACTATTCCAGTAACTCTACTTATGGCCACTTAGGTTTGAATTTTATGTTTCATGTGTTGCCAAATATTATTCTTCATTT
GATTATTTTTCAATCATTTAAACATACAGCAAACATTCTTAAAGCCAGACAAAAACAGGTAGCAGGTCAGATTTGGTCCATGGGGCATAATTTGTAGATC
CCTGAGCTACAGCCACAAATTTTCCTTACAATTTTTCACATACAATTTCACCTTACAATTTTCACATACAATTTCAGGTATTCTATCAAAAATTAATAGG
CACGGCAGTCAATAGGACCTTATGATTGAGAAATAATGGAAAAACAAGACAAGAGAAACAAATCCACAGAAGATCTACAGATTGGAGTTTTCAGACACAG
ACTTTAAAATAACTGTGATTAATATATTCAGTAACTTAGATAACAAAATTACAGTAACTGAAATTAAACACCCAATAGAAGGTAGATAGGTTTAATGGCC
AATTAGACACACCTGATGACAGGATTAGTGAAAATGGAAAAATCAGAGGTACATGTATTAACATGGATGACTCTTACAATGTTGAGGGAAAAAAGCAAAT
TACAGAAACATATACTGTATAGTTTTTGTTTGTTTGTTTGTTTTTTAAGACAAGCTTTTTCACTGTTACCCAGGCTGAAATGCAGTGGCAAGATCACAGC
TCATTGCAACCTATACCTCCTGGGCTGAAGCAATCCTCCCACCTCAGCCTCCAGAATAGCTGGGACTACAGGCACGCACCACCACACCTGGATAGTTTTT
TCACTTTCTGTAGAGACAGGGTCTCGCTATGTTGCCCAGGTTAGTCTCGAACTCCTAGCCTCAACTGATCCTACTGCTTCTGCCTCCCAAAGCACTGGAA
TTACAGGCATGAGACACCATGCCTGGCCAGTATAGTTTTTAAACATACAAAATATATTATTATTTAGGCATATGGACATATATAGTGTAAGTATAAATAA
ATTATAAAAATATCTACTTCTGAATGGTTTCTAATGGGGGAAGGGAGACGAACACAATAGGCTTTAACAGTATTGTTGACAATTTTATTTAATATGTTTG
GTAGGTAAGCACTTATTTTTACCTTTTGTATGCATGGGACAGGGACTGTTGTCCCCACTTGGCTACACTTGAACAAGACTATATACCTTTGGATTCCTGG
TACCCTTTTTTTTTTTTTTTTAAGAAAAAAACTTGATAATGTATTCTATTTACCCAAATAAACAAAGGGTTAATAAATTAGAATAATGTATCTTCTATAT
TAGATCGAACTTAGAAAGACAATTTTAGTTGTCATTCTGATACAAAGATTTAACAAATTTTATGTGTGTATATACATATAT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.