Detailed information on TCONS_00216049

lncRNA-RNA interactions

Number of interactions: 29

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00216049 571 297 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding TCONS_00216049 506 244 UTR3 Trans
ENST00000338758 parvin, beta protein coding TCONS_00216049 622 306 UTR3 Trans
ENST00000479069 bone morphogenetic protein receptor, type II (serine/threonine kinase) processed transcript TCONS_00216049 556 297 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00216049 563 296 CDS Trans
ENST00000507518 hydroxysteroid (17-beta) dehydrogenase 11 processed transcript TCONS_00216049 500 222 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00216049 525 257 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00216049 517 309 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00216049 532 254 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding TCONS_00216049 610 297 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00216049 557 301 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding TCONS_00216049 608 285 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding TCONS_00216049 630 300 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding TCONS_00216049 630 300 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00216049 525 257 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00216049 614 251 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00216049 614 251 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00216049 598 300 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding TCONS_00216049 556 282 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00216049 630 301 UTR3 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding TCONS_00216049 614 253 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding TCONS_00216049 604 293 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00216049 571 297 UTR3 Trans
TCONS_00173891 RNA, U6 small nuclear 461, pseudogene novel protein coding TCONS_00216049 558 287 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00216049 572 296 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00216049 547 308 UTR3 Trans
TCONS_00225244 family with sequence similarity 115, member C novel protein coding TCONS_00216049 624 294 UTR3 Trans
TCONS_00225246 family with sequence similarity 115, member C novel protein coding TCONS_00216049 624 294 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00216049 621 305 UTR3 Trans

Sequence

>TCONS_00239255 (2639 nt)
GAACTCTATGGTCTGAGGACGCCGCTGTAACCCCGGAAGCAATCCTGAGAGGTCGGGACCGGCAAGATGGCGGCGCGGACAGCGTTCGGTGCTGTGTGCC
GGCGCCTCTGGCAGGGATTGGGGAATTTTTCTGTAAACACTTCTAAGGGCAATACAGCCAAAAATGGTGGCTTGCTTCTGTAACAATCTCTGATGAACCA
GACATATTATATAAGCGCCTCTCGGTTTTGGTGAAAGGTCACGATAAGGCTGTATTGGACAGTTATGAATATTTTGCTGTGCTTGCTGCTAAAGAACTTG
GTATCTCTATTAAAGTACATGAACCTCCAAGGAAAATAGAGCGATTTACTCTTCTCCAATCAGTGCATATTTACAAGAAGCACAGAGTTCAGTATGAAAT
GAGAACACTTTACAGATGTTTAGAGTTAGAACATCTAACTGGAAGCACAGCAGATGTCTACTTGGAATATATTCAGCGAAACTTACCTGAAGGGGTTGCC
ATGGAAGTAACAAAGACACAATTAGAACAGTTACCAGAACACATCAAGGAGCCAATCTGGGAAACACTATCAGAAGAAAAAGAAGAAAGCAAGTCATAAA
GCCTCAGGGAGGCCATTTTTGCCTAAATTTGAAATGAGGGTGGGCCAGATGAGTATGTTTAAGTGGAGAGTGCTTCCAGCTGAGATGATTTGAGTCTGCC
CTAACTGCTCCATTGAGTTCTCGTGCCCTCATCAGCTGAGGGCAGGGAATGGAACTTTAATGGAAGAACCACTTTTATCTATTCTTTTTATTCATTGTTT
CAGTTCTGATTTCAGCAAACATGAGCAAACCACTTTGACTGAAAGCAGAAAGAGTGAAAATTCTATTTTGTTACGCTACTGGTGTTCAATTATTAGTTTG
TACCATTTTTAATTTATGTCAGTTGATGCATCTGAAAATAAGTGCTTGGAGTGTTCGTACCCTTATTTTTTTTTAAGATTCCTAGAAGGAATCTTTGGTT
AATTCAGATTGAGCAGTTAAAGTTTTTGCTATTTACCTTTGTGCAGGCTGGCATATGCTAATTTGGGGGTGGTAACCAACCGATTTTATCTCATGTAAGC
ATTACATTTTGAAGACTGAATATACTTCACAGCAGATCAAACACATTTATGGCATGCACTGACCTCTTCTTGGAGCCCAGAACTTTATAGAGTTGCCTAC
CAGGGTTACTGTAATGGAATTTATGATCTTAAGAAATTACTAGTTGTATTATTTATCCTATGATTCATTCATTCAATAAGCTTTTACTGCATAAACTTTA
CATCCAGCACTGTAGTTAAGTACCCAAAATTGAATAGAAATAATGGCTTTTGAAAATCGCACAAAGCAGGCCAGGCACGGTGGCTCACGCCTGTAATCCC
AGCATTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAAGAGATCCAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTAATAAAAATACAAAAAT
TAGCTGGACATGGTGGCACGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCGTGAACCCGGGCCCGGTGGAGGCTGCAGTGAGACG
AGATCGCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACGCCGTCTCAAAAAAAAAAAAAGAAAATTGTGCAAAGCATAGGTAAATATTTTTCTTTAT
TAAGCTTCTCACTGAGAAGCCCTCTTTATTTTGGTAAATGTCACTCTGTTTGTTAGGAGATGTCTGCTTTTCCATGAAATGAAATAGTGGCTAAAGCCCT
GAAAGAGGCAAGACTACAATGGGCTGAAACAGTTGGTATAGCAACCCCAGAGAAGTGCTTCATTTTCTTTTTATAGTAGAAGCAGGTCCATGTCTTTTGT
GGTTTCCTGCACATCTTTGGAGTAGTTATGACTTCTCAGTTTTTCCCCCCTTAAACTGCATTGCCTATTCTTTTTTCCTGACATGCTATCAGGTATCAGT
GTGTTGAATACATACTGCTTGTGTATCAGACTTACGTTACTGTCATCACCATTAAAAGAATTGCAGCTTTGTGCCCCATGACCTTCAGCTCAGTTGTTGA
CTGTCATTCATGAATGCCTAAAGCATACTGACACCAGGTATAAGTACTTGAAGATCAAGAACTAGTCAATAAAACATGAGCAACATAATGGTAACTATGT
GCAGCAAAGCAGCAATTTATGACACATTTTCATCTGAAGTAATTCTTTAAAAATAAATATAGACCCGGCCGGTTGTGGAGGCTCAAGCCTGTAATCCCAG
CACTTTGAGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTAAAACCCCATCTCTATTAAAAACACAAAAAT
TAGCTGGTCATGGTGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAACCCAAGAGGTGGATGTTGCAGTGAGCCGAG
ATTGTACCATAGCACTCCATGTAAACCAAAGTCCTTAGTTTAGGACTTCCAATTATGTGTTAAAACCTCGGCTTAAATAAGCAAATGAACTACATGTGCA
CACATGCACGTGAGAAAAACTAGCAGTATTTCTTTTTTCT

Expression



Full and truncated open reading frames discovered in TCONS_00239255

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.