Detailed information on TCONS_00211966

lncRNA-RNA interactions

Number of interactions: 31

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000264914 arylsulfatase B protein coding TCONS_00211966 529 302 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding TCONS_00211966 604 312 UTR3 Trans
ENST00000382044 tumor protein p53 binding protein 1 protein coding TCONS_00211966 584 310 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding TCONS_00211966 614 294 UTR3 Trans
ENST00000441159 family with sequence similarity 115, member C protein coding TCONS_00211966 1129 698 UTR3 Trans
ENST00000553936 gephyrin nonsense mediated decay TCONS_00211966 500 310 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay TCONS_00211966 554 308 UTR3 Trans
ENST00000569540 transmembrane protein 170A protein coding TCONS_00211966 554 308 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00211966 570 401 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding TCONS_00211966 570 401 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding TCONS_00211966 1007 733 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding TCONS_00211966 1007 733 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding TCONS_00211966 1007 733 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding TCONS_00211966 1007 733 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding TCONS_00211966 649 289 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00211966 642 309 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding TCONS_00211966 610 306 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00211966 610 306 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00211966 610 306 UTR5 Trans
TCONS_00078200 GTP cyclohydrolase I feedback regulator novel protein coding TCONS_00211966 555 306 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding TCONS_00211966 604 312 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding TCONS_00211966 604 312 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding TCONS_00211966 604 312 UTR3 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding TCONS_00211966 606 283 UTR5 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding TCONS_00211966 650 298 UTR5 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitter transporter), member 6 novel protein coding TCONS_00211966 540 299 UTR3 Trans
TCONS_00173891 RNA, U6 small nuclear 461, pseudogene novel protein coding TCONS_00211966 524 288 UTR3 Trans
TCONS_00182243 homogentisate 1,2-dioxygenase novel protein coding TCONS_00211966 559 308 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding TCONS_00211966 1346 843 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding TCONS_00211966 1346 843 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding TCONS_00211966 625 289 UTR3 Trans

