Detailed information on TCONS_00217837

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000560870 sense_intronic sense intronic TCONS_00217837 509 275 noncoding Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00217837 512 281 UTR3 Trans

Sequence

>TCONS_00195633 (2138 nt)
GAGCAGAGTCTGCAGGGGCAAATACAACTTACTCAGACAAAAAAGGCTGTCAGCAGCAAGTCTAGGCAGAAGCCAGGAGGAGTTAGGAACAGACTATAAG
AAATGGTTGGTCTGGAGGAAAAAGGGTAAAACTTATGAGGGCCCTTGTGAATTGATGAATATGAAGACACTAAGAAAGCAGAAATAGAACTGAGAAGAAT
GAAATAACTGTCTCTACCTTTCTCGAATTGTCTAATATGGAAAGAATGAAAGACAGCTAATAAGCAACTCTCTGCAAGAAGACATATGGCTTAGAATCTA
CTTGGAGAGAGTCAAACACAGAATCCCTTTGAATTTAATGGCCATTCCAGGTGATTTGAACAGCCAAATAAGAAACAGGTCCTCTTCAATGTACAATCTG
CCAAGTATGAAGTCTGAATGACCATCATTATTATGTATTTAATGTGCATAGAAAATCTATCTGCAACCTTCCAGAGTGTACCAGAAGTTTGGAATGTACA
TTATTATTGGCTCCATCTCAAACCACTCATAAATCAAAGAAAATAGCAGTTCCAGAGGAATCATCATAGAGGCTTCTAGGCCCCCATGCTGTGTGAACCT
GGTGAGAAAGGGAAGTCTGCTCTCACTGGACACTGGAACTGTTTGTCTCTGTCTCTGCTGTACTTTCCCTGCCTCTACCTCACTTAGTAAAGAAATCATC
TTTGCTTGATAACTAAAACAACCAATAAGGCTGAGAAAGGGGAAAACCCACATCTGGATTTAAATACAAGGTATTGGGCCAGCTGCTGGGGATTAAACTT
TGAACAAAACAGATAGAATCTATGTCCTCATGGGAGTGGCTAATGGGAGAGTCGGAACAAAAAAATAGCCAAGGATAATCCAGCAAATGATTTGGTGAAT
GCTATCAAAGAGAGAAATACACATGCTCTGGGAACACCAAACAGAGTCTTGCTCTTGTTGCCCAGGCTGGAGTATGATGGTGCGATCTCAGTTCACTGCA
ACCCCTGCCTCCCAGGTTCAAGTGATTCTCCTACCTCAGCCTCCTGAGTAGCAGGGATTATAGGTACAAGCCACCACACCCGGCTAATTTTTATATTTTT
AGTAGAGACGGGGTTTCACCACATTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTAATCTGCCCCTCGGCCTCCCAAAATGCTGGGATTAACAGGCA
TGAGCCACAGCACCTGGCTGACTTTGCCTGTTTTATAATTTCACACAATAAAATCATGCACTGTGCATTTCTTTGTATTGTCTCCTTTCACTCAGCATAA
TGTCTGTGTGATTCAACCCTGTGGTGATGTGTCATTTTTTTAAAAAAAATTAAGATATTTTATTATATGAACATACCATAATTTGTTTATTCATTTGGTG
AACATTGTGTTGATGCCAGGTTTGGGCCATTATGAATAAAGCTGCTTTGAATGTTTATGTACAAGTCTTTTGTGTACACATGTGTTTTTATTTCTCTTGA
GTAAACACCTGGGAGTGGGATTGCTGGGTTTTATGCTTAGGTATGTTTTTGACTTTGTCAGAAACTGCTAAACTGCTTTTCAAAGTAGTTGTACCATTTT
ACACTCTCACAGGCAACGCATGAAAATTCCCTTGGCAACGTTTGATATTGCCAATCTTTAATTTTAGTTATTCTAGTGGGTATAGAGTAATATCACATTG
GTTTTAATTTATATTCCCAAAATGACTAATGTTTAACATCTTGGATATTCACATGTCTTTGTGAAGAGTCTACTAAAATCTTTTGCCCTTTTAAATAAAT
TGTATTAATTGCCTTCCTATTGAGTTGGAGATATGCTTTATGTATTCTGGATATACTCCTGTATCCATTAAGGTGTTGCAAATATTTTCTTCCAGTCCGC
TTTTTCATTTAAAAAAATTTTTTTTTGAAGACAGCAGAAGGATTTACTGTTGAAAAAGTCCAATTTAAGCACTTTAAAATTTTTAATTAAAAAATTATTT
TTAGTGATTTTTCCTTTTTTATCTAAAAAATCTTTGCCTACCACAGGGTCATCATACATGTTTGAATCTATTTCAGAACTTTCTATTCTATTCCACCATC
TTGATTGCTATAGCTTCACAGTTAAGTTTTAAAATCGAG

Expression



Full and truncated open reading frames discovered in TCONS_00195633

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.