Detailed information on TCONS_00214124

lncRNA-RNA interactions

Number of interactions: 29

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding TCONS_00214124 524 252 UTR3 Trans
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) processed transcript TCONS_00214124 503 301 noncoding Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding TCONS_00214124 533 294 UTR3 Trans
ENST00000513143 podoplanin protein coding TCONS_00214124 531 303 UTR5 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00214124 612 281 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding TCONS_00214124 612 281 UTR5 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding TCONS_00214124 524 252 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding TCONS_00214124 618 298 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding TCONS_00214124 618 298 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding TCONS_00214124 618 298 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding TCONS_00214124 618 298 UTR3 Trans
TCONS_00051246 sterol O-acyltransferase 2 novel protein coding TCONS_00214124 609 289 UTR5 Trans
TCONS_00053503 anoctamin 4 novel protein coding TCONS_00214124 600 282 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding TCONS_00214124 600 282 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00214124 563 268 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00214124 605 292 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00214124 605 292 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00214124 605 292 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00214124 605 292 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00214124 517 302 UTR3 Trans
TCONS_00117136 CBP80/20-dependent translation initiation factor novel protein coding TCONS_00214124 524 302 UTR3 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding TCONS_00214124 623 298 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding TCONS_00214124 621 301 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00214124 607 302 UTR3 Trans
TCONS_00211226 antisense novel protein coding TCONS_00214124 608 281 UTR3 Trans
TCONS_00232466 tumor suppressor candidate 3 novel protein coding TCONS_00214124 524 284 UTR3 Trans
TCONS_00232467 tumor suppressor candidate 3 novel protein coding TCONS_00214124 524 284 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00214124 619 282 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00214124 610 288 UTR3 Trans

Sequence

>TCONS_00247058 (1618 nt)
ATGCACGTAGTGAGAGACCAGGAAATTCAGCAACAGAATCACTGACAGAACAGGTCTAGAAGGAGATCATCACAAACTAAACAGGACCCCAATGGCCATG
AACAGCAGAACCCGCTTAACTGCTGCCTGAAACGTATTCAAAGAGATGAAAGTACAGAAGAGTTCTAGCCTAAAGCCCAACAGCAACCGTGGAGAGTCCA
GGAACCAACTCATCAGCCCTGTCAGAGCTCATCAAAGATGAGATGTCTTCCAATTGTGAAATCAGCTCAGCACAGAAGAGATGAGCGTGTGTACTACTTT
CCAAAAGAGGAAGTGGATTCAGAAAACTACTTATTTTGATGGACCCTGTACTCCATGGATCAGCTGGCACCACCCAGATCGATAAACTGGCTCATCTGGT
CTTGTGGCCCCCAACCAGGAAGTGCTCAGTGCAAGAGGACAGCTTCAACTCCCTTTGATTTCCTCTCCAACCCAAACAATCAGCACTCCCAACTCACTGG
CCCCTACCCACCAAATTATACTTAAAAATTCCAATTCCCAAATTCTCAGGAAGACCGATTTGAGTAATAATAAAATTTCATACAGCCAGCTCTGCATGAA
TTGAAATCTTTCTCTAATGCAATTCTCCTGTCTTAATAAATCAGCTCTGTCTAGGCAGAGGGTAAGGAGAACCCATGGGGCAGTTACATTATTACATTGG
ATTCTCATAGCAATCAATGCTATGCAGATCTCTCAGATGAGTTAGGTGAGTTATAGGTTGGTTCAAGTCACTACCTGATATGGTTTGGCTGTGTCCCCAC
CCAAATCTCATCTTTTTTTTCTTCTTTTTGAGAGATAAAGTCTCACTCTGTTGCCCACGCTGGAGTGCAGTGGCACAATGTCTACTCCCTGCAACCTCTG
CCTACCAGGTTCAAACGATTCTCCTGCCTTAGCTTCCCAAGTAGCTGGGACTACAGGTGTGTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAG
ACATGGTTTCCTCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATTTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCC
ACTGTGCCTGGCCCCAAATCTCATCTTGAACTGTAGTTCACATAATTTCCACATGTCATAGGAGGGACCCTGTGGGAGGTAATTGAATCATGGGGACTGT
TACTCCATGCTCTTCTCATGATAGTGAGATCATGAGATCTGATGGTTTTATAAGGGGCTTTCTCCCCACTTTGATCTGCACTTCTCCTCGCTGCCACCAT
GTGAAGACAGATGTGTTTGCTTCCCCTTCTACCATGATTGTAAGTTTCCTGAGGTCTACCCAGCCCTGTGGAACTGTGAGTCAATTAAACTTTTTTCCTT
TATAAATTACCCAGTCTTGGGTATGTCTTTATTAGCAGCGTGAGAATGGACTAATACACCACCCAAGTCAGTTTATTCAACCAAGTATCTGTGAAACTAC
TATATCCATCAGCTAGGGCTGCTGTAACAAGTTACCACAAACTGTGTGGCTTAAGACAACAGAAATGTATTCTCTAACAGTTCTGGAGGTTAGAAGGCCA
GAATCAAGGTGTCATTGGG

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.