Sequence

>TCONS_00234854 (6545 nt)
CTAAGCACGTCTGTAGGTTCAGGCTAAGGTTTTCCGTCAGAAGGCCGCGCAAGTGCACTTGCGTGTCACCGTTACCGTAGCGACTGGGCTTCTGGACTGT
ATATCCTAGCTGCCTTGTCAACATCTTCGAGCATCGGCAGCTCCGGAGGCCGGGGTAACTGGCAGCAGGTAGGAAACTATGTGAAAGAATCTCCTGATGT
CATAATTTCCGGGTGTCACCGGAACATTTGATCATCATTCCTTTGGCAATTCCAGCCTTCTGTGGAAAGGCCAGTAGAAAGCATTGATTTATTCACCTCT
ACAGGAATCAGACTCAGCCTCTTTTGGTTTTCAGTGAAGTATGCCTTTTCAATTTGGAACCCAGCCAAGGAGGTTTCCAGTGGAAGGAGGAGATTCTTCA
ATTGAGCTGGAACCTGGGCTGAGCTCCAGTGCTGCCTGTAATGGGAAGGAGATGTCACCAACCAGGCAACTCCGGAGGTGCCCTGGAAGTCATTGCCTGA
CAATAACTGATGTTCCCGTCACTGTTTATGCAACAACGAGAAAGCCACCTGCACAAAGCAGCAAGGAAATGCATCCTAAATAGCACCATTAAGTCTTTTG
TCAAGGTCTGACTAGGTCAAGGGTAATGGACCAGTATCATCTGGTGATCTGGTAAACAAATAAAAGTGGTGGCACCTTTAGATGATGACAACAGTTGAGC
TCTTTACTTTTAGTAAGACCGACAGAAATGTAGTCAGTAAAGCACATGTAGTGATAGGCTATCAGTTATGTCTGATACATAAGACAGAATAATATTTCAC
AATTAGAAAGTACCTTAGAGATCATCTTGCTCACAGTAGATCATTAATATCAATAATTAAAGATGAAGCTTAATCCACCATGGTCATCAGTCAGGTGGGG
CTTATTCTAAATGCTTAATGTGTCTTAAGCTCATTTCCTTGTTCATATTTGGGTTGCTACTTGGCTAAATCCTTTCACCTTAGTACCCTAAGCCAGTTTC
CTGGCTTGATACTATTTGATAATGCTCTGCTCAGGAATGATTATATTGGGTGAGAAATGGAGCCCTGGGGTTGTGTGTTTTGGAACAGTATTCAAGATCA
AAGAAAGTTCTTAGTCCATGGTTAATCTGCAAGGCATTTAAGCCACTTCCATAGAGGAGCCCAGATTGTTGGTTAAATATATTGATAATGAAGTCAAAGC
TGTGGTTCCAACCCCGATTTTTCCAAGAAAAATGACGTCTGGTTATCACTTTGTACACGAAGTGCTAACCAGGTATCTTGATAAATTGTTTACAGTAGGT
ATTGAGAAACCTCATGTGGATTTTTTAATTTGGTTAGATGTGGGATCACTTTTGAGGATGAGGCCAGCTCTCTATGTTCTCTTTTTCTTCTTGCAGTAGT
CCCCAGAAACTCAGTCTGCTTTCCTTTTCTCTCGATGGCTGTCAGCACCCATCTAATGAAATTGTCTTCTCCAAAAGACTGACTTTAGGATCAGATACAA
TTTTCACCAGTGTTTTTTGTCTACCTTGCTGCTTCTGAAAATATACATATAAGCCTTTTAAAATGAAAAGTTTATTAACTTATAATTAAATAGACGTAGA
TGCATATGTGTTGCATTAGGTGAAAAGAAAAACTGCCAGGGAGTTATAAGAGGAAAAACTCTCAGAGCTCACACTGAGCTGGGAGAAGTTTGAATGCCAA
CCAGTTAAAGTGGAAAGATCTTGAACATGTGGGGCATTGAGTAGAGACTCAGAAAGGTTGTACTTTCATAAGAGATCCAAACTGGAGCTAGACTAAAGGC
TAATGTATACCAATTTTAAGAAAGCTTAAAAATAAGCCTTGAGAGACTCAAGATGATCTCTAAGTAACCTCATTTTATCTGCCAAATAAAAATAGAACAT
TCCTTAAAGGAAGAAAACAAAATCGAGGCAGGAAATTGCCTGAGGCTGGAGAAAAAATGACAGGAAGGAGAAAGGAGTGATGAAAAATTCCTCAGAGGGC
TGGGCTTGGTGGCTCATGCCTGTAATCCTGGCACTTTGGGAGGCCGAAGTGGATGGATTATCTGAGGTCAGGCATTCGAAGCCAGCCTGGCCAACATGGT
GAAACCCCGACTCTACTAAAAATACAAAAATTAGTCGGGTATGATGGGCAGGTGCCTGTAATTCCAGCTACTTGGGAGGCTGAGGCAGGAAAATAGCTTG
AACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATTGCATCACTGTGCTCCAGCCTAGGCAACAGAGTGAGACTTTGTCTCAAAAAAAAAGAAAAACAAAG
AAAAATTCCTCAGAGCTCATACAAGGCTGGGTAGAATATGTGTTTCAACAATAGTGGATCTTTTAATATAGTACATGGATCATTGAGTAGAGTCTTCAGC
AAAATATTGGCAAAGTAGGGTTAGGGTTAGGTTAGGGAGATGGGAATAGACTGAAGACTACTCTGGACTTGCCCTAACAGAGTTTAAGAGCAACATTTGA
AAGGATCAAACTGATTTCAAGTAACTTGAGTGCATCCAAGGGGAGAAAACCCATCAAAATAAAAATAAAAACTACAATAAAATCCAGCACCAAAAGTGTA
ACATTCACAATGATTAGCATCTAATAAAAAGTTACCAGGCATGAAAAAAAAAAGGAAAAGGCAATCCACAGTCAAGAGAATCTTTAGTCAATGGTAATAG
ACTGAGAATGACAGATGATGGCATTAGTAAATGATATGGTTTGGCTCTGCGTCCCAACGCAAATCTCATGTTGAATTGTAACCCCCAGTGTTGGGGGAGG
GACCTGATAGGAGGTGACTGGATTATGGTGAACACCTATATGGATATGAATATGGAGTATTCTCCATGGATATGGAGAACACCCCTTGGTGTTCTCATAA
TAGTGAATGAGTTCTCATGAGATCTGGTTGTTTAAAAGCGTGTAGCACTTCCTTCTTTTCCCTCTGTGTCTCCTGCTCCACCATGGTAAGATGTGCTTGC
TTCCCTTTGCCTTCTGCCATTGTAAGTTTCCTGAGGCCTCCTAGCCATGCTTCCTGTTAAGCCTGTGGAACTGCATCATTTAAACCTCCTTTCTTCCTAA
ATTACACAGTCTCAGGTAGTTCTTTATAGCAGTGTGAAAATGGACAAATACAGTAGATCAGCTACCATAAATATCGTTCAAGTAGTAGATAAAAACATAA
TGAAGAAATAAATGGAAGGTATAAAAATGACCCAAATAGAACTTTTAGAGATGAAAAATACAATATCTGAAGTAAGAATATACACTGAATAGGATTAAGA
GATTAGATACTGGAGAAGAAAATATTAATGAACTTGAATATATAGCTATATAAATTATCCAACATTAAGTACAAAGAAAAAAGCGTATAAGTTTTGTGTT
TCATTATCAAGCAGTCTAATATATATGTAAGTGGCTTCTCAGAAGAATGGAGGGGGATAGAAAAATATTTGAAGAAATAATGGTCAAATTTTCCCCCAAT
TTGATGAAAACTATAAACTCACAGATCCAAGTATCTTAACCAACCCTAAGGAGAAGCAACATGAAAACAAAACAATGACATGTCCTAATTAAATTGAAGA
GAAAAATCTTAAAACTTGATAGTAAATGACACATGCATTCAGAGAAAGAAACATAAGAATGAGAGCACACTTTTCATCAGAAGATATGAAGGCAAAAAGG
CAATGGAGCAGTATCTTTAAAGTATCTTTCAAAAATGAAGGTGAAGTAAAGACTTTTCAGCCAAACAAATGCTGAGAGAATTAATCACTAGCAGATCTAC
ACTATAAAAAATGTTCAAGGAAGTTTTTCAGGCAGAAAGAAAATGGTACTAGATGGAAATTTGGATCTTTAGAAAGAAAGAACACAAGAAATGGAAAATA
TGTGGATAAATATATAGGCTTTAAAATTTTTTAAGCACTAATAGATAACCGTTTAAGGCAAACTATGGCAATGATATTTTATGTAAAAGTATAATGTATA
ATACTAGCAAAAAAACAAAGGAGGAGGAAAATAGAAGTTTACTTTTGTAATTCTTAGACTATTTGTGAAATGACATAATGGTATTTGACAATAGACTGAT
GAAGTAAAACTTGAGTTATCTCTAAAACCTAACAAACAGAGTTAGAGCTAATACAGTAGCTCTAATTATTGTATGGTGGAGAGTAAATGTAATAAATATT
ACTCATTTAATTCTAAAGAAGACAGGAAAAGAGGAAAGAAGGAACAAAGATAATACATTTAAACCATATGATATTGATATTTGCATTAATTACAGAAGGT
CTAAATTTCAGTTAAAAGGCAGAGATTATCAGATTGGCTAGAAAAGAAGATGCAACTATGAGCTGTCTACATGAGCCCACCTTAAATACTAAGACTCAGA
TAAATTAAAAGTATAAAAGGATAGAAATAGATATGCCATGCAGACATTAATCTGAAGAAAGCTGGAGTAGCTATGTTAATAATAGACAAGAAGATTTCAG
AGCAAAGAATTTACAGAGGTAAAGAGAGACAATTCATAATGATAAAGGGGTCAAGACATCAAGAATACCTAACAATCTTAAATGTTTATGCCAGAGCTTC
AAAGTACATGAAGCAAAAACTGATGCAATTGAAAGAAGAACTAACTCCACATTTGTAGTTCAGGATTTCAGCTGGTAGAACAAGTAAACAGAATCAGTAG
GGATATAGAGGACATGACAATTGATATAGAACACTTTACCTAGGAACAGCAGAATACTGTATATTCTTTTCAAGTGCACATGGAAAATTTACCAAGTAGA
ACATATTGTAGGCCACAAAACAAGTTTCAATAAATTGAAAAGTATTCAAAGTATGGAAGGGTAGGCAAAGTATGTCCTACAGTAGAATTAAATTATAAGT
TAACAATAGAAAGATACCTAGAGAATCTCCAAATATTGGAATACTAAGTGATACACTTCTGAATAACCCATGAATAAAAGAAGAAATGACTGAATAAATT
AGAAAGTGCTTTGAACTGGATGAAAACAAAAACACAGCATATCAAAATGCATGGGTAGCGCTTAGAGAGAATTAAGGCAATAAATTATTTCATTAGAAAA
GAAGAAACATCTCAAGGCAATGATCTAAGCTTCTACCTTAAGAAAACAGAAAAAAATGAGCAAACTAAATCCAAAATAAGCAGAAAGAAAGAAGTAATAA
AGAGCAGAAACAATGATATAAGAGCAGATAAATAATAGAGAAAATCAATAGAAACAAAAGCTGGTTCTTAAAAAAGATCAATAAAATTGATAAACCTCTA
GGTAGAATTATCAGGAAATAAAAAGACACAAATTATCAAATCAGGAATGATAGTAGGGGCATCACTACAGATTTAAGAAACTACCATCAGAGTGAACAGG
CAACCTACAGAATGGGAGAGAATGTTTGCAATCTGCTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATCTACAAGAAAAAAA
CAGCCCCATCAAAAAGTGGGCGAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGTAGCCAAAAGACACATGAAAAAATGCTCATCATCACTG
GCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAG
GATGTGGAGAGATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCGGTGTGGTGATTCCTCAGGAATCTTGAGAT
ATAAATACCATTTGACCATTTCACCCAGCAATCCCATTACTGGATATATACCCAAAGGATTATAAAACATGCTGCTATAAAGACACATATACACGTATGT
TTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATATACCATGGA
ATACTATGCAGCCATAAAAAATGATGAGTTCATGTCTTTTGTAGAGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATTGCAAGGACAAAAA
ACCAAACACCGTATGTTCTCACTCATAGGTGGGAACTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACATTGGGGCCTGTTGTGGTGAG
GGGGGAGTGGGGAGGGATAGCATTAGGAGATATACTTAATGTTAAATGACGAGTTGATGGGCTCAGCACACCAACATGGCACATGTATACATATGTAACT
AACCTGCACATTGTACCCTAAAATTTAAAGTAAAAAAAAAAAAACATTAAAAGGATAAATAGAGTTTTCAGCAGTATGAATTCTTTAATTCTTTAGTCTT
CCAAGGCCTTTACCCTGAATAAATTGCCTTCCCACATTTCTTACATTTCCAGGTGTAAGCTTTCTGTAAGGGAATATTACAAATAGGTCCTAGGGCAACC
TGGTGACACCATGCTTTCATAACCTTCCATCTGGCTGACATCAGCT

Expression



Full and truncated open reading frames discovered in TCONS_00234854

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.